Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS02585

Experiment: methyl 3-keto-a-D-glucopyranoside (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS02580 and CA265_RS02585 are separated by 222 nucleotidesCA265_RS02585 and CA265_RS02590 are separated by 15 nucleotides CA265_RS02580: CA265_RS02580 - hypothetical protein, at 646,624 to 647,565 _RS02580 CA265_RS02585: CA265_RS02585 - SusC/RagA family protein, at 647,788 to 651,039 _RS02585 CA265_RS02590: CA265_RS02590 - RagB/SusD family nutrient uptake outer membrane protein, at 651,055 to 652,578 _RS02590 Position (kb) 647 648 649 650 651 652Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 646.805 kb on - strand, within CA265_RS02580at 646.805 kb on - strand, within CA265_RS02580at 646.833 kb on + strand, within CA265_RS02580at 646.833 kb on + strand, within CA265_RS02580at 646.873 kb on - strand, within CA265_RS02580at 646.876 kb on - strand, within CA265_RS02580at 646.886 kb on + strand, within CA265_RS02580at 646.941 kb on - strand, within CA265_RS02580at 647.019 kb on + strand, within CA265_RS02580at 647.116 kb on - strand, within CA265_RS02580at 647.120 kb on + strand, within CA265_RS02580at 647.125 kb on - strand, within CA265_RS02580at 647.138 kb on + strand, within CA265_RS02580at 647.138 kb on + strand, within CA265_RS02580at 647.139 kb on - strand, within CA265_RS02580at 647.142 kb on + strand, within CA265_RS02580at 647.143 kb on - strand, within CA265_RS02580at 647.143 kb on - strand, within CA265_RS02580at 647.210 kb on + strand, within CA265_RS02580at 647.211 kb on - strand, within CA265_RS02580at 647.211 kb on - strand, within CA265_RS02580at 647.211 kb on - strand, within CA265_RS02580at 647.376 kb on - strand, within CA265_RS02580at 647.393 kb on - strand, within CA265_RS02580at 647.497 kb on - strandat 647.557 kb on + strandat 647.557 kb on + strandat 647.558 kb on - strandat 647.568 kb on + strandat 647.662 kb on - strandat 647.686 kb on + strandat 647.710 kb on - strandat 647.728 kb on + strandat 647.729 kb on - strandat 647.730 kb on + strandat 647.730 kb on + strandat 647.730 kb on + strandat 647.730 kb on + strandat 647.731 kb on - strandat 647.731 kb on - strandat 647.754 kb on - strandat 647.842 kb on - strandat 647.915 kb on - strandat 647.915 kb on - strandat 647.915 kb on - strandat 647.952 kb on - strandat 647.952 kb on - strandat 648.038 kb on + strandat 648.039 kb on - strandat 648.039 kb on - strandat 648.042 kb on + strandat 648.042 kb on + strandat 648.043 kb on - strandat 648.043 kb on - strandat 648.043 kb on - strandat 648.055 kb on - strandat 648.155 kb on + strand, within CA265_RS02585at 648.175 kb on + strand, within CA265_RS02585at 648.202 kb on - strand, within CA265_RS02585at 648.242 kb on + strand, within CA265_RS02585at 648.270 kb on + strand, within CA265_RS02585at 648.294 kb on + strand, within CA265_RS02585at 648.294 kb on + strand, within CA265_RS02585at 648.407 kb on + strand, within CA265_RS02585at 648.441 kb on - strand, within CA265_RS02585at 648.446 kb on + strand, within CA265_RS02585at 648.508 kb on - strand, within CA265_RS02585at 648.529 kb on + strand, within CA265_RS02585at 648.533 kb on + strand, within CA265_RS02585at 648.582 kb on + strand, within CA265_RS02585at 648.583 