Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_18970

Experiment: 1-ethyl-3-methylimidazolium acetate 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_18960 and AO356_18965 are separated by 105 nucleotidesAO356_18965 and AO356_18970 overlap by 4 nucleotidesAO356_18970 and AO356_18975 are separated by 143 nucleotides AO356_18960: AO356_18960 - hypothetical protein, at 4,263,277 to 4,263,876 _18960 AO356_18965: AO356_18965 - transcriptional regulator, at 4,263,982 to 4,264,659 _18965 AO356_18970: AO356_18970 - histidine kinase, at 4,264,656 to 4,266,002 _18970 AO356_18975: AO356_18975 - AraC family transcriptional regulator, at 4,266,146 to 4,267,144 _18975 Position (kb) 4264 4265 4266 4267Strain fitness (log2 ratio) -2 -1 0 1at 4263.784 kb on - strand, within AO356_18960at 4263.850 kb on + strandat 4263.850 kb on + strandat 4263.850 kb on + strandat 4263.850 kb on + strandat 4263.851 kb on - strandat 4263.851 kb on - strandat 4263.851 kb on - strandat 4263.851 kb on - strandat 4263.851 kb on - strandat 4263.865 kb on + strandat 4263.865 kb on + strandat 4263.865 kb on + strandat 4263.865 kb on + strandat 4263.865 kb on + strandat 4263.866 kb on - strandat 4263.866 kb on - strandat 4263.866 kb on - strandat 4263.874 kb on + strandat 4263.875 kb on - strandat 4263.894 kb on + strandat 4264.093 kb on + strand, within AO356_18965at 4264.094 kb on - strand, within AO356_18965at 4264.273 kb on + strand, within AO356_18965at 4264.273 kb on + strand, within AO356_18965at 4264.273 kb on + strand, within AO356_18965at 4264.274 kb on - strand, within AO356_18965at 4264.274 kb on - strand, within AO356_18965at 4264.459 kb on + strand, within AO356_18965at 4264.460 kb on - strand, within AO356_18965at 4264.563 kb on - strand, within AO356_18965at 4264.633 kb on + strandat 4264.903 kb on - strand, within AO356_18970at 4264.903 kb on - strand, within AO356_18970at 4264.903 kb on - strand, within AO356_18970at 4264.908 kb on + strand, within AO356_18970at 4264.908 kb on + strand, within AO356_18970at 4264.908 kb on + strand, within AO356_18970at 4264.908 kb on + strand, within AO356_18970at 4264.908 kb on + strand, within AO356_18970at 4264.908 kb on + strand, within AO356_18970at 4264.908 kb on + strand, within AO356_18970at 4264.908 kb on + strand, within AO356_18970at 4264.909 kb on - strand, within AO356_18970at 4264.909 kb on - strand, within AO356_18970at 4264.909 kb on - strand, within AO356_18970at 4264.909 kb on - strand, within AO356_18970at 4264.909 kb on - strand, within AO356_18970at 4264.968 kb on + strand, within AO356_18970at 4264.968 kb on + strand, within AO356_18970at 4264.968 kb on + strand, within AO356_18970at 4264.968 kb on + strand, within AO356_18970at 4264.968 kb on + strand, within AO356_18970at 4264.968 kb on + strand, within AO356_18970at 4264.969 kb on - strand, within AO356_18970at 4264.980 kb on + strand, within AO356_18970at 4265.043 kb on + strand, within AO356_18970at 4265.043 kb on + strand, within AO356_18970at 4265.044 