Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_09775

Experiment: 1-ethyl-3-methylimidazolium acetate 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_09770 and AO356_09775 are separated by 214 nucleotidesAO356_09775 and AO356_09780 are separated by 32 nucleotides AO356_09770: AO356_09770 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, at 2,214,099 to 2,215,628 _09770 AO356_09775: AO356_09775 - peptidase M23, at 2,215,843 to 2,217,135 _09775 AO356_09780: AO356_09780 - peptidase S41, at 2,217,168 to 2,218,484 _09780 Position (kb) 2215 2216 2217 2218Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2215.665 kb on - strandat 2215.758 kb on + strandat 2215.759 kb on - strandat 2215.806 kb on + strandat 2215.806 kb on + strandat 2215.806 kb on + strandat 2215.806 kb on + strandat 2215.806 kb on + strandat 2215.806 kb on + strandat 2215.807 kb on - strandat 2215.807 kb on - strandat 2215.807 kb on - strandat 2215.807 kb on - strandat 2215.807 kb on - strandat 2215.807 kb on - strandat 2215.807 kb on - strandat 2215.809 kb on + strandat 2215.809 kb on + strandat 2215.809 kb on + strandat 2215.809 kb on + strandat 2215.809 kb on + strandat 2215.809 kb on + strandat 2215.810 kb on - strandat 2215.810 kb on - strandat 2215.810 kb on - strandat 2215.810 kb on - strandat 2215.842 kb on + strandat 2215.842 kb on + strandat 2215.843 kb on - strandat 2215.843 kb on - strandat 2215.860 kb on - strandat 2216.203 kb on + strand, within AO356_09775at 2216.203 kb on + strand, within AO356_09775at 2216.204 kb on - strand, within AO356_09775at 2216.251 kb on - strand, within AO356_09775at 2216.260 kb on + strand, within AO356_09775at 2216.260 kb on + strand, within AO356_09775at 2216.260 kb on + strand, within AO356_09775at 2216.260 kb on + strand, within AO356_09775at 2216.260 kb on + strand, within AO356_09775at 2216.260 kb on + strand, within AO356_09775at 2216.260 kb on + strand, within AO356_09775at 2216.260 kb on + strand, within AO356_09775at 2216.260 kb on + strand, within AO356_09775at 2216.260 kb on + strand, within AO356_09775at 2216.260 kb on + strand, within AO356_09775at 2216.260 kb on + strand, within AO356_09775at 2216.261 kb on - strand, within AO356_09775at 2216.261 kb on - strand, within AO356_09775at 2216.261 kb on - strand, within AO356_09775at 2216.261 kb on - strand, within AO356_09775at 2216.261 kb on - strand, within AO356_09775at 2216.261 kb on - strand, within AO356_09775at 2216.263 kb on + strand, within AO356_09775at 2216.263 kb on + strand, within AO356_09775at 2216.263 kb on + strand, within AO356_09775at 2216.263 kb on + strand, within AO356_09775at 2216.263 kb on + strand, within AO356_09775at 2216.264 kb on - strand, within AO356_09775at 2216.264 kb on - strand, within AO356_09775at 2216.264 kb on - strand, within AO356_09775at 2216.264 kb on - strand, within AO356_09775at 2216.269 kb on + strand, within AO356_09775at 2216.269 kb on + strand, within AO356_09775at 2216.269 kb on + strand, within AO356_09775at 2216.269 kb on + strand, within AO356_09775at 2216.867 kb on + strand, within AO356_09775at 2216.867 kb on + strand, within AO356_09775at 2216.867 kb on + strand, within AO356_09775at 2216.868 kb on - strand, within AO356_09775at 2216.868 kb on - strand, within AO356_09775at 2216.868 kb on - strand, within AO356_09775at 2216.868 kb on - strand, within AO356_09775at 2216.953 kb on + strand, within AO356_09775at 2216.954 kb on - strand, within AO356_09775at 2216.954 kb on - strand, within AO356_09775at 2216.954 kb on - strand, within AO356_09775at 2217.070 kb on + strandat 2217.071 kb on - strandat 2217.071 kb on - strandat 2217.134 kb on - strandat 2217.148 kb on + strandat 2217.148 kb on + strandat 2217.148 kb on + strandat 2217.148 kb on + strandat 2217.148 kb on + strandat 2217.148 kb on + strandat 2217.148 kb on + strandat 2217.148 kb on + strandat 2217.149 kb on - strandat 2217.149 kb on - strandat 2217.149 kb on - strandat 2217.149 kb on - strandat 2217.149 kb on - strandat 2217.149 kb on - strandat 2217.149 kb on - strandat 2217.151 kb on + strandat 2217.152 kb on - strandat 2217.188 kb on + strandat 2217.188 kb on + strandat 2217.188 kb on + strandat 2217.436 kb on - strand, within AO356_09780at 2217.784 kb on - strand, within AO356_09780at 2217.789 kb on + strand, within AO356_09780at 2217.790 kb on - strand, within AO356_09780at 2217.790 kb on - strand, within AO356_09780at 2217.790 kb on - strand, within AO356_09780at 2217.903 kb on - strand, within AO356_09780at 2217.919 kb on + strand, within AO356_09780at 2217.920 kb on - strand, within AO356_09780at 2217.975 kb on + strand, within AO356_09780

