Experiment: apoplastic; Lima bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0069 and Psyr_0070 are separated by 199 nucleotides Psyr_0070 and Psyr_0071 overlap by 65 nucleotides Psyr_0071 and Psyr_0072 are separated by 186 nucleotides
Psyr_0069: Psyr_0069 - Na+/Pi-cotransporter:Na/Pi cotransporter II-related protein, at 70,375 to 72,027
_0069
Psyr_0070: Psyr_0070 - hypothetical protein, at 72,227 to 73,060
_0070
Psyr_0071: Psyr_0071 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer, at 72,996 to 74,972
_0071
Psyr_0072: Psyr_0072 - transcriptional regulator, LysR family, at 75,159 to 76,079
_0072
Position (kb) 72
73
74
75 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 72.055 kb on - strand at 72.103 kb on + strand at 72.103 kb on + strand at 72.104 kb on - strand at 72.104 kb on - strand at 72.111 kb on + strand at 72.111 kb on + strand at 72.112 kb on - strand at 72.114 kb on + strand at 72.114 kb on + strand at 72.114 kb on + strand at 72.114 kb on + strand at 72.115 kb on - strand at 72.115 kb on - strand at 72.115 kb on - strand at 72.115 kb on - strand at 72.115 kb on - strand at 72.123 kb on - strand at 72.162 kb on + strand at 72.162 kb on + strand at 72.163 kb on - strand at 72.175 kb on + strand at 72.186 kb on + strand at 72.243 kb on + strand at 72.262 kb on - strand at 72.262 kb on - strand at 72.320 kb on - strand, within Psyr_0070 at 72.393 kb on + strand, within Psyr_0070 at 72.917 kb on + strand, within Psyr_0070 at 73.271 kb on + strand, within Psyr_0071 at 73.271 kb on + strand, within Psyr_0071 at 73.271 kb on + strand, within Psyr_0071 at 73.271 kb on + strand, within Psyr_0071 at 73.271 kb on + strand, within Psyr_0071 at 73.271 kb on + strand, within Psyr_0071 at 73.272 kb on - strand, within Psyr_0071 at 73.272 kb on - strand, within Psyr_0071 at 73.272 kb on - strand, within Psyr_0071 at 73.272 kb on - strand, within Psyr_0071 at 73.914 kb on + strand, within Psyr_0071 at 73.953 kb on + strand, within Psyr_0071 at 73.953 kb on + strand, within Psyr_0071 at 74.143 kb on + strand, within Psyr_0071 at 74.143 kb on + strand, within Psyr_0071 at 74.144 kb on - strand, within Psyr_0071 at 74.144 kb on - strand, within Psyr_0071 at 74.144 kb on - strand, within Psyr_0071 at 74.144 kb on - strand, within Psyr_0071 at 74.146 kb on + strand, within Psyr_0071 at 74.146 kb on + strand, within Psyr_0071 at 74.146 kb on + strand, within Psyr_0071 at 74.146 kb on + strand, within Psyr_0071 at 74.146 kb on + strand, within Psyr_0071 at 74.146 kb on + strand, within Psyr_0071 at 74.146 kb on + strand, within Psyr_0071 at 74.146 kb on + strand, within Psyr_0071 at 74.146 kb on + strand, within Psyr_0071 at 74.146 kb on + strand, within Psyr_0071 at 74.146 kb on + strand, within Psyr_0071 at 