Experiment: methyl 3-keto-a-D-glucopyranoside (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS22325 and CA265_RS22330 are separated by 4 nucleotides CA265_RS22330 and CA265_RS22335 are separated by 222 nucleotides CA265_RS22335 and CA265_RS22340 are separated by 64 nucleotides
CA265_RS22325: CA265_RS22325 - secretion protein HlyD, at 5,481,078 to 5,482,238
_RS22325
CA265_RS22330: CA265_RS22330 - peptidase C39, at 5,482,243 to 5,484,354
_RS22330
CA265_RS22335: CA265_RS22335 - hypothetical protein, at 5,484,577 to 5,484,780
_RS22335
CA265_RS22340: CA265_RS22340 - hypothetical protein, at 5,484,845 to 5,485,843
_RS22340
Position (kb) 5482
5483
5484
5485 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5481.281 kb on + strand, within CA265_RS22325 at 5481.307 kb on + strand, within CA265_RS22325 at 5481.329 kb on + strand, within CA265_RS22325 at 5481.329 kb on + strand, within CA265_RS22325 at 5481.330 kb on - strand, within CA265_RS22325 at 5481.516 kb on + strand, within CA265_RS22325 at 5481.516 kb on + strand, within CA265_RS22325 at 5481.517 kb on - strand, within CA265_RS22325 at 5481.517 kb on - strand, within CA265_RS22325 at 5481.560 kb on + strand, within CA265_RS22325 at 5481.599 kb on + strand, within CA265_RS22325 at 5481.637 kb on - strand, within CA265_RS22325 at 5481.668 kb on - strand, within CA265_RS22325 at 5481.684 kb on + strand, within CA265_RS22325 at 5481.686 kb on + strand, within CA265_RS22325 at 5481.686 kb on + strand, within CA265_RS22325 at 5481.780 kb on + strand, within CA265_RS22325 at 5481.780 kb on + strand, within CA265_RS22325 at 5481.781 kb on - strand, within CA265_RS22325 at 5481.811 kb on + strand, within CA265_RS22325 at 5481.820 kb on + strand, within CA265_RS22325 at 5481.844 kb on - strand, within CA265_RS22325 at 5481.900 kb on + strand, within CA265_RS22325 at 5481.936 kb on - strand, within CA265_RS22325 at 5481.972 kb on + strand, within CA265_RS22325 at 5481.974 kb on + strand, within CA265_RS22325 at 5481.979 kb on - strand, within CA265_RS22325 at 5482.005 kb on - strand, within CA265_RS22325 at 5482.029 kb on - strand, within CA265_RS22325 at 5482.040 kb on - strand, within CA265_RS22325 at 5482.099 kb on + strand, within CA265_RS22325 at 5482.100 kb on - strand, within CA265_RS22325 at 5482.159 kb on + strand at 5482.183 kb on + strand at 5482.248 kb on + strand at 5482.269 kb on + strand at 5482.374 kb on + strand at 5482.375 kb on - strand at 5482.385 kb on + strand at 5482.394 kb on + strand at 5482.394 kb on + strand at 5482.413 kb on - strand at 5482.433 kb on + strand at 5482.455 kb on - strand, within CA265_RS22330 at 5482.485 kb on + strand, within CA265_RS22330 at 5482.485 kb on + strand, within CA265_RS22330 