Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0028

Experiment: apoplastic; Lima bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Lima bean
30,905	+		Psyr_0026	0.80	+0.3
30,905	+		Psyr_0026	0.80	+0.1
30,905	+		Psyr_0026	0.80	+2.1
30,905	+		Psyr_0026	0.80	-0.1
30,905	+		Psyr_0026	0.80	-0.9
30,905	+		Psyr_0026	0.80	+0.2
30,905	+		Psyr_0026	0.80	+0.1
30,905	+		Psyr_0026	0.80	+1.4
30,905	+		Psyr_0026	0.80	-0.2
30,906	-		Psyr_0026	0.80	-1.6
30,906	-		Psyr_0026	0.80	+0.9
30,906	-		Psyr_0026	0.80	+0.0
30,906	-		Psyr_0026	0.80	+1.2
30,906	-		Psyr_0026	0.80	-0.5
30,906	-		Psyr_0026	0.80	-1.0
30,906	-		Psyr_0026	0.80	-0.5
30,906	-		Psyr_0026	0.80	+1.1
30,906	-		Psyr_0026	0.80	+0.7
30,906	-		Psyr_0026	0.80	-2.3
30,906	-		Psyr_0026	0.80	-1.1
30,906	-		Psyr_0026	0.80	+2.6
30,906	-		Psyr_0026	0.80	-1.8
30,947	+		Psyr_0026	0.83	-0.8
30,947	+		Psyr_0026	0.83	+1.6
30,947	+		Psyr_0026	0.83	+0.3
30,947	+		Psyr_0026	0.83	+0.9
30,948	-		Psyr_0026	0.83	-1.1
30,948	-		Psyr_0026	0.83	+0.1
30,961	+		Psyr_0026	0.84	+2.3
30,962	-		Psyr_0026	0.84	-0.2
30,962	-		Psyr_0026	0.84	-2.2
30,963	+		Psyr_0026	0.84	-0.8
30,963	+		Psyr_0026	0.84	+0.2
30,963	+		Psyr_0026	0.84	-0.0
30,963	+		Psyr_0026	0.84	+1.2
30,963	+		Psyr_0026	0.84	-0.0
30,963	+		Psyr_0026	0.84	+1.9
30,964	-		Psyr_0026	0.84	-0.5
31,041	-		Psyr_0026	0.89	-0.1
31,041	-		Psyr_0026	0.89	+1.0
31,041	-		Psyr_0026	0.89	+0.6
31,041	-		Psyr_0026	0.89	+0.4
31,041	-		Psyr_0026	0.89	+0.4
31,049	+		Psyr_0026	0.90	+0.7
31,079	+				-1.1
31,079	+				-0.7
31,080	-				+0.8
31,080	-				-0.7
31,285	+				+0.9
31,285	+				+0.5
31,285	+				-0.4
31,286	-				+0.9
31,286	-				-0.4
31,286	-				-1.4
31,286	-				+1.6
31,322	+		Psyr_0027	0.12	+1.7
31,322	+		Psyr_0027	0.12	-0.6
31,323	-		Psyr_0027	0.12	+0.7
31,323	-		Psyr_0027	0.12	-0.4
31,323	-		Psyr_0027	0.12	+2.0
31,358	+		Psyr_0027	0.23	+0.9
31,359	-		Psyr_0027	0.24	+0.7
31,359	-		Psyr_0027	0.24	-2.1
31,359	-		Psyr_0027	0.24	+1.3
31,359	-		Psyr_0027	0.24	-1.6
31,359	-		Psyr_0027	0.24	-0.1
31,363	+		Psyr_0027	0.25	+0.5
31,363	+		Psyr_0027	0.25	-0.7
31,363	+		Psyr_0027	0.25	-1.6
31,363	+		Psyr_0027	0.25	+0.8
31,363	+		Psyr_0027	0.25	+0.3
31,363	+		Psyr_0027	0.25	+0.2
31,363	+		Psyr_0027	0.25	-1.0
31,363	+		Psyr_0027	0.25	-0.5
31,363	+		Psyr_0027	0.25	+0.1
31,363	+		Psyr_0027	0.25	-0.9
31,364	-		Psyr_0027	0.25	+1.9
31,364	-		Psyr_0027	0.25	+1.0
31,364	-		Psyr_0027	0.25	-0.4
31,364	-		Psyr_0027	0.25	+1.3
31,364	-		Psyr_0027	0.25	+0.1
31,364	-		Psyr_0027	0.25	+1.0
