Experiment: apoplastic; Lima bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0439 and Psyr_0440 are separated by 309 nucleotides Psyr_0440 and Psyr_0441 are separated by 692 nucleotides
Psyr_0439: Psyr_0439 - conserved hypothetical protein, at 476,310 to 477,029
_0439
Psyr_0440: Psyr_0440 - Cobyrinic acid a,c-diamide synthase, at 477,339 to 478,118
_0440
Psyr_0441: Psyr_0441 - conserved hypothetical protein, at 478,811 to 479,206
_0441
Position (kb) 477
478
479 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 476.527 kb on + strand, within Psyr_0439 at 476.527 kb on + strand, within Psyr_0439 at 476.566 kb on - strand, within Psyr_0439 at 476.566 kb on - strand, within Psyr_0439 at 476.566 kb on - strand, within Psyr_0439 at 476.614 kb on + strand, within Psyr_0439 at 476.614 kb on + strand, within Psyr_0439 at 476.614 kb on + strand, within Psyr_0439 at 476.614 kb on + strand, within Psyr_0439 at 476.614 kb on + strand, within Psyr_0439 at 476.615 kb on - strand, within Psyr_0439 at 476.615 kb on - strand, within Psyr_0439 at 477.066 kb on + strand at 477.067 kb on - strand at 477.141 kb on + strand at 477.141 kb on + strand at 477.141 kb on + strand at 477.142 kb on - strand at 477.145 kb on - strand at 477.160 kb on + strand at 477.160 kb on + strand at 477.161 kb on - strand at 477.181 kb on + strand at 477.181 kb on + strand at 477.181 kb on + strand at 477.181 kb on + strand at 477.182 kb on - strand at 477.182 kb on - strand at 477.256 kb on + strand at 477.257 kb on - strand at 477.267 kb on + strand at 477.268 kb on - strand at 477.268 kb on - strand at 477.437 kb on - strand, within Psyr_0440 at 477.474 kb on + strand, within Psyr_0440 at 477.576 kb on - strand, within Psyr_0440 at 477.579 kb on + strand, within Psyr_0440 at 477.579 kb on + strand, within Psyr_0440 at 477.579 kb on + strand, within Psyr_0440 at 477.579 kb on + strand, within Psyr_0440 at 477.580 kb on - strand, within Psyr_0440 at 477.580 kb on - strand, within Psyr_0440 at 477.580 kb on - strand, within Psyr_0440 at 477.580 kb on - strand, within Psyr_0440 at 477.580 kb on - strand, within Psyr_0440 at 477.716 kb on + strand, within Psyr_0440 at 477.717 kb on - strand, within Psyr_0440 at 477.829 kb on - strand, within Psyr_0440 at 477.984 kb on + strand, within Psyr_0440 at 477.984 kb on + strand, within Psyr_0440 at 478.144 kb on + strand at 478.145 kb on - strand at 478.303 kb on - strand at 478.303 kb on - strand at 478.303 kb on - strand at 478.332 kb on - strand at 478.332 kb on - strand at 478.332 kb on - strand at 478.363 kb on + strand at 478.363 kb on + strand at 478.492 kb on + strand at 478.492 kb on + strand at 478.492 kb on + strand at 478.493 kb on - strand at 478.493 kb on - strand at 478.493 kb on - strand at 478.493 kb on - strand at 478.493 kb on - strand at 478.493 kb on - strand at 478.493 kb on - strand at 478.493 kb on - strand at 478.494 kb on + strand at 478.494 kb on + strand at 478.494 kb on + strand at 478.494 kb on + strand at 478.495 kb on - strand at 478.495 kb on - strand at 478.495 kb on - strand at 478.743 kb on + strand at 478.743 kb on + strand at 478.743 kb on + strand at 478.743 kb on + strand at 478.743 kb on + strand at 478.812 kb on + strand at 478.829 kb on + strand at 478.829 kb on + strand at 478.829 kb on + strand at 478.829 kb on + strand at 478.830 kb on - strand at 478.830 kb on - strand at 478.830 kb on - strand at 478.830 kb on - strand at 478.830 kb on - strand at 478.830 kb on - strand at 478.830 kb on - strand at 478.830 kb on - strand at 478.830 kb on - strand at 478.830 kb on - strand at 478.969 kb on + strand, within Psyr_0441 at 478.970 kb on - strand, within Psyr_0441 at 479.041 kb on - strand, within Psyr_0441 at 479.041 kb on - strand, within Psyr_0441 at 479.041 kb on - strand, within Psyr_0441
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Lima bean remove 476,527 + Psyr_0439 0.30 -0.7 476,527 + Psyr_0439 0.30 -0.6 476,566 - Psyr_0439 0.36 -0.4 476,566 - Psyr_0439 0.36 -2.1 476,566 - Psyr_0439 0.36 -0.1 476,614 + Psyr_0439 0.42 +1.3 476,614 + Psyr_0439 0.42 +0.3 476,614 + Psyr_0439 0.42 +1.8 476,614 + Psyr_0439 0.42 +0.8 476,614 + Psyr_0439 0.42 -0.3 476,615 - Psyr_0439 0.42 -1.1 476,615 - Psyr_0439 0.42 -0.3 477,066 + +0.3 477,067 - +0.8 477,141 + -3.3 477,141 + -0.9 477,141 + -1.0 477,142 - +1.0 477,145 - +0.6 477,160 + +1.0 477,160 + -1.6 477,161 - -0.4 477,181 + +0.2 477,181 + -0.4 477,181 + +0.6 477,181 + -1.7 477,182 - -1.6 477,182 - +1.7 477,256 + -1.0 477,257 - -1.2 477,267 + +1.2 477,268 - -1.2 477,268 - +1.2 477,437 - Psyr_0440 0.13 +1.0 477,474 + Psyr_0440 0.17 -1.5 477,576 - Psyr_0440 0.30 -0.5 477,579 + Psyr_0440 0.31 +0.5 477,579 + Psyr_0440 0.31 -1.2 477,579 + Psyr_0440 0.31 +1.2 477,579 + Psyr_0440 0.31 +0.2 477,580 - Psyr_0440 0.31 +0.4 477,580 - Psyr_0440 0.31 -2.0 477,580 - Psyr_0440 0.31 -0.9 477,580 - Psyr_0440 0.31 +1.3 477,580 - Psyr_0440 0.31 +0.9 477,716 + Psyr_0440 0.48 +0.7 477,717 - Psyr_0440 0.48 +1.2 477,829 - Psyr_0440 0.63 +0.4 477,984 + Psyr_0440 0.83 +2.6 477,984 + Psyr_0440 0.83 -0.4 478,144 + -2.7 478,145 - +0.2 478,303 - +1.2 478,303 - +1.2 478,303 - +1.1 478,332 - -1.4 478,332 - -0.2 478,332 - +0.7 478,363 + +0.1 478,363 + +1.5 478,492 + -0.4 478,492 + +0.4 478,492 + +0.3 478,493 - -1.1 478,493 - +2.0 478,493 - +0.7 478,493 - +1.7 478,493 - +2.7 478,493 - -0.5 478,493 - -0.4 478,493 - +1.7 478,494 + +0.2 478,494 + +0.6 478,494 + -0.5 478,494 + -0.8 478,495 - -1.0 478,495 - -0.9 478,495 - +0.8 478,743 + +0.2 478,743 + -0.7 478,743 + +1.4 478,743 + -2.2 478,743 + -0.7 478,812 + +0.1 478,829 + -0.1 478,829 + -1.4 478,829 + -2.9 478,829 + +1.2 478,830 - +0.0 478,830 - +0.1 478,830 - +0.6 478,830 - +0.6 478,830 - +0.3 478,830 - +0.3 478,830 - -0.0 478,830 - -1.4 478,830 - -0.6 478,830 - -1.3 478,969 + Psyr_0441 0.40 -3.2 478,970 - Psyr_0441 0.40 -0.3 479,041 - Psyr_0441 0.58 +3.0 479,041 - Psyr_0441 0.58 +0.7 479,041 - Psyr_0441 0.58 -0.4
Or see this region's nucleotide sequence