at 5482.485 kb on + strand, within CA265_RS22330 at 5482.485 kb on + strand, within CA265_RS22330 at 5482.486 kb on - strand, within CA265_RS22330 at 5482.493 kb on + strand, within CA265_RS22330 at 5482.513 kb on + strand, within CA265_RS22330 at 5482.513 kb on + strand, within CA265_RS22330 at 5482.514 kb on - strand, within CA265_RS22330 at 5482.533 kb on - strand, within CA265_RS22330 at 5482.546 kb on - strand, within CA265_RS22330 at 5482.564 kb on - strand, within CA265_RS22330 at 5482.564 kb on - strand, within CA265_RS22330 at 5482.566 kb on - strand, within CA265_RS22330 at 5482.626 kb on - strand, within CA265_RS22330 at 5482.687 kb on - strand, within CA265_RS22330 at 5482.737 kb on - strand, within CA265_RS22330 at 5482.746 kb on + strand, within CA265_RS22330 at 5482.747 kb on - strand, within CA265_RS22330 at 5482.747 kb on - strand, within CA265_RS22330 at 5482.747 kb on - strand, within CA265_RS22330 at 5482.754 kb on - strand, within CA265_RS22330 at 5482.770 kb on - strand, within CA265_RS22330 at 5482.815 kb on - strand, within CA265_RS22330 at 5482.827 kb on + strand, within CA265_RS22330 at 5482.827 kb on + strand, within CA265_RS22330 at 5482.848 kb on + strand, within CA265_RS22330 at 5482.848 kb on + strand, within CA265_RS22330 at 5482.957 kb on + strand, within CA265_RS22330 at 5482.976 kb on + strand, within CA265_RS22330 at 5483.016 kb on + strand, within CA265_RS22330 at 5483.066 kb on + strand, within CA265_RS22330 at 5483.067 kb on - strand, within CA265_RS22330 at 5483.067 kb on - strand, within CA265_RS22330 at 5483.124 kb on + strand, within CA265_RS22330 at 5483.129 kb on - strand, within CA265_RS22330 at 5483.132 kb on - strand, within CA265_RS22330 at 5483.132 kb on - strand, within CA265_RS22330 at 5483.173 kb on + strand, within CA265_RS22330 at 5483.183 kb on + strand, within CA265_RS22330 at 5483.186 kb on - strand, within CA265_RS22330 at 5483.186 kb on - strand, within CA265_RS22330 at 5483.186 kb on - strand, within CA265_RS22330 at 5483.214 kb on + strand, within CA265_RS22330 at 5483.215 kb on - strand, within CA265_RS22330 at 5483.287 kb on - strand, within CA265_RS22330 at 5483.376 kb on + strand, within CA265_RS22330 at 5483.397 kb on + strand, within CA265_RS22330 at 5483.428 kb on - strand, within CA265_RS22330 at 5483.435 kb on + strand, within CA265_RS22330 at 5483.435 kb on + strand, within CA265_RS22330 at 5483.436 kb on - strand, within CA265_RS22330 at 5483.493 kb on - strand, within CA265_RS22330 at 5483.503 kb on + strand, within CA265_RS22330 at 5483.506 kb on - strand, within CA265_RS22330 at 5483.732 kb on + strand, within CA265_RS22330 at 5483.755 kb on - strand, within CA265_RS22330 at 5483.796 kb on - strand, within