74.146 kb on + strand, within Psyr_0071 at 74.146 kb on + strand, within Psyr_0071 at 74.146 kb on + strand, within Psyr_0071 at 74.146 kb on + strand, within Psyr_0071 at 74.147 kb on - strand, within Psyr_0071 at 74.147 kb on - strand, within Psyr_0071 at 74.147 kb on - strand, within Psyr_0071 at 74.147 kb on - strand, within Psyr_0071 at 74.147 kb on - strand, within Psyr_0071 at 74.147 kb on - strand, within Psyr_0071 at 74.147 kb on - strand, within Psyr_0071 at 74.147 kb on - strand, within Psyr_0071 at 74.147 kb on - strand, within Psyr_0071 at 74.147 kb on - strand, within Psyr_0071 at 74.147 kb on - strand, within Psyr_0071 at 74.147 kb on - strand, within Psyr_0071 at 74.294 kb on + strand, within Psyr_0071 at 74.350 kb on + strand, within Psyr_0071 at 74.350 kb on + strand, within Psyr_0071 at 74.351 kb on - strand, within Psyr_0071 at 74.422 kb on + strand, within Psyr_0071 at 74.422 kb on + strand, within Psyr_0071 at 74.422 kb on + strand, within Psyr_0071 at 74.422 kb on + strand, within Psyr_0071 at 74.422 kb on + strand, within Psyr_0071 at 74.422 kb on + strand, within Psyr_0071 at 74.422 kb on + strand, within Psyr_0071 at 74.422 kb on + strand, within Psyr_0071 at 74.422 kb on + strand, within Psyr_0071 at 74.422 kb on + strand, within Psyr_0071 at 74.422 kb on + strand, within Psyr_0071 at 74.422 kb on + strand, within Psyr_0071 at 74.422 kb on + strand, within Psyr_0071 at 74.422 kb on + strand, within Psyr_0071 at 74.422 kb on + strand, within Psyr_0071 at 74.422 kb on + strand, within Psyr_0071 at 74.423 kb on - strand, within Psyr_0071 at 74.423 kb on - strand, within Psyr_0071 at 74.423 kb on - strand, within Psyr_0071 at 74.423 kb on - strand, within Psyr_0071 at 74.423 kb on - strand, within Psyr_0071 at 74.423 kb on - strand, within Psyr_0071 at 74.423 kb on - strand, within Psyr_0071 at 74.423 kb on - strand, within Psyr_0071 at 74.423 kb on - strand, within Psyr_0071 at 74.423 kb on - strand, within Psyr_0071 at 74.423 kb on - strand, within Psyr_0071 at 74.426 kb on - strand, within Psyr_0071 at 74.440 kb on - strand, within Psyr_0071 at 74.455 kb on + strand, within Psyr_0071 at 74.455 kb on + strand, within Psyr_0071 at 74.455 kb on + strand, within Psyr_0071 at 74.455 kb on + strand, within Psyr_0071 at 74.455 kb on + strand, within Psyr_0071 at 74.455 kb on + strand, within Psyr_0071 at 74.455 kb on + strand, within Psyr_0071 at 74.455 kb on + strand, within Psyr_0071 at 74.455 kb on + strand, within Psyr_0071 at 74.455 kb on + strand, within Psyr_0071 at 74.455 kb on + strand, within Psyr_0071 at 74.455 kb on + strand, within Psyr_0071 at 74.455 kb on + strand, within Psyr_0071 at 74.456 kb on - strand, within Psyr_0071 at 74.456 kb on - strand, within Psyr_0071 at 74.456 kb