Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_14945

Experiment: 1-ethyl-3-methylimidazolium acetate 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_14940 and AO356_14945 are separated by 248 nucleotidesAO356_14945 and AO356_14950 overlap by 4 nucleotidesAO356_14950 and AO356_14955 are separated by 18 nucleotides AO356_14940: AO356_14940 - 3,4-dihydroxy-2-butanone 4-phosphate synthase, at 3,380,035 to 3,381,126 _14940 AO356_14945: AO356_14945 - 6,7-dimethyl-8-ribityllumazine synthase, at 3,381,375 to 3,381,851 _14945 AO356_14950: AO356_14950 - antitermination protein NusB, at 3,381,848 to 3,382,348 _14950 AO356_14955: AO356_14955 - thiamine monophosphate kinase, at 3,382,367 to 3,383,332 _14955 Position (kb) 3381 3382Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3380.646 kb on + strand, within AO356_14940at 3380.646 kb on + strand, within AO356_14940at 3380.647 kb on - strand, within AO356_14940at 3380.647 kb on - strand, within AO356_14940at 3380.647 kb on - strand, within AO356_14940at 3380.647 kb on - strand, within AO356_14940at 3380.757 kb on + strand, within AO356_14940at 3380.762 kb on + strand, within AO356_14940at 3380.762 kb on + strand, within AO356_14940at 3380.762 kb on + strand, within AO356_14940at 3380.762 kb on + strand, within AO356_14940at 3380.762 kb on + strand, within AO356_14940at 3380.762 kb on + strand, within AO356_14940at 3380.762 kb on + strand, within AO356_14940at 3380.763 kb on - strand, within AO356_14940at 3380.763 kb on - strand, within AO356_14940at 3380.763 kb on - strand, within AO356_14940at 3380.989 kb on + strand, within AO356_14940at 3380.989 kb on + strand, within AO356_14940at 3380.989 kb on + strand, within AO356_14940at 3380.989 kb on + strand, within AO356_14940at 3381.072 kb on + strandat 3381.104 kb on + strandat 3381.104 kb on + strandat 3381.109 kb on + strandat 3381.109 kb on + strandat 3381.109 kb on + strandat 3381.124 kb on + strandat 3381.158 kb on + strandat 3381.158 kb on + strandat 3381.158 kb on + strandat 3381.158 kb on + strandat 3381.164 kb on + strandat 3381.168 kb on + strandat 3381.168 kb on + strandat 3381.168 kb on + strandat 3381.168 kb on + strandat 3381.168 kb on + strandat 3381.168 kb on + strandat 3381.235 kb on + strandat 3381.317 kb on + strandat 3381.317 kb on + strandat 3381.317 kb on + strandat 3381.320 kb on + strandat 3381.340 kb on + strandat 3381.340 kb on + strandat 3381.340 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 10 mM
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3,380,646 + AO356_14940 0.56 -0.3
3,380,646 + AO356_14940 0.56 -0.6
3,380,647 - AO356_14940 0.56 -2.8
3,380,647 - AO356_14940 0.56 -1.0
3,380,647 - AO356_14940 0.56 -0.5
3,380,647 - AO356_14940 0.56 -1.3
3,380,757 + AO356_14940 0.66 +0.1
3,380,762 + AO356_14940 0.67 -2.3
3,380,762 + AO356_14940 0.67 -1.4
3,380,762 + AO356_14940 0.67 -2.1
3,380,762 + AO356_14940 0.67 -1.8
3,380,762 + AO356_14940 0.67 -1.7
3,380,762 + AO356_14940 0.67 -0.4
3,380,762 + AO356_14940 0.67 -0.7
3,380,763 - AO356_14940 0.67 +1.0
3,380,763 - AO356_14940 0.67 -0.3
3,380,763 - AO356_14940 0.67 -0.5
3,380,989 + AO356_14940 0.87 -1.3
3,380,989 + AO356_14940 0.87 -0.9
3,380,989 + AO356_14940 0.87 -1.0
3,380,989 + AO356_14940 0.87 -0.8
3,381,072 + -1.5
3,381,104 + +1.2
3,381,104 + +1.4
3,381,109 + +0.5
3,381,109 + -0.3
3,381,109 + -0.1
3,381,124 + -0.5
3,381,158 + +0.1
3,381,158 + -0.5
3,381,158 + -1.9
3,381,158 + +1.3
3,381,164 + -1.0
3,381,168 + -0.4
3,381,168 + +0.6
3,381,168 + +0.8
3,381,168 + -0.6
3,381,168 + +0.5
3,381,168 + +0.2
3,381,235 + -0.5
3,381,317 + -0.1
3,381,317 + -0.3
3,381,317 + +2.0
3,381,320 + +0.2
3,381,340 + -1.5
3,381,340 + +0.1
3,381,340 + -0.4

Or see this region's nucleotide sequence