kb on - strand, within CA265_RS02585at 648.602 kb on + strand, within CA265_RS02585at 648.603 kb on - strand, within CA265_RS02585at 648.603 kb on - strand, within CA265_RS02585at 648.741 kb on - strand, within CA265_RS02585at 648.801 kb on + strand, within CA265_RS02585at 648.809 kb on + strand, within CA265_RS02585at 648.904 kb on + strand, within CA265_RS02585at 648.915 kb on + strand, within CA265_RS02585at 648.951 kb on - strand, within CA265_RS02585at 649.081 kb on - strand, within CA265_RS02585at 649.114 kb on + strand, within CA265_RS02585at 649.142 kb on - strand, within CA265_RS02585at 649.145 kb on - strand, within CA265_RS02585at 649.165 kb on + strand, within CA265_RS02585at 649.425 kb on + strand, within CA265_RS02585at 649.478 kb on + strand, within CA265_RS02585at 649.478 kb on + strand, within CA265_RS02585at 649.485 kb on + strand, within CA265_RS02585at 649.559 kb on + strand, within CA265_RS02585at 649.600 kb on + strand, within CA265_RS02585at 649.602 kb on + strand, within CA265_RS02585at 649.602 kb on + strand, within CA265_RS02585at 649.603 kb on - strand, within CA265_RS02585at 649.690 kb on + strand, within CA265_RS02585at 649.692 kb on + strand, within CA265_RS02585at 649.696 kb on + strand, within CA265_RS02585at 649.761 kb on + strand, within CA265_RS02585at 649.922 kb on + strand, within CA265_RS02585at 649.923 kb on - strand, within CA265_RS02585at 649.973 kb on - strand, within CA265_RS02585at 649.976 kb on + strand, within CA265_RS02585at 649.977 kb on - strand, within CA265_RS02585at 650.045 kb on + strand, within CA265_RS02585at 650.064 kb on - strand, within CA265_RS02585at 650.064 kb on - strand, within CA265_RS02585at 650.080 kb on + strand, within CA265_RS02585at 650.081 kb on - strand, within CA265_RS02585at 650.209 kb on - strand, within CA265_RS02585at 650.229 kb on + strand, within CA265_RS02585at 650.229 kb on + strand, within CA265_RS02585at 650.230 kb on - strand, within CA265_RS02585at 650.230 kb on - strand, within CA265_RS02585at 650.309 kb on + strand, within CA265_RS02585at 650.310 kb on - strand, within CA265_RS02585at 650.366 kb on + strand, within CA265_RS02585at 650.369 kb on - strand, within CA265_RS02585at 650.369 kb on - strand, within CA265_RS02585at 650.375 kb on - strand, within CA265_RS02585at 650.378 kb on - strand, within CA265_RS02585at 650.378 kb on - strand, within CA265_RS02585at 650.378 kb on - strand, within CA265_RS02585at 650.424 kb on + strand, within CA265_RS02585at 650.424 kb on + strand, within CA265_RS02585at 650.431 kb on - strand, within CA265_RS02585at 650.512 kb on - strand, within CA265_RS02585at 650.666 kb on - strand, within CA265_RS02585at 650.666 kb on - strand, within CA265_RS02585at 650.666 kb on - strand, within CA265_RS02585at 650.830 kb on - strandat 650.834 kb on + strandat 650.834 kb on + strandat 650.835 kb on - strandat 650.913 kb on + strandat 651.013 kb on - strandat 651.023 kb on + strandat 651.029 kb on + strandat 651.035 kb on + strandat 651.073 kb on + strandat 651.076 kb on - strandat 651.126 kb on + strandat 651.126 kb on + strandat 651.183 kb on + strandat 651.274 kb on - strand, within CA265_RS02590at 651.274 kb on - strand, within CA265_RS02590at 651.274 kb on - strand, within CA265_RS02590at 