on - strand, within Psyr_0071 at 74.456 kb on - strand, within Psyr_0071 at 74.456 kb on - strand, within Psyr_0071 at 74.456 kb on - strand, within Psyr_0071 at 74.456 kb on - strand, within Psyr_0071 at 74.456 kb on - strand, within Psyr_0071 at 74.456 kb on - strand, within Psyr_0071 at 74.456 kb on - strand, within Psyr_0071 at 74.456 kb on - strand, within Psyr_0071 at 74.456 kb on - strand, within Psyr_0071 at 74.456 kb on - strand, within Psyr_0071 at 74.456 kb on - strand, within Psyr_0071 at 74.456 kb on - strand, within Psyr_0071 at 74.456 kb on - strand, within Psyr_0071 at 74.456 kb on - strand, within Psyr_0071 at 74.483 kb on - strand, within Psyr_0071 at 74.720 kb on + strand, within Psyr_0071 at 74.891 kb on + strand at 74.894 kb on + strand at 74.894 kb on + strand at 74.895 kb on - strand at 74.903 kb on + strand at 74.903 kb on + strand at 74.933 kb on + strand at 74.933 kb on + strand at 74.972 kb on + strand at 74.972 kb on + strand at 74.972 kb on + strand at 74.972 kb on + strand at 74.972 kb on + strand at 74.972 kb on + strand at 74.972 kb on + strand at 74.973 kb on - strand at 74.973 kb on - strand at 74.973 kb on - strand at 74.973 kb on - strand at 74.973 kb on - strand at 75.016 kb on + strand at 75.016 kb on + strand at 75.036 kb on + strand at 75.036 kb on + strand at 75.036 kb on + strand at 75.036 kb on + strand at 75.036 kb on + strand at 75.036 kb on + strand at 75.037 kb on - strand at 75.037 kb on - strand at 75.037 kb on - strand at 75.037 kb on - strand at 75.037 kb on - strand at 75.037 kb on - strand at 75.037 kb on - strand at 75.037 kb on - strand at 75.037 kb on - strand at 75.037 kb on - strand at 75.037 kb on - strand at 75.049 kb on + strand at 75.049 kb on + strand at 75.049 kb on + strand at 75.049 kb on + strand at 75.054 kb on + strand at 75.055 kb on - strand at 75.101 kb on + strand at 75.101 kb on + strand at 75.101 kb on + strand at 75.101 kb on + strand at 75.102 kb on - strand at 75.161 kb on - strand at 75.168 kb on + strand at 75.168 kb on + strand at 75.271 kb on + strand, within Psyr_0072 at 75.271 kb on + strand, within Psyr_0072 at 75.271 kb on + strand, within Psyr_0072 at 75.272 kb on - strand, within Psyr_0072 at 75.272 kb on - strand, within Psyr_0072 at 75.272 kb on - strand, within Psyr_0072 at 75.272 kb on - strand, within Psyr_0072 at 75.272 kb on - strand, within Psyr_0072 at 75.275 kb on - strand, within Psyr_0072 at 75.275 kb on - strand, within Psyr_0072 at 75.275 kb on - strand, within Psyr_0072 at 75.275 kb on - strand, within Psyr_0072 at 75.639 kb on + strand, within Psyr_0072 at 75.639 kb on + strand, within Psyr_0072 at 75.640 kb on - strand, within Psyr_0072 at 75.803 kb on + strand, within Psyr_0072 at 75.803 kb on + strand, within Psyr_0072 at 75.803 kb on + strand, within Psyr_0072 at 75.803 kb on + strand, within Psyr_0072 at 75.804 kb on - strand, within Psyr_0072 at 75.804 kb on - strand, within Psyr_0072 at 75.905 kb on + strand, within Psyr_0072 at 75.906 kb on - strand, within Psyr_0072 at 75.959 kb on + strand, within Psyr_0072