kb on - strand, within AO356_18970at 4265.044 kb on - strand, within AO356_18970at 4265.118 kb on + strand, within AO356_18970at 4265.154 kb on + strand, within AO356_18970at 4265.289 kb on - strand, within AO356_18970at 4265.343 kb on + strand, within AO356_18970at 4265.344 kb on - strand, within AO356_18970at 4265.344 kb on - strand, within AO356_18970at 4265.344 kb on - strand, within AO356_18970at 4265.505 kb on - strand, within AO356_18970at 4265.505 kb on - strand, within AO356_18970at 4265.505 kb on - strand, within AO356_18970at 4265.505 kb on - strand, within AO356_18970at 4265.505 kb on - strand, within AO356_18970at 4265.505 kb on - strand, within AO356_18970at 4266.165 kb on + strandat 4266.165 kb on + strandat 4266.166 kb on - strandat 4266.166 kb on - strandat 4266.282 kb on + strand, within AO356_18975at 4266.282 kb on + strand, within AO356_18975at 4266.282 kb on + strand, within AO356_18975at 4266.283 kb on - strand, within AO356_18975at 4266.593 kb on + strand, within AO356_18975at 4266.594 kb on - strand, within AO356_18975at 4266.614 kb on + strand, within AO356_18975at 4266.614 kb on + strand, within AO356_18975at 4266.614 kb on + strand, within AO356_18975at 4266.614 kb on + strand, within AO356_18975at 4266.614 kb on + strand, within AO356_18975at 4266.614 kb on + strand, within AO356_18975at 4266.614 kb on + strand, within AO356_18975at 4266.614 kb on + strand, within AO356_18975at 4266.614 kb on + strand, within AO356_18975at 4266.614 kb on + strand, within AO356_18975at 4266.614 kb on + strand, within AO356_18975at 4266.614 kb on + strand, within AO356_18975at 4266.614 kb on + strand, within AO356_18975at 4266.614 kb on + strand, within AO356_18975at 4266.614 kb on + strand, within AO356_18975at 4266.615 kb on - strand, within AO356_18975at 4266.615 kb on - strand, within AO356_18975at 4266.615 kb on - strand, within AO356_18975at 4266.615 kb on - strand, within AO356_18975at 4266.615 kb on - strand, within AO356_18975at 4266.615 kb on - strand, within AO356_18975at 4266.615 kb on - strand, within AO356_18975at 4266.615 kb on - strand, within AO356_18975at 4266.837 kb on + strand, within AO356_18975at 4266.837 kb on + strand, within AO356_18975at 4266.838 kb on - strand, within AO356_18975at 4266.923 kb on - strand, within AO356_18975at 4266.948 kb on + strand, within AO356_18975at 4266.949 kb on - strand, within AO356_18975at 4266.949 kb on - strand, within AO356_18975

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 10 mM
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4,263,784 - AO356_18960 0.84 -0.4
4,263,850 + -0.8
4,263,850 + -0.3
4,263,850 + -0.8
4,263,850 + +0.5
4,263,851 - -0.6
4,263,851 - -0.9
4,263,851 - -0.6
4,263,851 - +0.2
4,263,851 - -1.2
4,263,865 + -1.0
4,263,865 + -2.7
4,263,865 + +0.3
4,263,865 + +0.9
4,263,865 + -1.6
4,263,866 - -0.4
4,263,866 - +0.1
4,263,866 - +1.2
4,263,874 + +1.0
4,263,875 - +0.3
4,263,894 + +0.7
4,264,093 + AO356_18965 0.16 -0.7
4,264,094 - AO356_18965 0.17 +0.4
