Experiment: 1-ethyl-3-methylimidazolium acetate 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_09770 and AO356_09775 are separated by 214 nucleotides AO356_09775 and AO356_09780 are separated by 32 nucleotides
AO356_09770: AO356_09770 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, at 2,214,099 to 2,215,628
_09770
AO356_09775: AO356_09775 - peptidase M23, at 2,215,843 to 2,217,135
_09775
AO356_09780: AO356_09780 - peptidase S41, at 2,217,168 to 2,218,484
_09780
Position (kb)
2215
2216
2217
2218 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2215.665 kb on - strand at 2215.758 kb on + strand at 2215.759 kb on - strand at 2215.806 kb on + strand at 2215.806 kb on + strand at 2215.806 kb on + strand at 2215.806 kb on + strand at 2215.806 kb on + strand at 2215.806 kb on + strand at 2215.807 kb on - strand at 2215.807 kb on - strand at 2215.807 kb on - strand at 2215.807 kb on - strand at 2215.807 kb on - strand at 2215.807 kb on - strand at 2215.807 kb on - strand at 2215.809 kb on + strand at 2215.809 kb on + strand at 2215.809 kb on + strand at 2215.809 kb on + strand at 2215.809 kb on + strand at 2215.809 kb on + strand at 2215.810 kb on - strand at 2215.810 kb on - strand at 2215.810 kb on - strand at 2215.810 kb on - strand at 2215.842 kb on + strand at 2215.842 kb on + strand at 2215.843 kb on - strand at 2215.843 kb on - strand at 2215.860 kb on - strand at 2216.203 kb on + strand, within AO356_09775 at 2216.203 kb on + strand, within AO356_09775 at 2216.204 kb on - strand, within AO356_09775 at 2216.251 kb on - strand, within AO356_09775 at 2216.260 kb on + strand, within AO356_09775 at 2216.260 kb on + strand, within AO356_09775 at 2216.260 kb on + strand, within AO356_09775 at 2216.260 kb on + strand, within AO356_09775 at 2216.260 kb on + strand, within AO356_09775 at 2216.260 kb on + strand, within AO356_09775 at 2216.260 kb on + strand, within AO356_09775 at 2216.260 kb on + strand, within AO356_09775 at 2216.260 kb on + strand, within AO356_09775 at 2216.260 kb on + strand, within AO356_09775 at 2216.260 kb on + strand, within AO356_09775 at 2216.260 kb on + strand, within AO356_09775 at 2216.261 kb on - strand, within AO356_09775 at 2216.261 kb on - strand, within AO356_09775 at 2216.261 kb on - strand, within AO356_09775 at 2216.261 kb on - strand, within AO356_09775 at 2216.261 kb on - strand, within AO356_09775 at 2216.261 kb on - strand, within AO356_09775 at 2216.263 kb on + strand, within AO356_09775 at 2216.263 kb on + strand, within AO356_09775 at 2216.263 kb on + strand, within AO356_09775 at 2216.263 kb on + strand, within AO356_09775 at 2216.263 kb on + strand, within AO356_09775 at 2216.264 kb on - strand, within AO356_09775 at 2216.264 kb on - strand, within AO356_09775 at 2216.264 kb on - strand, within AO356_09775 at 2216.264 kb on - strand, within AO356_09775 at 2216.269 kb on + strand, within AO356_09775 at 2216.269 kb on + strand, within AO356_09775 at 2216.269 kb on + strand, within AO356_09775 at 2216.269 kb on + strand, within AO356_09775 at 2216.867 kb on + strand, within AO356_09775 at 2216.867 kb on + strand, within AO356_09775 at 2216.867 kb on + strand, within AO356_09775 at 2216.868 kb on - strand, within AO356_09775 at 2216.868 kb on - strand, within AO356_09775 at 2216.868 kb on - strand, within AO356_09775 at 2216.868 kb on - strand, within AO356_09775 at 2216.953 kb on + strand, within AO356_09775 at 2216.954 kb on - strand, within AO356_09775 at 2216.954 kb on - strand, within AO356_09775 at 2216.954 kb on - strand, within AO356_09775 at 2217.070 kb on + strand at 2217.071 kb on - strand at 2217.071 kb on - strand at 2217.134 kb on - strand at 2217.148 kb on + strand at 2217.148 kb on + strand at 2217.148 kb on + strand at 2217.148 kb on + strand at 2217.148 kb on + strand at 