Experiment: methyl 3-keto-a-D-glucopyranoside (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS24265 and CA265_RS24270 are separated by 303 nucleotides CA265_RS24270 and CA265_RS24275 are separated by 178 nucleotides CA265_RS24275 and CA265_RS24280 are separated by 36 nucleotides CA265_RS24280 and CA265_RS24285 are separated by 232 nucleotides
CA265_RS24265: CA265_RS24265 - hypothetical protein, at 5,907,014 to 5,907,385
_RS24265
CA265_RS24270: CA265_RS24270 - hypothetical protein, at 5,907,689 to 5,907,898
_RS24270
CA265_RS24275: CA265_RS24275 - hypothetical protein, at 5,908,077 to 5,908,427
_RS24275
CA265_RS24280: CA265_RS24280 - cupin, at 5,908,464 to 5,908,865
_RS24280
CA265_RS24285: CA265_RS24285 - hypothetical protein, at 5,909,098 to 5,909,439
_RS24285
CA265_RS24290: CA265_RS24290 - hypothetical protein, at 5,909,339 to 5,909,941
_RS24290
Position (kb) 5908
5909 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5907.096 kb on - strand, within CA265_RS24265 at 5907.128 kb on + strand, within CA265_RS24265 at 5907.128 kb on + strand, within CA265_RS24265 at 5907.131 kb on - strand, within CA265_RS24265 at 5907.172 kb on + strand, within CA265_RS24265 at 5907.176 kb on - strand, within CA265_RS24265 at 5907.234 kb on - strand, within CA265_RS24265 at 5907.249 kb on + strand, within CA265_RS24265 at 5907.320 kb on - strand, within CA265_RS24265 at 5907.384 kb on - strand at 5907.591 kb on + strand at 5907.690 kb on + strand at 5907.732 kb on - strand, within CA265_RS24270 at 5907.756 kb on - strand, within CA265_RS24270 at 5907.759 kb on + strand, within CA265_RS24270 at 5907.763 kb on + strand, within CA265_RS24270 at 5907.763 kb on + strand, within CA265_RS24270 at 5907.763 kb on + strand, within CA265_RS24270 at 5907.763 kb on + strand, within CA265_RS24270 at 5907.764 kb on - strand, within CA265_RS24270 at 5907.921 kb on + strand at 5907.958 kb on - strand at 5907.973 kb on + strand at 5907.984 kb on + strand at 5908.074 kb on - strand at 5908.104 kb on - strand at 5908.121 kb on + strand, within CA265_RS24275 at 5908.141 kb on - strand, within CA265_RS24275 at 5908.150 kb on - strand, within CA265_RS24275 at 5908.161 kb on + strand, within CA265_RS24275 at 5908.162 kb on - strand, within CA265_RS24275 at 5908.164 kb on - strand, within CA265_RS24275 at 5908.202 kb on - strand, within CA265_RS24275 at 5908.216 kb on + strand, within CA265_RS24275 at 5908.248 kb on - strand, within CA265_RS24275 at 5908.303 kb on + strand, within CA265_RS24275 at 5908.303 kb on + strand, within CA265_RS24275 at 5908.304 kb on - strand, within CA265_RS24275 at 5908.310 kb on - strand, within CA265_RS24275 at 5908.348 kb on + strand, within CA265_RS24275 at 5908.359 kb on - strand, within CA265_RS24275 at 5908.359 kb on - strand, within CA265_RS24275 at 5908.442 kb on + strand at 5908.489 kb on + strand at 5908.536 kb on + strand, within CA265_RS24280 at 5908.585 kb on + strand, within CA265_RS24280 at 5908.645 kb on + strand, within CA265_RS24280 at 5908.646 kb on - strand, within CA265_RS24280 at 5908.649 kb on + strand, within CA265_RS24280 at 5908.722 kb on - strand, within CA265_RS24280 at 5908.738 kb on + strand, within CA265_RS24280 at 5908.814 kb on - strand, within CA265_RS24280 at 5908.856 kb on - strand at 5908.881 kb on + strand at 5908.896 kb on + strand at 5908.994 kb on - strand at 5909.004 kb on + strand at 5909.005 kb on - strand at 5909.006 kb on + strand at 5909.007 kb on - strand at 5909.389 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction methyl 3-keto-a-D-glucopyranoside (C) remove 5,907,096 - CA265_RS24265 0.22 -0.5 5,907,128 + CA265_RS24265 0.31 +1.5 5,907,128 + CA265_RS24265 0.31 -0.1 5,907,131 - CA265_RS24265 0.31 +0.6 5,907,172 + CA265_RS24265 0.42 +0.5 5,907,176 - CA265_RS24265 0.44 -2.0 5,907,234 - CA265_RS24265 0.59 -1.3 5,907,249 + CA265_RS24265 0.63 +0.5 5,907,320 - CA265_RS24265 0.82 +0.4 5,907,384 - +0.3 5,907,591 + -0.3 5,907,690 + +0.2 5,907,732 - CA265_RS24270 0.20 +0.6 5,907,756 - CA265_RS24270 0.32 -1.1 5,907,759 + CA265_RS24270 0.33 +2.9 5,907,763 + CA265_RS24270 0.35 -1.2 5,907,763 + CA265_RS24270 0.35 -0.6 5,907,763 + CA265_RS24270 0.35 -0.2 5,907,763 + CA265_RS24270 0.35 -0.4 5,907,764 - CA265_RS24270 0.36 -0.5 5,907,921 + -0.1 5,907,958 - -1.3 5,907,973 + +0.2 5,907,984 + +0.1 5,908,074 - -0.1 5,908,104 - +0.3 5,908,121 + CA265_RS24275 0.13 -1.1 5,908,141 - CA265_RS24275 0.18 -1.4 5,908,150 - CA265_RS24275 0.21 -2.2 5,908,161 + CA265_RS24275 0.24 +0.4 5,908,162 - CA265_RS24275 0.24 -0.7 5,908,164 - CA265_RS24275 0.25 -1.6 5,908,202 - CA265_RS24275 0.36 +2.1 5,908,216 + CA265_RS24275 0.40 +0.3 5,908,248 - CA265_RS24275 0.49 -0.4 5,908,303 + CA265_RS24275 0.64 -0.4 5,908,303 + CA265_RS24275 0.64 -0.1 5,908,304 - CA265_RS24275 0.65 +0.1 5,908,310 - CA265_RS24275 0.66 +0.4 5,908,348 + CA265_RS24275 0.77 -0.4 5,908,359 - CA265_RS24275 0.80 -0.5 5,908,359 - CA265_RS24275 0.80 -0.5 5,908,442 + +0.3 5,908,489 + -0.1 5,908,536 + CA265_RS24280 0.18 -0.1 5,908,585 + CA265_RS24280 0.30 -1.2 5,908,645 + CA265_RS24280 0.45 -0.7 5,908,646 - CA265_RS24280 0.45 -1.1 5,908,649 + CA265_RS24280 0.46 -1.1 5,908,722 - CA265_RS24280 0.64 -1.0 5,908,738 + CA265_RS24280 0.68 -0.6 5,908,814 - CA265_RS24280 0.87 +0.6 5,908,856 - -2.8 5,908,881 + -0.3 5,908,896 + -2.1 5,908,994 - +0.0 5,909,004 + -0.2 5,909,005 - +0.3 5,909,006 + -0.7 5,909,007 - +0.1 5,909,389 - +0.1
Or see this region's nucleotide sequence