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 10 mM
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2,215,665 - -0.3
2,215,758 + -0.5
2,215,759 - +0.7
2,215,806 + +1.2
2,215,806 + +0.8
2,215,806 + +1.1
2,215,806 + +1.8
2,215,806 + +0.1
2,215,806 + +0.4
2,215,807 - +1.6
2,215,807 - +0.5
2,215,807 - -0.4
2,215,807 - -1.6
2,215,807 - -0.9
2,215,807 - +0.0
2,215,807 - -1.1
2,215,809 + -0.8
2,215,809 + +0.2
2,215,809 + +0.5
2,215,809 + +1.6
2,215,809 + +0.8
2,215,809 + -1.8
2,215,810 - -0.5
2,215,810 - -2.0
2,215,810 - -0.4
2,215,810 - -1.0
2,215,842 + -0.8
2,215,842 + -0.9
2,215,843 - -1.7
2,215,843 - +1.1
2,215,860 - -0.5
2,216,203 + AO356_09775 0.28 -2.1
2,216,203 + AO356_09775 0.28 -0.6
2,216,204 - AO356_09775 0.28 -0.8
2,216,251 - AO356_09775 0.32 -1.1
2,216,260 + AO356_09775 0.32 -0.3
2,216,260 + AO356_09775 0.32 -0.7
2,216,260 + AO356_09775 0.32 -0.8
2,216,260 + AO356_09775 0.32 -0.5
2,216,260 + AO356_09775 0.32 -0.1
2,216,260 + AO356_09775 0.32 -0.4
2,216,260 + AO356_09775 0.32 -2.4
2,216,260 + AO356_09775 0.32 -0.8
2,216,260 + AO356_09775 0.32 -1.0
2,216,260 + AO356_09775 0.32 -0.8
2,216,260 + AO356_09775 0.32 -2.9
2,216,260 + AO356_09775 0.32 +0.1
2,216,261 - AO356_09775 0.32 -1.4
2,216,261 - AO356_09775 0.32 +0.2
2,216,261 - AO356_09775 0.32 -2.6
2,216,261 - AO356_09775 0.32 -0.5
2,216,261 - AO356_09775 0.32 -0.6
2,216,261 - AO356_09775 0.32 +0.2
2,216,263 + AO356_09775 0.32 -1.5
2,216,263 + AO356_09775 0.32 -2.3
2,216,263 + AO356_09775 0.32 -0.8
2,216,263 + AO356_09775 0.32 -1.3
2,216,263 + AO356_09775 0.32 -2.4
2,216,264 - AO356_09775 0.33 -0.0
2,216,264 - AO356_09775 0.33 -1.4
2,216,264 - AO356_09775 0.33 +3.5
2,216,264 - AO356_09775 0.33 -0.2
2,216,269 + AO356_09775 0.33 -1.1
2,216,269 + AO356_09775 0.33 -0.3
2,216,269 + AO356_09775 0.33 -0.7
2,216,269 + AO356_09775 0.33 -1.0
2,216,867 + AO356_09775 0.79 -1.1
2,216,867 + AO356_09775 0.79 -0.2
2,216,867 + AO356_09775 0.79 -0.7
2,216,868 - AO356_09775 0.79 +0.7
2,216,868 - AO356_09775 0.79 +0.2
2,216,868 - AO356_09775 0.79 +1.1
2,216,868 - AO356_09775 0.79 +0.3
2,216,953 + AO356_09775 0.86 -0.8
2,216,954 - AO356_09775 0.86 -1.8
2,216,954 - AO356_09775 0.86 +0.4
2,216,954 - AO356_09775 0.86 -1.7
2,217,070 + -2.2
2,217,071 - +0.6
2,217,071 - +0.7
2,217,134 - -0.7
2,217,148 + +0.2
2,217,148 + +0.2
2,217,148 + -0.2
2,217,148 + +0.2
2,217,148 + +0.2
2,217,148 + -0.6
2,217,148 + -0.1
2,217,148 + -0.4
2,217,149 - +1.0
2,217,149 - -0.2
2,217,149 - -0.5
2,217,149 - +0.5
2,217,149 - +0.6
2,217,149 - -0.9
2,217,149 - +0.2
2,217,151 + -0.4
2,217,152 - -0.6
2,217,188 + +0.2
2,217,188 + +0.4
2,217,188 + -0.9
2,217,436 - AO356_09780 0.20 -0.4
2,217,784 - AO356_09780 0.47 -0.2
2,217,789 + AO356_09780 0.47 +0.3
2,217,790 - AO356_09780 0.47 -0.4
2,217,790 - AO356_09780 0.47 +0.1
2,217,790 - AO356_09780 0.47 -1.5
2,217,903 - AO356_09780 0.56 -2.4
2,217,919 + AO356_09780 0.57 -0.5
2,217,920 - AO356_09780 0.57 +1.0
2,217,975 + AO356_09780 0.61 -0.2

Or see this region's nucleotide sequence