Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_3956 and Ga0059261_3957 are separated by 2 nucleotides Ga0059261_3957 and Ga0059261_3958 overlap by 1 nucleotides
Ga0059261_3956: Ga0059261_3956 - amino acid/amide ABC transporter substrate-binding protein, HAAT family (TC 3.A.1.4.-), at 4,071,268 to 4,072,233
_3956
Ga0059261_3957: Ga0059261_3957 - prepilin-type N-terminal cleavage/methylation domain, at 4,072,236 to 4,072,859
_3957
Ga0059261_3958: Ga0059261_3958 - Type II secretory pathway, component PulK, at 4,072,859 to 4,073,731
_3958
Position (kb)
4072
4073 Strain fitness (log2 ratio)
-2
-1
0
1 at 4071.352 kb on - strand at 4071.352 kb on - strand at 4071.352 kb on - strand at 4071.352 kb on - strand at 4071.403 kb on + strand, within Ga0059261_3956 at 4071.404 kb on - strand, within Ga0059261_3956 at 4071.404 kb on - strand, within Ga0059261_3956 at 4071.404 kb on - strand, within Ga0059261_3956 at 4071.404 kb on - strand, within Ga0059261_3956 at 4071.404 kb on - strand, within Ga0059261_3956 at 4071.404 kb on - strand, within Ga0059261_3956 at 4071.635 kb on - strand, within Ga0059261_3956 at 4071.988 kb on + strand, within Ga0059261_3956 at 4072.036 kb on + strand, within Ga0059261_3956 at 4072.036 kb on + strand, within Ga0059261_3956 at 4072.036 kb on + strand, within Ga0059261_3956 at 4072.036 kb on + strand, within Ga0059261_3956 at 4072.037 kb on - strand, within Ga0059261_3956 at 4072.037 kb on - strand, within Ga0059261_3956 at 4072.114 kb on + strand, within Ga0059261_3956 at 4072.114 kb on + strand, within Ga0059261_3956 at 4072.114 kb on + strand, within Ga0059261_3956 at 4072.114 kb on + strand, within Ga0059261_3956 at 4072.114 kb on + strand, within Ga0059261_3956 at 4072.115 kb on - strand, within Ga0059261_3956 at 4072.115 kb on - strand, within Ga0059261_3956 at 4072.201 kb on + strand at 4072.202 kb on - strand at 4072.202 kb on - strand at 4072.202 kb on - strand at 4072.558 kb on + strand, within Ga0059261_3957 at 4072.558 kb on + strand, within Ga0059261_3957 at 4072.559 kb on - strand, within Ga0059261_3957 at 4072.559 kb on - strand, within Ga0059261_3957 at 4072.565 kb on + strand, within Ga0059261_3957 at 4072.611 kb on + strand, within Ga0059261_3957 at 4072.611 kb on + strand, within Ga0059261_3957 at 4072.611 kb on + strand, within Ga0059261_3957 at 4072.611 kb on + strand, within Ga0059261_3957 at 4072.612 kb on - strand, within Ga0059261_3957 at 4072.795 kb on + strand, within Ga0059261_3957 at 4072.795 kb on + strand, within Ga0059261_3957 at 4072.795 kb on + strand, within Ga0059261_3957 at 4073.285 kb on + strand, within Ga0059261_3958 at 4073.285 kb on + strand, within Ga0059261_3958 at 4073.285 kb on + strand, within Ga0059261_3958 at 4073.285 kb on + strand, within Ga0059261_3958 at 4073.285 kb on + strand, within Ga0059261_3958 at 4073.286 kb on - strand, within Ga0059261_3958 