651.322 kb on - strand, within CA265_RS02590at 651.328 kb on - strand, within CA265_RS02590at 651.328 kb on - strand, within CA265_RS02590at 651.381 kb on - strand, within CA265_RS02590at 651.466 kb on + strand, within CA265_RS02590at 651.466 kb on + strand, within CA265_RS02590at 651.466 kb on + strand, within CA265_RS02590at 651.541 kb on - strand, within CA265_RS02590at 651.623 kb on + strand, within CA265_RS02590at 651.720 kb on - strand, within CA265_RS02590at 651.720 kb on - strand, within CA265_RS02590at 651.720 kb on - strand, within CA265_RS02590at 651.721 kb on + strand, within CA265_RS02590at 651.775 kb on - strand, within CA265_RS02590at 651.818 kb on + strand, within CA265_RS02590at 651.818 kb on + strand, within CA265_RS02590at 651.819 kb on - strand, within CA265_RS02590at 651.852 kb on + strand, within CA265_RS02590at 651.852 kb on + strand, within CA265_RS02590at 651.888 kb on + strand, within CA265_RS02590at 651.888 kb on + strand, within CA265_RS02590at 651.889 kb on - strand, within CA265_RS02590at 651.918 kb on - strand, within CA265_RS02590at 651.930 kb on + strand, within CA265_RS02590at 651.947 kb on - strand, within CA265_RS02590at 651.964 kb on + strand, within CA265_RS02590at 651.986 kb on - strand, within CA265_RS02590

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Per-strain Table

Position Strand Gene LocusTag Fraction methyl 3-keto-a-D-glucopyranoside (C)
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646,805 - CA265_RS02580 0.19 -0.9
646,805 - CA265_RS02580 0.19 -0.5
646,833 + CA265_RS02580 0.22 -1.2
646,833 + CA265_RS02580 0.22 +0.4
646,873 - CA265_RS02580 0.26 +0.6
646,876 - CA265_RS02580 0.27 -0.4
646,886 + CA265_RS02580 0.28 -1.1
646,941 - CA265_RS02580 0.34 +0.5
647,019 + CA265_RS02580 0.42 +0.2
647,116 - CA265_RS02580 0.52 +0.5
647,120 + CA265_RS02580 0.53 +1.4
647,125 - CA265_RS02580 0.53 +0.5
647,138 + CA265_RS02580 0.55 +0.0
647,138 + CA265_RS02580 0.55 +0.0
647,139 - CA265_RS02580 0.55 +0.5
647,142 + CA265_RS02580 0.55 +0.0
647,143 - CA265_RS02580 0.55 -0.1
647,143 - CA265_RS02580 0.55 -0.4
647,210 + CA265_RS02580 0.62 -0.7
647,211 - CA265_RS02580 0.62 -0.3
647,211 - CA265_RS02580 0.62 +0.0
647,211 - CA265_RS02580 0.62 -0.7
647,376 - CA265_RS02580 0.80 +0.1
647,393 - CA265_RS02580 0.82 -0.6
647,497 - +0.0
647,557 + +0.7
647,557 + -0.8
647,558 - -0.8
647,568 + -2.0
647,662 - -0.5
647,686 + +0.6
647,710 - -0.7
647,728 + +0.5
647,729 - +1.8
647,730 + +1.1
647,730 + +0.4
647,730 + +0.6
647,730 + -0.2
647,731 - -0.5
647,731 - -0.7
647,754 - +0.1
647,842 - +0.3
647,915 - +1.0
647,915 - -0.2
647,915 - -0.5
647,952 - +0.1
647,952 - +0.1
648,038 + -1.8
648,039 - -0.4
648,039 - +0.7
648,042 + +2.0
648,042 + +0.6
648,043 - +0.4
648,043 - -0.1
648,043 - -0.1
648,055 - -0.3
648,155 + CA265_RS02585 0.11 -0.5
648,175 + CA265_RS02585 0.12 -0.3
648,202 - CA265_RS02585 0.13 -2.4
648,242 + CA265_RS02585 0.14 -0.6
648,270 + CA265_RS02585 0.15 -1.5
648,294 + CA265_RS02585 0.16 -0.0
648,294 + CA265_RS02585 0.16 +1.0
648,407 + CA265_RS02585 0.19 +0.1
648,441 - CA265_RS02585 0.20 -0.6
648,446 + CA265_RS02585 0.20 -0.1
648,508 - CA265_RS02585 0.22 -0.0
648,529 + CA265_RS02585 0.23 -0.4
648,533 + CA265_RS02585 0.23 -1.8
648,582 + CA265_RS02585 0.24 +0.4
648,583 - CA265_RS02585 0.24 -0.4