31,364	-		Psyr_0027	0.25	+2.2
31,364	-		Psyr_0027	0.25	+0.4
31,364	-		Psyr_0027	0.25	+1.2
31,411	+		Psyr_0027	0.40	+1.3
31,411	+		Psyr_0027	0.40	+1.2
31,411	+		Psyr_0027	0.40	-1.3
31,412	-		Psyr_0027	0.40	-2.1
31,412	-		Psyr_0027	0.40	+0.2
31,412	-		Psyr_0027	0.40	+0.9
31,412	-		Psyr_0027	0.40	+0.4
31,454	+		Psyr_0027	0.53	-1.6
31,455	-		Psyr_0027	0.54	-0.1
31,455	-		Psyr_0027	0.54	-0.5
31,584	+				+0.0
31,584	+				+0.6
31,584	+				+0.1
31,585	-				-0.4
31,585	-				+0.2
31,585	-				-0.1
31,586	+				+0.6
31,586	+				+0.2
31,586	+				+1.7
31,586	+				+0.2
31,586	+				+3.2
31,586	+				-0.3
31,586	+				+0.3
31,586	+				-0.1
31,586	+				-2.4
31,586	+				-1.9
31,586	+				+1.3
31,586	+				+1.2
31,586	+				+1.0
31,586	+				+0.7
31,586	+				-0.9
31,586	+				-1.9
31,587	-				+0.9
31,587	-				+1.2
31,587	-				+0.8
31,587	-				+1.3
31,587	-				-0.6
31,587	-				+0.0
31,587	-				+1.1
31,587	-				-1.4
31,587	-				+0.9
31,587	-				-0.7
31,587	-				-0.9
31,587	-				+1.2
31,587	-				+0.2
31,587	-				-1.6
31,587	-				-0.7
31,587	-				-1.0
31,587	-				+0.5
31,587	-				-0.7
31,587	-				-1.4
31,587	-				-0.9
31,587	-				-0.8
31,587	-				+1.9
31,587	-				-0.4
31,617	+				+1.8
31,642	-				+1.2
31,676	+				+0.3
31,676	+				+0.0
31,676	+				-0.7
31,677	-				-0.7
31,705	+				-0.3
31,705	+				-0.1
31,705	+				-1.8
31,706	-				-1.8
31,706	-				+1.8
31,706	-				+0.5
31,706	-				-0.6
31,752	+				-0.7
31,752	+				+0.4
31,752	+				-2.8
31,752	+				+0.7
31,752	+				-0.0
31,753	-				-0.5
31,753	-				+1.2
31,753	-				+1.0
31,753	-				-1.4
31,753	-				+1.9
31,753	-				-2.0
31,753	-				+0.3
31,753	-				-1.2
31,753	-				-1.7
31,756	+				-0.8
31,757	-				-1.4
31,769	+				-0.0
31,770	-				-1.4
31,992	-		Psyr_0028	0.24	+1.3
31,992	-		Psyr_0028	0.24	+1.3
32,011	-		Psyr_0028	0.26	+0.4
32,011	-		Psyr_0028	0.26	-0.2
32,036	+		Psyr_0028	0.29	+1.2
32,037	-		Psyr_0028	0.29	+0.5
32,037	-		Psyr_0028	0.29	+0.0
32,037	-		Psyr_0028	0.29	+0.4
32,057	+		Psyr_0028	0.31	+1.0
32,057	+		Psyr_0028	0.31	-0.8
32,057	+		Psyr_0028	0.31	-0.0
32,058	-		Psyr_0028	0.31	+0.1
32,058	-		Psyr_0028	0.31	-2.1
32,058	-		Psyr_0028	0.31	-0.3
32,264	+		Psyr_0028	0.54	-1.0
32,264	+		Psyr_0028	0.54	-0.2
32,264	+		Psyr_0028	0.54	+1.7
32,265	-		Psyr_0028	0.54	-0.3
32,265	-		Psyr_0028	0.54	+1.2
32,265	-		Psyr_0028	0.54	+0.4
32,337	-		Psyr_0028	0.61	+1.4
32,337	-		Psyr_0028	0.61	-0.2
32,420	+		Psyr_0028	0.70	+2.0
32,420	+		Psyr_0028	0.70	-0.4
32,421	-		Psyr_0028	0.70	+1.1
32,421	-		Psyr_0028	0.70	-1.4
32,489	+		Psyr_0028	0.78	+2.1