at 4073.286 kb on - strand, within Ga0059261_3958 at 4073.286 kb on - strand, within Ga0059261_3958 at 4073.286 kb on - strand, within Ga0059261_3958 at 4073.286 kb on - strand, within Ga0059261_3958 at 4073.399 kb on - strand, within Ga0059261_3958 at 4073.512 kb on - strand, within Ga0059261_3958 at 4073.750 kb on + strand at 4073.750 kb on + strand at 4073.751 kb on - strand at 4073.751 kb on - strand at 4073.751 kb on - strand at 4073.751 kb on - strand at 4073.751 kb on - strand at 4073.824 kb on + strand at 4073.824 kb on + strand at 4073.824 kb on + strand at 4073.824 kb on + strand at 4073.824 kb on + strand at 4073.825 kb on - strand at 4073.825 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,071,352 - -0.2 4,071,352 - +0.4 4,071,352 - -0.4 4,071,352 - +0.5 4,071,403 + Ga0059261_3956 0.14 -0.5 4,071,404 - Ga0059261_3956 0.14 -0.2 4,071,404 - Ga0059261_3956 0.14 -0.2 4,071,404 - Ga0059261_3956 0.14 -0.4 4,071,404 - Ga0059261_3956 0.14 +0.5 4,071,404 - Ga0059261_3956 0.14 +0.1 4,071,404 - Ga0059261_3956 0.14 -0.2 4,071,635 - Ga0059261_3956 0.38 -0.1 4,071,988 + Ga0059261_3956 0.75 -0.3 4,072,036 + Ga0059261_3956 0.80 +0.6 4,072,036 + Ga0059261_3956 0.80 -0.1 4,072,036 + Ga0059261_3956 0.80 -0.2 4,072,036 + Ga0059261_3956 0.80 -0.5 4,072,037 - Ga0059261_3956 0.80 -0.8 4,072,037 - Ga0059261_3956 0.80 -1.1 4,072,114 + Ga0059261_3956 0.88 +0.4 4,072,114 + Ga0059261_3956 0.88 -0.4 4,072,114 + Ga0059261_3956 0.88 -0.2 4,072,114 + Ga0059261_3956 0.88 -0.3 4,072,114 + Ga0059261_3956 0.88 -0.6 4,072,115 - Ga0059261_3956 0.88 -0.1 4,072,115 - Ga0059261_3956 0.88 -0.6 4,072,201 + -0.7 4,072,202 - -1.1 4,072,202 - -2.2 4,072,202 - -0.3 4,072,558 + Ga0059261_3957 0.52 +0.7 4,072,558 + Ga0059261_3957 0.52 +0.6 4,072,559 - Ga0059261_3957 0.52 -0.1 4,072,559 - Ga0059261_3957 0.52 +1.2 4,072,565 + Ga0059261_3957 0.53 +0.7 4,072,611 + Ga0059261_3957 0.60 -1.2 4,072,611 + Ga0059261_3957 0.60 +0.2 4,072,611 + Ga0059261_3957 0.60 +0.3 4,072,611 + Ga0059261_3957 0.60 +0.2 4,072,612 - Ga0059261_3957 0.60 -0.3 4,072,795 + Ga0059261_3957 0.90 +0.3 4,072,795 + Ga0059261_3957 0.90 +0.2 4,072,795 + Ga0059261_3957 0.90 +0.3 4,073,285 + Ga0059261_3958 0.49 +0.1 4,073,285 + Ga0059261_3958 0.49 -0.4 4,073,285 + Ga0059261_3958 0.49 +0.4 4,073,285 + Ga0059261_3958 0.49 -0.1 4,073,285 + Ga0059261_3958 0.49 +0.4 4,073,286 - Ga0059261_3958 0.49 +0.1 4,073,286 - Ga0059261_3958 0.49 +0.5 4,073,286 - Ga0059261_3958 0.49 +0.3 4,073,286 - Ga0059261_3958 0.49 +0.9 4,073,286 - Ga0059261_3958 0.49 -0.6 4,073,399 - Ga0059261_3958 0.62 +0.3 4,073,512 - Ga0059261_3958 0.75 -0.2 4,073,750 + +0.0 4,073,750 + +1.4 4,073,751 - +0.8 4,073,751 - -0.1 4,073,751 - -0.2 4,073,751 - +0.9 4,073,751 - +0.2 4,073,824 + +0.5 4,073,824 + -2.4 4,073,824 + -0.3 4,073,824 + -0.3 4,073,824 + +0.2 4,073,825 - +1.3 4,073,825 - +0.9
Or see this region's nucleotide sequence