648,602 + CA265_RS02585 0.25 +0.4
648,603 - CA265_RS02585 0.25 -2.0
648,603 - CA265_RS02585 0.25 +0.7
648,741 - CA265_RS02585 0.29 -0.2
648,801 + CA265_RS02585 0.31 +0.3
648,809 + CA265_RS02585 0.31 +0.0
648,904 + CA265_RS02585 0.34 -0.5
648,915 + CA265_RS02585 0.35 -0.3
648,951 - CA265_RS02585 0.36 -0.3
649,081 - CA265_RS02585 0.40 -0.4
649,114 + CA265_RS02585 0.41 -0.6
649,142 - CA265_RS02585 0.42 -1.7
649,145 - CA265_RS02585 0.42 +0.2
649,165 + CA265_RS02585 0.42 -0.8
649,425 + CA265_RS02585 0.50 -0.9
649,478 + CA265_RS02585 0.52 -0.4
649,478 + CA265_RS02585 0.52 -1.1
649,485 + CA265_RS02585 0.52 -0.8
649,559 + CA265_RS02585 0.54 -0.6
649,600 + CA265_RS02585 0.56 +0.9
649,602 + CA265_RS02585 0.56 -0.5
649,602 + CA265_RS02585 0.56 -0.8
649,603 - CA265_RS02585 0.56 -1.0
649,690 + CA265_RS02585 0.58 -0.1
649,692 + CA265_RS02585 0.59 -0.3
649,696 + CA265_RS02585 0.59 +0.9
649,761 + CA265_RS02585 0.61 +0.9
649,922 + CA265_RS02585 0.66 -0.1
649,923 - CA265_RS02585 0.66 -2.2
649,973 - CA265_RS02585 0.67 -0.9
649,976 + CA265_RS02585 0.67 -1.2
649,977 - CA265_RS02585 0.67 +0.3
650,045 + CA265_RS02585 0.69 -0.1
650,064 - CA265_RS02585 0.70 -0.6
650,064 - CA265_RS02585 0.70 +0.5
650,080 + CA265_RS02585 0.70 -1.1
650,081 - CA265_RS02585 0.71 -0.3
650,209 - CA265_RS02585 0.74 -1.0
650,229 + CA265_RS02585 0.75 +0.1
650,229 + CA265_RS02585 0.75 -1.6
650,230 - CA265_RS02585 0.75 +0.0
650,230 - CA265_RS02585 0.75 -0.7
650,309 + CA265_RS02585 0.78 +0.1
650,310 - CA265_RS02585 0.78 -0.1
650,366 + CA265_RS02585 0.79 -0.4
650,369 - CA265_RS02585 0.79 +0.4
650,369 - CA265_RS02585 0.79 +0.5
650,375 - CA265_RS02585 0.80 -1.2
650,378 - CA265_RS02585 0.80 -1.4
650,378 - CA265_RS02585 0.80 -0.6
650,378 - CA265_RS02585 0.80 +0.4
650,424 + CA265_RS02585 0.81 +0.0
650,424 + CA265_RS02585 0.81 +0.2
650,431 - CA265_RS02585 0.81 -0.0
650,512 - CA265_RS02585 0.84 +1.1
650,666 - CA265_RS02585 0.88 +0.3
650,666 - CA265_RS02585 0.88 -0.6
650,666 - CA265_RS02585 0.88 -0.3
650,830 - -0.3
650,834 + +0.7
650,834 + -0.1
650,835 - +0.6
650,913 + -0.1
651,013 - +0.9
651,023 + -0.6
651,029 + -0.2
651,035 + -0.5
651,073 + -0.9
651,076 - +0.3
651,126 + -0.1
651,126 + -0.2
651,183 + +0.0
651,274 - CA265_RS02590 0.14 -1.2
651,274 - CA265_RS02590 0.14 +0.2
651,274 - CA265_RS02590 0.14 -0.6
651,322 - CA265_RS02590 0.18 +0.5
651,328 - CA265_RS02590 0.18 +0.4
651,328 - CA265_RS02590 0.18 -0.1
651,381 - CA265_RS02590 0.21 +0.2
651,466 + CA265_RS02590 0.27 -0.7
651,466 + CA265_RS02590 0.27 -0.9
651,466 + CA265_RS02590 0.27 +1.2
651,541 - CA265_RS02590 0.32 +0.6
651,623 + CA265_RS02590 0.37 -0.8
651,720 - CA265_RS02590 0.44 -0.1
651,720 - CA265_RS02590 0.44 -0.3
651,720 - CA265_RS02590 0.44 -4.6
651,721 + CA265_RS02590 0.44 +0.3
651,775 - CA265_RS02590 0.47 +0.0
651,818 + CA265_RS02590 0.50 -1.4
651,818 + CA265_RS02590 0.50 +1.6
651,819 - CA265_RS02590 0.50 +0.8
651,852 + CA265_RS02590 0.52 +0.2
651,852 + CA265_RS02590 0.52 -0.2
651,888 + CA265_RS02590 0.55 +0.6
651,888 + CA265_RS02590 0.55 -0.1
651,889 - CA265_RS02590 0.55 +0.5
651,918 - CA265_RS02590 0.57 -0.7
651,930 + CA265_RS02590 0.57 +0.5
651,947 - CA265_RS02590 0.59 -0.1
651,964 + CA265_RS02590 0.60 +0.6
651,986 - CA265_RS02590 0.61 -0.2

Or see this region's nucleotide sequence