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Lima bean remove 72,055 - +0.4 72,103 + -1.3 72,103 + -0.3 72,104 - -0.2 72,104 - -1.9 72,111 + -0.4 72,111 + +1.0 72,112 - -0.3 72,114 + -1.8 72,114 + -1.1 72,114 + +0.2 72,114 + -1.0 72,115 - +0.6 72,115 - +0.5 72,115 - +1.8 72,115 - -2.4 72,115 - +0.0 72,123 - +0.7 72,162 + +0.1 72,162 + +0.7 72,163 - +2.0 72,175 + +0.4 72,186 + -2.5 72,243 + +1.1 72,262 - -0.6 72,262 - -0.8 72,320 - Psyr_0070 0.11 +0.3 72,393 + Psyr_0070 0.20 +0.0 72,917 + Psyr_0070 0.83 -0.3 73,271 + Psyr_0071 0.14 -1.1 73,271 + Psyr_0071 0.14 +0.4 73,271 + Psyr_0071 0.14 +0.2 73,271 + Psyr_0071 0.14 +0.5 73,271 + Psyr_0071 0.14 +1.1 73,271 + Psyr_0071 0.14 -2.2 73,272 - Psyr_0071 0.14 +0.1 73,272 - Psyr_0071 0.14 +0.6 73,272 - Psyr_0071 0.14 -1.0 73,272 - Psyr_0071 0.14 +0.1 73,914 + Psyr_0071 0.46 +2.1 73,953 + Psyr_0071 0.48 +0.8 73,953 + Psyr_0071 0.48 -1.7 74,143 + Psyr_0071 0.58 +2.2 74,143 + Psyr_0071 0.58 +0.3 74,144 - Psyr_0071 0.58 -1.2 74,144 - Psyr_0071 0.58 -3.0 74,144 - Psyr_0071 0.58 -1.6 74,144 - Psyr_0071 0.58 +0.8 74,146 + Psyr_0071 0.58 -0.3 74,146 + Psyr_0071 0.58 +1.5 74,146 + Psyr_0071 0.58 -1.4 74,146 + Psyr_0071 0.58 +0.3 74,146 + Psyr_0071 0.58 -0.7 74,146 + Psyr_0071 0.58 +0.8 74,146 + Psyr_0071 0.58 +1.1 74,146 + Psyr_0071 0.58 -0.4 74,146 + Psyr_0071 0.58 -0.3 74,146 + Psyr_0071 0.58 +0.2 74,146 + Psyr_0071 0.58 -0.0 74,146 + Psyr_0071 0.58 -3.4 74,146 + Psyr_0071 0.58 +2.0 74,146 + Psyr_0071 0.58 -1.1 74,146 + Psyr_0071 0.58 -0.7 74,147 - Psyr_0071 0.58 -0.6 74,147 - Psyr_0071 0.58 +0.7 74,147 - Psyr_0071 0.58 +1.6 74,147 - Psyr_0071 0.58 -0.1 74,147 - Psyr_0071 0.58 -1.8 74,147 - Psyr_0071 0.58 +0.0 74,147 - Psyr_0071 0.58 -0.2 74,147 - Psyr_0071 0.58 +0.3 74,147 - Psyr_0071 0.58 +3.2 74,147 - Psyr_0071 0.58 +1.1 74,147 - Psyr_0071 0.58 +1.6 74,147 - Psyr_0071 0.58 +1.8 74,294 + Psyr_0071 0.66 +0.4 74,350 + Psyr_0071 0.68 +1.6 74,350 + Psyr_0071 0.68 -0.4 74,351 - Psyr_0071 0.69 -0.2 74,422 + Psyr_0071 0.72 +0.3 74,422 + Psyr_0071 0.72 -0.3 74,422 + Psyr_0071 0.72 +0.5 74,422 + Psyr_0071 0.72 +0.5 74,422 + Psyr_0071 0.72 +0.6 74,422 + Psyr_0071 0.72 -0.1 74,422 + Psyr_0071 0.72 -0.1 74,422 + Psyr_0071 0.72 -0.3 74,422 + Psyr_0071 0.72 +2.0 74,422 + Psyr_0071 0.72 +0.7 74,422 + Psyr_0071 0.72 +1.2 74,422 + Psyr_0071 0.72 +2.4 74,422 + Psyr_0071 0.72 +0.3 74,422 + Psyr_0071 0.72 +1.5 74,422 + Psyr_0071 0.72 +0.7 74,422 + Psyr_0071 0.72 -0.8 74,423 - Psyr_0071 