Experiment: methyl 3-keto-a-D-glucopyranoside (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS04075 and CA265_RS04080 are separated by 319 nucleotides CA265_RS04080 and CA265_RS04085 are separated by 137 nucleotides
CA265_RS04075: CA265_RS04075 - decarboxylase, at 978,155 to 979,696
_RS04075
CA265_RS04080: CA265_RS04080 - hypothetical protein, at 980,016 to 982,451
_RS04080
CA265_RS04085: CA265_RS04085 - phosphohydrolase, at 982,589 to 983,809
_RS04085
Position (kb) 980
981
982
983 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 979.158 kb on + strand, within CA265_RS04075 at 979.175 kb on + strand, within CA265_RS04075 at 979.187 kb on + strand, within CA265_RS04075 at 979.283 kb on + strand, within CA265_RS04075 at 979.317 kb on - strand, within CA265_RS04075 at 979.395 kb on + strand, within CA265_RS04075 at 979.396 kb on - strand, within CA265_RS04075 at 979.396 kb on - strand, within CA265_RS04075 at 979.526 kb on + strand, within CA265_RS04075 at 979.526 kb on + strand, within CA265_RS04075 at 979.527 kb on - strand, within CA265_RS04075 at 979.580 kb on - strand at 979.602 kb on + strand at 979.690 kb on + strand at 979.722 kb on - strand at 979.754 kb on + strand at 980.026 kb on + strand at 980.026 kb on + strand at 980.221 kb on + strand at 980.226 kb on + strand at 980.230 kb on + strand at 980.231 kb on - strand at 980.237 kb on + strand at 980.237 kb on + strand at 980.238 kb on - strand at 980.238 kb on - strand at 980.245 kb on + strand at 980.307 kb on - strand, within CA265_RS04080 at 980.315 kb on + strand, within CA265_RS04080 at 980.315 kb on + strand, within CA265_RS04080 at 980.315 kb on + strand, within CA265_RS04080 at 980.368 kb on + strand, within CA265_RS04080 at 980.369 kb on - strand, within CA265_RS04080 at 980.389 kb on + strand, within CA265_RS04080 at 980.559 kb on - strand, within CA265_RS04080 at 980.559 kb on - strand, within CA265_RS04080 at 980.621 kb on - strand, within CA265_RS04080 at 980.621 kb on - strand, within CA265_RS04080 at 980.621 kb on - strand, within CA265_RS04080 at 980.644 kb on - strand, within CA265_RS04080 at 980.678 kb on + strand, within CA265_RS04080 at 980.679 kb on - strand, within CA265_RS04080 at 980.731 kb on + strand, within CA265_RS04080 at 980.768 kb on - strand, within CA265_RS04080 at 980.768 kb on - strand, within CA265_RS04080 at 980.768 kb on - strand, within CA265_RS04080 at 980.774 kb on - strand, within CA265_RS04080 at 980.816 kb on + strand, within CA265_RS04080 at 980.886 kb on - strand, within CA265_RS04080 at 980.899 kb on + strand, within CA265_RS04080 at 980.904 kb on + strand, within CA265_RS04080 at 980.986 kb on - strand, within CA265_RS04080 at 981.132 kb on + strand, within CA265_RS04080 at 981.133 kb on - strand, within CA265_RS04080 at 981.169 kb on - strand, within CA265_RS04080 at 981.172 kb on + strand, within CA265_RS04080 at 981.232 kb on + strand, within CA265_RS04080 at 981.326 kb on + strand, within CA265_RS04080 at 981.326 kb on + strand, within CA265_RS04080 at 981.327 kb on - strand, within CA265_RS04080 at 981.420 kb on - strand, within CA265_RS04080 at 981.422 kb on + strand, within CA265_RS04080 at 981.422 kb on + strand, within CA265_RS04080 at 981.422 kb on + strand, within CA265_RS04080 at 981.422 kb on + strand, within CA265_RS04080 at 981.422 kb on + strand, within CA265_RS04080 at 981.423 kb on - strand, within CA265_RS04080 at 981.617 kb on + strand, within CA265_RS04080 at 981.645 kb on + strand, within CA265_RS04080 at 981.646 kb on - strand, within CA265_RS04080 at 981.751 kb on - strand, within CA265_RS04080 at 981.771 kb on - strand, within CA265_RS04080 at 981.852 kb on + strand, within CA265_RS04080 at 981.883 kb on + strand, within CA265_RS04080 at 981.883 kb on + strand, within CA265_RS04080 at 981.888 kb on - strand, within CA265_RS04080 at 981.898 kb on + strand, within CA265_RS04080 at 981.984 kb on - strand, within CA265_RS04080 at 981.984 kb on - strand, within CA265_RS04080 at 981.985 kb on + strand, within CA265_RS04080 at 981.985 kb on + strand, within CA265_RS04080 at 981.986 kb on - strand, within CA265_RS04080 at 981.986 kb on - strand, within CA265_RS04080 at 982.051 kb on - strand, within CA265_RS04080 at 982.093 kb on + strand, within CA265_RS04080 at 982.103 kb on - strand, within CA265_RS04080 at 982.103 kb on - strand, within CA265_RS04080 at 982.103 kb on - strand, within CA265_RS04080 at 982.103 kb on - strand, within CA265_RS04080 at 982.135 kb on - strand, within CA265_RS04080 at 982.165 kb on + strand, within CA265_RS04080 at 982.265 kb on - strand at 982.333 kb on - strand at 982.368 kb on + strand at 982.423 kb on - strand at 982.442 kb on + strand at 982.482 kb on + strand at 982.505 kb on + strand at 982.505 kb on + strand at 982.509 kb on + strand at 982.578 kb on + strand at 982.578 kb on + strand at 982.610 kb on + strand at 982.611 kb on - strand at 982.683 kb on + strand at 982.703 kb on - strand at 982.734 kb on - strand, within CA265_RS04085 at 983.035 kb on - strand, within CA265_RS04085 at 983.090 kb on - strand, within CA265_RS04085 at 983.091 kb on + strand, within CA265_RS04085 at 983.091 kb on + strand, within CA265_RS04085 at 983.101 kb on - strand, within CA265_RS04085 at 983.167 kb on - strand, within CA265_RS04085 at 983.167 kb on - strand, within CA265_RS04085 at 983.295 kb on - strand, within CA265_RS04085 at 983.353 kb on - strand, within CA265_RS04085 at 983.359 kb on + strand, within CA265_RS04085 at 983.360 kb on - strand, within CA265_RS04085 at 983.365 kb on + strand, within CA265_RS04085 at 983.383 kb on - strand, within CA265_RS04085 at 983.396 kb on - strand, within CA265_RS04085 at 983.411 kb on + strand, within CA265_RS04085
Per-strain Table
Position Strand Gene LocusTag Fraction methyl 3-keto-a-D-glucopyranoside (C) remove 979,158 + CA265_RS04075 0.65 +0.4 979,175 + CA265_RS04075 0.66 +0.1 979,187 + CA265_RS04075 0.67 +0.3 979,283 + CA265_RS04075 0.73 +0.2 979,317 - CA265_RS04075 0.75 +0.1 979,395 + CA265_RS04075 0.80 +0.2 979,396 - CA265_RS04075 0.80 +0.1 979,396 - CA265_RS04075 0.80 -0.6 979,526 + CA265_RS04075 0.89 +1.2 979,526 + CA265_RS04075 0.89 +0.6 979,527 - CA265_RS04075 0.89 +0.3 979,580 - +0.2 979,602 + +0.9 979,690 + +0.7 979,722 - -0.6 979,754 + +0.2 980,026 + -0.9 980,026 + -1.3 980,221 + -0.2 980,226 + -0.8 980,230 + -2.0 980,231 - -2.2 980,237 + -1.9 980,237 + -2.2 980,238 - -1.7 980,238 - -2.5 980,245 + -0.8 980,307 - CA265_RS04080 0.12 -1.4 980,315 + CA265_RS04080 0.12 -1.8 980,315 + CA265_RS04080 0.12 -0.6 980,315 + CA265_RS04080 0.12 +0.1 980,368 + CA265_RS04080 0.14 -1.4 980,369 - CA265_RS04080 0.14 -1.5 980,389 + CA265_RS04080 0.15 -0.5 980,559 - CA265_RS04080 0.22 -3.6 980,559 - CA265_RS04080 0.22 -2.1 980,621 - CA265_RS04080 0.25 -1.2 980,621 - CA265_RS04080 0.25 -2.9 980,621 - CA265_RS04080 0.25 -1.5 980,644 - CA265_RS04080 0.26 -2.4 980,678 + CA265_RS04080 0.27 -2.5 980,679 - CA265_RS04080 0.27 -1.2 980,731 + CA265_RS04080 0.29 -2.1 980,768 - CA265_RS04080 0.31 -0.7 980,768 - CA265_RS04080 0.31 -1.5 980,768 - CA265_RS04080 0.31 -0.4 980,774 - CA265_RS04080 0.31 -1.3 980,816 + CA265_RS04080 0.33 -0.9 980,886 - CA265_RS04080 0.36 -0.2 980,899 + CA265_RS04080 0.36 -1.7 980,904 + CA265_RS04080 0.36 -0.4 980,986 - CA265_RS04080 0.40 -0.6 981,132 + CA265_RS04080 0.46 -2.9 981,133 - CA265_RS04080 0.46 -0.7 981,169 - CA265_RS04080 0.47 -0.5 981,172 + CA265_RS04080 0.47 -0.1 981,232 + CA265_RS04080 0.50 +0.2 981,326 + CA265_RS04080 0.54 -1.1 981,326 + CA265_RS04080 0.54 -0.9 981,327 - CA265_RS04080 0.54 -0.6 981,420 - CA265_RS04080 0.58 -0.3 981,422 + CA265_RS04080 0.58 -1.1 981,422 + CA265_RS04080 0.58 -1.5 981,422 + CA265_RS04080 0.58 -0.9 981,422 + CA265_RS04080 0.58 -1.6 981,422 + CA265_RS04080 0.58 -0.7 981,423 - CA265_RS04080 0.58 -1.0 981,617 + CA265_RS04080 0.66 -2.1 981,645 + CA265_RS04080 0.67 -1.0 981,646 - CA265_RS04080 0.67 -0.7 981,751 - CA265_RS04080 0.71 -1.0 981,771 - CA265_RS04080 0.72 -1.6 981,852 + CA265_RS04080 0.75 -1.8 981,883 + CA265_RS04080 0.77 -0.6 981,883 + CA265_RS04080 0.77 -0.4 981,888 - CA265_RS04080 0.77 -1.4 981,898 + CA265_RS04080 0.77 +0.4 981,984 - CA265_RS04080 0.81 -1.1 981,984 - CA265_RS04080 0.81 -1.0 981,985 + CA265_RS04080 0.81 -1.0 981,985 + CA265_RS04080 0.81 -0.9 981,986 - CA265_RS04080 0.81 -1.1 981,986 - CA265_RS04080 0.81 -0.0 982,051 - CA265_RS04080 0.84 -0.9 982,093 + CA265_RS04080 0.85 -0.1 982,103 - CA265_RS04080 0.86 -1.8 982,103 - CA265_RS04080 0.86 -0.1 982,103 - CA265_RS04080 0.86 -0.8 982,103 - CA265_RS04080 0.86 -1.8 982,135 - CA265_RS04080 0.87 -1.7 982,165 + CA265_RS04080 0.88 +0.2 982,265 - -0.8 982,333 - +0.7 982,368 + +0.7 982,423 - -1.1 982,442 + -0.7 982,482 + +0.2 982,505 + -0.2 982,505 + +1.1 982,509 + +0.0 982,578 + +0.5 982,578 + -0.0 982,610 + +0.8 982,611 - +0.3 982,683 + +0.3 982,703 - +0.0 982,734 - CA265_RS04085 0.12 -0.9 983,035 - CA265_RS04085 0.37 -0.6 983,090 - CA265_RS04085 0.41 -1.3 983,091 + CA265_RS04085 0.41 -1.1 983,091 + CA265_RS04085 0.41 -0.1 983,101 - CA265_RS04085 0.42 -1.2 983,167 - CA265_RS04085 0.47 -0.9 983,167 - CA265_RS04085 0.47 -1.3 983,295 - CA265_RS04085 0.58 -1.1 983,353 - CA265_RS04085 0.63 -1.5 983,359 + CA265_RS04085 0.63 -0.7 983,360 - CA265_RS04085 0.63 +1.2 983,365 + CA265_RS04085 0.64 -1.8 983,383 - CA265_RS04085 0.65 -0.8 983,396 - CA265_RS04085 0.66 -0.5 983,411 + CA265_RS04085 0.67 -1.5
Or see this region's nucleotide sequence