CA265_RS22330 at 5483.796 kb on - strand, within CA265_RS22330 at 5483.815 kb on - strand, within CA265_RS22330 at 5483.818 kb on + strand, within CA265_RS22330 at 5483.825 kb on + strand, within CA265_RS22330 at 5483.855 kb on - strand, within CA265_RS22330 at 5483.867 kb on - strand, within CA265_RS22330 at 5483.903 kb on + strand, within CA265_RS22330 at 5483.925 kb on - strand, within CA265_RS22330 at 5483.939 kb on + strand, within CA265_RS22330 at 5483.940 kb on - strand, within CA265_RS22330 at 5484.004 kb on - strand, within CA265_RS22330 at 5484.056 kb on - strand, within CA265_RS22330 at 5484.080 kb on + strand, within CA265_RS22330 at 5484.081 kb on - strand, within CA265_RS22330 at 5484.081 kb on - strand, within CA265_RS22330 at 5484.081 kb on - strand, within CA265_RS22330 at 5484.270 kb on + strand at 5484.285 kb on + strand at 5484.291 kb on - strand at 5484.291 kb on - strand at 5484.291 kb on - strand at 5484.311 kb on + strand at 5484.312 kb on - strand at 5484.394 kb on + strand at 5484.471 kb on + strand at 5484.487 kb on + strand at 5484.582 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction methyl 3-keto-a-D-glucopyranoside (C) remove 5,481,281 + CA265_RS22325 0.17 +0.5 5,481,307 + CA265_RS22325 0.20 +0.1 5,481,329 + CA265_RS22325 0.22 -1.0 5,481,329 + CA265_RS22325 0.22 +0.9 5,481,330 - CA265_RS22325 0.22 +1.0 5,481,516 + CA265_RS22325 0.38 +0.3 5,481,516 + CA265_RS22325 0.38 -0.4 5,481,517 - CA265_RS22325 0.38 +0.7 5,481,517 - CA265_RS22325 0.38 +0.2 5,481,560 + CA265_RS22325 0.42 -0.3 5,481,599 + CA265_RS22325 0.45 +0.0 5,481,637 - CA265_RS22325 0.48 +0.1 5,481,668 - CA265_RS22325 0.51 -0.0 5,481,684 + CA265_RS22325 0.52 -0.5 5,481,686 + CA265_RS22325 0.52 -0.7 5,481,686 + CA265_RS22325 0.52 +0.5 5,481,780 + CA265_RS22325 0.60 -2.2 5,481,780 + CA265_RS22325 0.60 -0.1 5,481,781 - CA265_RS22325 0.61 -0.1 5,481,811 + CA265_RS22325 0.63 -1.1 5,481,820 + CA265_RS22325 0.64 +2.2 5,481,844 - CA265_RS22325 0.66 -0.4 5,481,900 + CA265_RS22325 0.71 -0.1 5,481,936 - CA265_RS22325 0.74 -0.2 5,481,972 + CA265_RS22325 0.77 +0.3 5,481,974 + CA265_RS22325 0.77 +1.7 5,481,979 - CA265_RS22325 0.78 +1.4 5,482,005 - CA265_RS22325 0.80 +0.5 5,482,029 - CA265_RS22325 0.82 +2.6 5,482,040 - CA265_RS22325 0.83 -1.2 5,482,099 + CA265_RS22325 0.88 +0.3 5,482,100 - CA265_RS22325 0.88 +0.4 5,482,159 + +0.5 5,482,183 + -1.1 5,482,248 + -2.0 5,482,269 + -0.3 5,482,374 + +0.6 5,482,375 - +0.2 5,482,385 + +0.7 5,482,394 + -1.1 5,482,394 + -0.9 5,482,413 - +0.3 5,482,433 + -0.2 5,482,455 - CA265_RS22330 0.10 +0.8 5,482,485 + CA265_RS22330 0.11 -0.9 5,482,485 + CA265_RS22330 0.11 -1.4 5,482,485 + CA265_RS22330 0.11 +0.4 5,482,485 + CA265_RS22330 0.11 +0.2 5,482,486 - CA265_RS22330 