0.72 +0.6 74,423 - Psyr_0071 0.72 -0.2 74,423 - Psyr_0071 0.72 -0.8 74,423 - Psyr_0071 0.72 +1.4 74,423 - Psyr_0071 0.72 +0.4 74,423 - Psyr_0071 0.72 +0.4 74,423 - Psyr_0071 0.72 -1.5 74,423 - Psyr_0071 0.72 -0.1 74,423 - Psyr_0071 0.72 -1.2 74,423 - Psyr_0071 0.72 +0.5 74,423 - Psyr_0071 0.72 -2.2 74,426 - Psyr_0071 0.72 +1.7 74,440 - Psyr_0071 0.73 -1.0 74,455 + Psyr_0071 0.74 -2.4 74,455 + Psyr_0071 0.74 +0.7 74,455 + Psyr_0071 0.74 -1.4 74,455 + Psyr_0071 0.74 -1.0 74,455 + Psyr_0071 0.74 -1.9 74,455 + Psyr_0071 0.74 -2.8 74,455 + Psyr_0071 0.74 +1.2 74,455 + Psyr_0071 0.74 +0.0 74,455 + Psyr_0071 0.74 -0.3 74,455 + Psyr_0071 0.74 -1.6 74,455 + Psyr_0071 0.74 +0.6 74,455 + Psyr_0071 0.74 -0.8 74,455 + Psyr_0071 0.74 -0.8 74,456 - Psyr_0071 0.74 +0.8 74,456 - Psyr_0071 0.74 +1.2 74,456 - Psyr_0071 0.74 +1.0 74,456 - Psyr_0071 0.74 -2.5 74,456 - Psyr_0071 0.74 -2.3 74,456 - Psyr_0071 0.74 -1.4 74,456 - Psyr_0071 0.74 +0.8 74,456 - Psyr_0071 0.74 +0.2 74,456 - Psyr_0071 0.74 +0.3 74,456 - Psyr_0071 0.74 +1.2 74,456 - Psyr_0071 0.74 -1.8 74,456 - Psyr_0071 0.74 -2.3 74,456 - Psyr_0071 0.74 -3.6 74,456 - Psyr_0071 0.74 -0.4 74,456 - Psyr_0071 0.74 -0.4 74,456 - Psyr_0071 0.74 +0.4 74,456 - Psyr_0071 0.74 -0.7 74,483 - Psyr_0071 0.75 +1.2 74,720 + Psyr_0071 0.87 +1.3 74,891 + +1.3 74,894 + -1.0 74,894 + -0.7 74,895 - +2.7 74,903 + -1.6 74,903 + -2.3 74,933 + +1.2 74,933 + -0.5 74,972 + -0.5 74,972 + -0.3 74,972 + -0.4 74,972 + +1.4 74,972 + +0.3 74,972 + +0.1 74,972 + +0.1 74,973 - -0.1 74,973 - +0.7 74,973 - -0.4 74,973 - -0.2 74,973 - -1.2 75,016 + -0.2 75,016 + +0.4 75,036 + +0.5 75,036 + -2.5 75,036 + +0.7 75,036 + -2.9 75,036 + -1.5 75,036 + +1.9 75,037 - +0.4 75,037 - +1.3 75,037 - +0.1 75,037 - +1.8 75,037 - +3.0 75,037 - +0.1 75,037 - -0.6 75,037 - -0.3 75,037 - +0.6 75,037 - -0.6 75,037 - +0.4 75,049 + -0.2 75,049 + +0.5 75,049 + +2.1 75,049 + -2.1 75,054 + -0.4 75,055 - -0.4 75,101 + +1.6 75,101 + -3.0 75,101 + -1.0 75,101 + -1.1 75,102 - +1.0 75,161 - -1.6 75,168 + +0.8 75,168 + +0.1 75,271 + Psyr_0072 0.12 -1.7 75,271 + Psyr_0072 0.12 -2.2 75,271 + Psyr_0072 0.12 +0.3 75,272 - Psyr_0072 0.12 -0.2 75,272 - Psyr_0072 0.12 -0.2 75,272 - Psyr_0072 0.12 -0.2 75,272 - Psyr_0072 0.12 +1.6 75,272 - Psyr_0072 0.12 +2.5 75,275 - Psyr_0072 0.13 +0.8 75,275 - Psyr_0072 0.13 -2.3 75,275 - Psyr_0072 0.13 -0.3 75,275 - Psyr_0072 0.13 +1.1 75,639 + Psyr_0072 0.52 -0.1 75,639 + Psyr_0072 0.52 -2.0 75,640 - Psyr_0072 0.52 -1.4 75,803 + Psyr_0072 0.70 +0.4 75,803 + Psyr_0072 0.70 -1.4 75,803 + Psyr_0072 0.70 -0.0 75,803 + Psyr_0072 0.70 -0.5 75,804 - Psyr_0072 0.70 +1.1 75,804 - Psyr_0072 0.70 -0.8 75,905 + Psyr_0072 0.81 +1.0 75,906 - Psyr_0072 0.81 -1.1 75,959 + Psyr_0072 0.87 -1.7
Or see this region's nucleotide sequence