2217.148 kb on + strand at 2217.148 kb on + strand at 2217.148 kb on + strand at 2217.149 kb on - strand at 2217.149 kb on - strand at 2217.149 kb on - strand at 2217.149 kb on - strand at 2217.149 kb on - strand at 2217.149 kb on - strand at 2217.149 kb on - strand at 2217.151 kb on + strand at 2217.152 kb on - strand at 2217.188 kb on + strand at 2217.188 kb on + strand at 2217.188 kb on + strand at 2217.436 kb on - strand, within AO356_09780 at 2217.784 kb on - strand, within AO356_09780 at 2217.789 kb on + strand, within AO356_09780 at 2217.790 kb on - strand, within AO356_09780 at 2217.790 kb on - strand, within AO356_09780 at 2217.790 kb on - strand, within AO356_09780 at 2217.903 kb on - strand, within AO356_09780 at 2217.919 kb on + strand, within AO356_09780 at 2217.920 kb on - strand, within AO356_09780 at 2217.975 kb on + strand, within AO356_09780
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 10 mM remove 2,215,665 - -0.3 2,215,758 + -0.5 2,215,759 - +0.7 2,215,806 + +1.2 2,215,806 + +0.8 2,215,806 + +1.1 2,215,806 + +1.8 2,215,806 + +0.1 2,215,806 + +0.4 2,215,807 - +1.6 2,215,807 - +0.5 2,215,807 - -0.4 2,215,807 - -1.6 2,215,807 - -0.9 2,215,807 - +0.0 2,215,807 - -1.1 2,215,809 + -0.8 2,215,809 + +0.2 2,215,809 + +0.5 2,215,809 + +1.6 2,215,809 + +0.8 2,215,809 + -1.8 2,215,810 - -0.5 2,215,810 - -2.0 2,215,810 - -0.4 2,215,810 - -1.0 2,215,842 + -0.8 2,215,842 + -0.9 2,215,843 - -1.7 2,215,843 - +1.1 2,215,860 - -0.5 2,216,203 + AO356_09775 0.28 -2.1 2,216,203 + AO356_09775 0.28 -0.6 2,216,204 - AO356_09775 0.28 -0.8 2,216,251 - AO356_09775 0.32 -1.1 2,216,260 + AO356_09775 0.32 -0.3 2,216,260 + AO356_09775 0.32 -0.7 2,216,260 + AO356_09775 0.32 -0.8 2,216,260 + AO356_09775 0.32 -0.5 2,216,260 + AO356_09775 0.32 -0.1 2,216,260 + AO356_09775 0.32 -0.4 2,216,260 + AO356_09775 0.32 -2.4 2,216,260 + AO356_09775 0.32 -0.8 2,216,260 + AO356_09775 0.32 -1.0 2,216,260 + AO356_09775 0.32 -0.8 2,216,260 + AO356_09775 0.32 -2.9 2,216,260 + AO356_09775 0.32 +0.1 2,216,261 - AO356_09775 0.32 -1.4 2,216,261 - AO356_09775 0.32 +0.2 2,216,261 - AO356_09775 0.32 -2.6 2,216,261 - AO356_09775 0.32 -0.5 2,216,261 - AO356_09775 0.32 -0.6 2,216,261 - AO356_09775 0.32 +0.2 2,216,263 + AO356_09775 0.32 -1.5 2,216,263 + AO356_09775 0.32 -2.3 2,216,263 + AO356_09775 0.32 -0.8 2,216,263 + AO356_09775 0.32 -1.3 2,216,263 + AO356_09775 0.32 -2.4 2,216,264 - AO356_09775 0.33 -0.0 2,216,264 - AO356_09775 0.33 -1.4 2,216,264 - AO356_09775 0.33 +3.5 2,216,264 - AO356_09775 0.33 -0.2 2,216,269 + AO356_09775 0.33 -1.1 2,216,269 + AO356_09775 0.33 -0.3 2,216,269 + AO356_09775 0.33 -0.7 2,216,269 + AO356_09775 0.33 -1.0 2,216,867 + AO356_09775 0.79 -1.1 2,216,867 + AO356_09775 0.79 -0.2 2,216,867 + AO356_09775 0.79 -0.7 2,216,868 - AO356_09775 0.79 +0.7 2,216,868 - AO356_09775 0.79 +0.2 2,216,868 - AO356_09775 0.79 +1.1 2,216,868 - AO356_09775 0.79 +0.3 2,216,953 + AO356_09775 0.86 -0.8 2,216,954 - AO356_09775 0.86 -1.8 2,216,954 - AO356_09775 0.86 +0.4 2,216,954 - AO356_09775 0.86 -1.7 2,217,070 + -2.2 2,217,071 - +0.6 2,217,071 - +0.7 2,217,134 - -0.7 2,217,148 + +0.2 2,217,148 + +0.2 2,217,148 + -0.2 2,217,148 + +0.2 2,217,148 + +0.2 2,217,148 + -0.6 2,217,148 + -0.1 2,217,148 + -0.4 2,217,149 - +1.0 2,217,149 - -0.2 2,217,149 - -0.5 2,217,149 - +0.5 2,217,149 - +0.6 2,217,149 - -0.9 2,217,149 - +0.2 2,217,151 + -0.4 2,217,152 - -0.6 2,217,188 + +0.2 2,217,188 + +0.4 2,217,188 + -0.9 2,217,436 - AO356_09780 0.20 -0.4 2,217,784 - AO356_09780 0.47 -0.2 2,217,789 + AO356_09780 0.47 +0.3 2,217,790 - AO356_09780 0.47 -0.4 2,217,790 - AO356_09780 0.47 +0.1 2,217,790 - AO356_09780 0.47 -1.5 2,217,903 - AO356_09780 0.56 -2.4 2,217,919 + AO356_09780 0.57 -0.5 2,217,920 - AO356_09780 0.57 +1.0 2,217,975 + AO356_09780 0.61 -0.2
Or see this region's nucleotide sequence