0.12 +0.7 5,482,493 + CA265_RS22330 0.12 +0.7 5,482,513 + CA265_RS22330 0.13 -1.2 5,482,513 + CA265_RS22330 0.13 -0.1 5,482,514 - CA265_RS22330 0.13 -0.5 5,482,533 - CA265_RS22330 0.14 +1.1 5,482,546 - CA265_RS22330 0.14 +0.7 5,482,564 - CA265_RS22330 0.15 +0.9 5,482,564 - CA265_RS22330 0.15 +0.1 5,482,566 - CA265_RS22330 0.15 -0.3 5,482,626 - CA265_RS22330 0.18 +0.3 5,482,687 - CA265_RS22330 0.21 +0.2 5,482,737 - CA265_RS22330 0.23 -0.7 5,482,746 + CA265_RS22330 0.24 +0.6 5,482,747 - CA265_RS22330 0.24 +0.8 5,482,747 - CA265_RS22330 0.24 +1.0 5,482,747 - CA265_RS22330 0.24 +0.6 5,482,754 - CA265_RS22330 0.24 -0.1 5,482,770 - CA265_RS22330 0.25 +2.6 5,482,815 - CA265_RS22330 0.27 +0.1 5,482,827 + CA265_RS22330 0.28 +0.3 5,482,827 + CA265_RS22330 0.28 -0.5 5,482,848 + CA265_RS22330 0.29 +0.4 5,482,848 + CA265_RS22330 0.29 -1.0 5,482,957 + CA265_RS22330 0.34 -1.3 5,482,976 + CA265_RS22330 0.35 -1.0 5,483,016 + CA265_RS22330 0.37 -1.1 5,483,066 + CA265_RS22330 0.39 +0.1 5,483,067 - CA265_RS22330 0.39 -1.5 5,483,067 - CA265_RS22330 0.39 +0.4 5,483,124 + CA265_RS22330 0.42 -0.0 5,483,129 - CA265_RS22330 0.42 +0.2 5,483,132 - CA265_RS22330 0.42 -0.2 5,483,132 - CA265_RS22330 0.42 -0.6 5,483,173 + CA265_RS22330 0.44 -0.9 5,483,183 + CA265_RS22330 0.45 +0.1 5,483,186 - CA265_RS22330 0.45 +0.4 5,483,186 - CA265_RS22330 0.45 -0.3 5,483,186 - CA265_RS22330 0.45 -0.4 5,483,214 + CA265_RS22330 0.46 -1.0 5,483,215 - CA265_RS22330 0.46 +0.3 5,483,287 - CA265_RS22330 0.49 +0.9 5,483,376 + CA265_RS22330 0.54 -1.1 5,483,397 + CA265_RS22330 0.55 +0.6 5,483,428 - CA265_RS22330 0.56 -0.2 5,483,435 + CA265_RS22330 0.56 +1.0 5,483,435 + CA265_RS22330 0.56 +0.6 5,483,436 - CA265_RS22330 0.56 -0.0 5,483,493 - CA265_RS22330 0.59 +0.6 5,483,503 + CA265_RS22330 0.60 +1.0 5,483,506 - CA265_RS22330 0.60 +0.3 5,483,732 + CA265_RS22330 0.71 +0.2 5,483,755 - CA265_RS22330 0.72 -0.9 5,483,796 - CA265_RS22330 0.74 +0.1 5,483,796 - CA265_RS22330 0.74 +1.6 5,483,815 - CA265_RS22330 0.74 +0.7 5,483,818 + CA265_RS22330 0.75 +0.2 5,483,825 + CA265_RS22330 0.75 -2.8 5,483,855 - CA265_RS22330 0.76 -1.5 5,483,867 - CA265_RS22330 0.77 +1.2 5,483,903 + CA265_RS22330 0.79 +0.1 5,483,925 - CA265_RS22330 0.80 -0.0 5,483,939 + CA265_RS22330 0.80 -0.8 5,483,940 - CA265_RS22330 0.80 +0.3 5,484,004 - CA265_RS22330 0.83 +0.5 5,484,056 - CA265_RS22330 0.86 +0.1 5,484,080 + CA265_RS22330 0.87 -0.6 5,484,081 - CA265_RS22330 0.87 +0.6 5,484,081 - CA265_RS22330 0.87 +0.6 5,484,081 - CA265_RS22330 0.87 +0.4 5,484,270 + -0.8 5,484,285 + -0.5 5,484,291 - +0.2 5,484,291 - -0.2 5,484,291 - +0.0 5,484,311 + -2.8 5,484,312 - +1.0 5,484,394 + -1.5 5,484,471 + -0.0 5,484,487 + -0.5 5,484,582 + -0.6
Or see this region's nucleotide sequence