32,490	-		Psyr_0028	0.78	+0.8
32,683	+				+0.4
32,700	+				-0.9
32,700	+				-1.1
32,700	+				-2.1
32,792	+				+0.8
32,792	+				+0.8
32,792	+				-2.0
32,792	+				+0.9
32,792	+				-0.0
32,792	+				-0.6
32,792	+				-0.6
32,792	+				-0.0
32,792	+				+0.4
32,792	+				-2.3
32,792	+				-2.0
32,792	+				+1.2
32,792	+				+0.3
32,793	-				-0.4
32,793	-				-1.4
32,793	-				+0.5
32,793	-				-0.2
32,793	-				-0.4
32,793	-				+0.2
32,793	-				+1.8
32,793	-				-1.5
32,793	-				+0.3
32,793	-				-1.7
32,793	-				+0.5
32,793	-				+1.9
32,794	-				-0.0
32,905	+		Psyr_0029	0.12	+0.2
33,047	+		Psyr_0029	0.21	+0.6
33,047	+		Psyr_0029	0.21	+0.2
33,047	+		Psyr_0029	0.21	-0.8
33,048	-		Psyr_0029	0.21	+0.2
33,048	-		Psyr_0029	0.21	+0.1
33,050	+		Psyr_0029	0.21	+2.6
33,110	+		Psyr_0029	0.25	+2.2
33,110	+		Psyr_0029	0.25	-2.0
33,110	+		Psyr_0029	0.25	+0.6
33,110	+		Psyr_0029	0.25	+1.5
33,110	+		Psyr_0029	0.25	+0.3
33,110	+		Psyr_0029	0.25	+1.0
33,110	+		Psyr_0029	0.25	+1.1
33,110	+		Psyr_0029	0.25	-1.6
33,110	+		Psyr_0029	0.25	+0.7
33,111	-		Psyr_0029	0.25	+1.8
33,111	-		Psyr_0029	0.25	-0.1
33,111	-		Psyr_0029	0.25	+0.7
33,111	-		Psyr_0029	0.25	-0.6
33,111	-		Psyr_0029	0.25	+1.0
33,111	-		Psyr_0029	0.25	+1.0
33,111	-		Psyr_0029	0.25	-0.9
33,111	-		Psyr_0029	0.25	-0.4
33,111	-		Psyr_0029	0.25	-1.6
33,111	-		Psyr_0029	0.25	+1.4
33,111	-		Psyr_0029	0.25	+1.5
33,287	+		Psyr_0029	0.37	+0.6
33,288	-		Psyr_0029	0.37	-0.4
33,288	-		Psyr_0029	0.37	+1.5
33,455	+		Psyr_0029	0.48	+0.3
33,455	+		Psyr_0029	0.48	+0.6
33,455	+		Psyr_0029	0.48	+1.4
33,455	+		Psyr_0029	0.48	+1.3
33,455	+		Psyr_0029	0.48	-0.9
33,455	+		Psyr_0029	0.48	+0.0
33,456	-		Psyr_0029	0.48	+2.3
33,456	-		Psyr_0029	0.48	+0.7
33,456	-		Psyr_0029	0.48	-0.8
33,456	-		Psyr_0029	0.48	-0.7
33,456	-		Psyr_0029	0.48	-4.0
33,456	-		Psyr_0029	0.48	+0.8
33,456	-		Psyr_0029	0.48	-0.7
33,456	-		Psyr_0029	0.48	-2.1
33,456	-		Psyr_0029	0.48	+1.4
33,473	+		Psyr_0029	0.49	-0.2
33,473	+		Psyr_0029	0.49	-2.0
33,474	-		Psyr_0029	0.49	-0.5
33,530	+		Psyr_0029	0.53	-3.1
33,530	+		Psyr_0029	0.53	-0.7
33,530	+		Psyr_0029	0.53	+1.0
33,530	+		Psyr_0029	0.53	-0.7
33,531	-		Psyr_0029	0.53	-0.2
33,531	-		Psyr_0029	0.53	-3.5
33,531	-		Psyr_0029	0.53	-0.4
33,531	-		Psyr_0029	0.53	-0.8
33,598	+		Psyr_0029	0.58	-0.2
33,598	+		Psyr_0029	0.58	+1.1
33,599	-		Psyr_0029	0.58	-3.1
33,599	-		Psyr_0029	0.58	-1.9
33,614	+		Psyr_0029	0.59	-1.1
33,644	+		Psyr_0029	0.61	+0.4
33,644	+		Psyr_0029	0.61	-1.6
33,645	-		Psyr_0029	0.61	-2.9