4,264,273 + AO356_18965 0.43 +0.1
4,264,273 + AO356_18965 0.43 +0.9
4,264,273 + AO356_18965 0.43 -0.5
4,264,274 - AO356_18965 0.43 -2.3
4,264,274 - AO356_18965 0.43 -1.4
4,264,459 + AO356_18965 0.70 -2.1
4,264,460 - AO356_18965 0.71 -0.6
4,264,563 - AO356_18965 0.86 -0.9
4,264,633 + -0.8
4,264,903 - AO356_18970 0.18 -1.1
4,264,903 - AO356_18970 0.18 -0.9
4,264,903 - AO356_18970 0.18 -0.7
4,264,908 + AO356_18970 0.19 -1.4
4,264,908 + AO356_18970 0.19 +0.2
4,264,908 + AO356_18970 0.19 -0.9
4,264,908 + AO356_18970 0.19 +0.8
4,264,908 + AO356_18970 0.19 +0.7
4,264,908 + AO356_18970 0.19 +0.1
4,264,908 + AO356_18970 0.19 -0.5
4,264,908 + AO356_18970 0.19 -0.4
4,264,909 - AO356_18970 0.19 -0.1
4,264,909 - AO356_18970 0.19 -0.0
4,264,909 - AO356_18970 0.19 -0.8
4,264,909 - AO356_18970 0.19 -1.2
4,264,909 - AO356_18970 0.19 -1.6
4,264,968 + AO356_18970 0.23 +0.0
4,264,968 + AO356_18970 0.23 -1.4
4,264,968 + AO356_18970 0.23 -1.0
4,264,968 + AO356_18970 0.23 +0.6
4,264,968 + AO356_18970 0.23 +0.1
4,264,968 + AO356_18970 0.23 +0.1
4,264,969 - AO356_18970 0.23 -0.2
4,264,980 + AO356_18970 0.24 -0.5
4,265,043 + AO356_18970 0.29 -0.4
4,265,043 + AO356_18970 0.29 +0.3
4,265,044 - AO356_18970 0.29 +0.4
4,265,044 - AO356_18970 0.29 -0.4
4,265,118 + AO356_18970 0.34 -1.6
4,265,154 + AO356_18970 0.37 -0.1
4,265,289 - AO356_18970 0.47 -1.6
4,265,343 + AO356_18970 0.51 +0.2
4,265,344 - AO356_18970 0.51 +0.0
4,265,344 - AO356_18970 0.51 -0.3
4,265,344 - AO356_18970 0.51 -0.9
4,265,505 - AO356_18970 0.63 -0.8
4,265,505 - AO356_18970 0.63 -0.0
4,265,505 - AO356_18970 0.63 +0.4
4,265,505 - AO356_18970 0.63 -0.7
4,265,505 - AO356_18970 0.63 +0.2
4,265,505 - AO356_18970 0.63 -2.2
4,266,165 + -0.8
4,266,165 + -0.2
4,266,166 - -0.8
4,266,166 - +0.5
4,266,282 + AO356_18975 0.14 +0.4
4,266,282 + AO356_18975 0.14 +1.1
4,266,282 + AO356_18975 0.14 -0.3
4,266,283 - AO356_18975 0.14 +0.2
4,266,593 + AO356_18975 0.45 -0.1
4,266,594 - AO356_18975 0.45 -0.8
4,266,614 + AO356_18975 0.47 +1.1
4,266,614 + AO356_18975 0.47 +1.4
4,266,614 + AO356_18975 0.47 +0.2
4,266,614 + AO356_18975 0.47 +0.6
4,266,614 + AO356_18975 0.47 -0.3
4,266,614 + AO356_18975 0.47 +0.4
4,266,614 + AO356_18975 0.47 -0.9
4,266,614 + AO356_18975 0.47 +0.2
4,266,614 + AO356_18975 0.47 +0.7
4,266,614 + AO356_18975 0.47 -0.2
4,266,614 + AO356_18975 0.47 +0.7
4,266,614 + AO356_18975 0.47 +0.2
4,266,614 + AO356_18975 0.47 +0.1
4,266,614 + AO356_18975 0.47 -0.1
4,266,614 + AO356_18975 0.47 -1.4
4,266,615 - AO356_18975 0.47 +0.9
4,266,615 - AO356_18975 0.47 +0.2
4,266,615 - AO356_18975 0.47 +1.3
4,266,615 - AO356_18975 0.47 +0.2
4,266,615 - AO356_18975 0.47 -0.2
4,266,615 - AO356_18975 0.47 +0.5
4,266,615 - AO356_18975 0.47 +0.8
4,266,615 - AO356_18975 0.47 -1.1
4,266,837 + AO356_18975 0.69 -0.1
4,266,837 + AO356_18975 0.69 +0.2
4,266,838 - AO356_18975 0.69 +0.5
4,266,923 - AO356_18975 0.78 +0.9
4,266,948 + AO356_18975 0.80 -1.0
4,266,949 - AO356_18975 0.80 -0.8
4,266,949 - AO356_18975 0.80 -0.4

Or see this region's nucleotide sequence