Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_07050

Experiment: 1-ethyl-3-methylimidazolium acetate 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_07035 and AO356_07040 are separated by 76 nucleotidesAO356_07040 and AO356_07045 are separated by 12 nucleotidesAO356_07045 and AO356_07050 are separated by 2 nucleotidesAO356_07050 and AO356_07055 are separated by 15 nucleotidesAO356_07055 and AO356_07060 are separated by 197 nucleotides AO356_07035: AO356_07035 - RNA polymerase sigma-54 factor, at 1,552,210 to 1,553,703 _07035 AO356_07040: AO356_07040 - hypothetical protein, at 1,553,780 to 1,554,088 _07040 AO356_07045: AO356_07045 - PTS fructose transporter subunit IIA, at 1,554,101 to 1,554,565 _07045 AO356_07050: AO356_07050 - glmZ(sRNA)-inactivating NTPase, at 1,554,568 to 1,555,425 _07050 AO356_07055: AO356_07055 - phosphocarrier protein HPr, at 1,555,441 to 1,555,716 _07055 AO356_07060: AO356_07060 - divalent cation transporter, at 1,555,914 to 1,556,804 _07060 Position (kb) 1554 1555 1556Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1553.650 kb on + strandat 1553.701 kb on + strandat 1553.701 kb on + strandat 1553.701 kb on + strandat 1553.752 kb on + strandat 1553.779 kb on + strandat 1553.779 kb on + strandat 1553.779 kb on + strandat 1553.779 kb on + strandat 1553.779 kb on + strandat 1553.779 kb on + strandat 1553.779 kb on + strandat 1553.779 kb on + strandat 1553.834 kb on + strand, within AO356_07040at 1553.834 kb on + strand, within AO356_07040at 1553.834 kb on + strand, within AO356_07040at 1553.990 kb on + strand, within AO356_07040at 1553.990 kb on + strand, within AO356_07040at 1553.990 kb on + strand, within AO356_07040at 1553.990 kb on + strand, within AO356_07040at 1553.990 kb on + strand, within AO356_07040at 1553.990 kb on + strand, within AO356_07040at 1553.990 kb on + strand, within AO356_07040at 1553.990 kb on + strand, within AO356_07040at 1553.990 kb on + strand, within AO356_07040at 1553.990 kb on + strand, within AO356_07040at 1553.990 kb on + strand, within AO356_07040at 1553.990 kb on + strand, within AO356_07040at 1553.990 kb on + strand, within AO356_07040at 1553.990 kb on + strand, within AO356_07040at 1553.990 kb on + strand, within AO356_07040at 1553.990 kb on + strand, within AO356_07040at 1553.990 kb on + strand, within AO356_07040at 1553.990 kb on + strand, within AO356_07040at 1553.990 kb on + strand, within AO356_07040at 1554.606 kb on + strandat 1554.607 kb on - strandat 1554.646 kb on + strandat 1554.646 kb on + strandat 1554.647 kb on - strandat 1554.647 kb on - strandat 1554.647 kb on - strandat 1554.813 kb on + strand, within AO356_07050at 1554.814 kb on - strand, within AO356_07050at 1554.833 kb on - strand, within AO356_07050at 1554.833 kb on - strand, within AO356_07050at 1555.006 kb on + strand, within AO356_07050at 1555.006 kb on + strand, within AO356_07050at 1555.007 kb on - strand, within AO356_07050at 1555.106 kb on + strand, within AO356_07050at 1555.204 kb on + strand, within AO356_07050at 1555.238 kb on - strand, within AO356_07050at 1555.255 kb on + strand, within AO356_07050at 1555.255 kb on + strand, within AO356_07050at 1555.256 kb on - strand, within AO356_07050at 1555.256 kb on - strand, within AO356_07050at 1555.300 kb on + strand, within AO356_07050at 1555.300 kb on + strand, within AO356_07050at 1555.301 kb on - strand, within AO356_07050at 1555.301 kb on - strand, within AO356_07050at 1555.301 kb on - strand, within AO356_07050at 1555.324 kb on - strand, within AO356_07050at 1555.348 kb on + strandat 1555.349 kb on - strandat 1555.349 kb on - strandat 1555.349 kb on - strandat 1555.349 kb on - strandat 1555.349 kb on - strandat 1555.424 kb on - strandat 1555.424 kb on - strandat 1555.424 kb on - strandat 1555.679 kb on + strand, within AO356_07055at 1555.679 kb on + strand, within AO356_07055at 1555.680 kb on - strand, within AO356_07055at 1555.696 kb on + strandat 1555.866 kb on + strandat 1555.866 kb on + strandat 1555.866 kb on + strandat 1555.867 kb on - strandat 1555.869 kb on + strandat 1555.869 kb on + strandat 1555.869 kb on + strandat 1555.869 kb on + strandat 1555.870 kb on - strandat 1555.870 kb on - strandat 1556.419 kb on + strand, within AO356_07060at 1556.419 kb on + strand, within AO356_07060at 1556.420 kb on - strand, within AO356_07060at 1556.420 kb on - strand, within AO356_07060at 1556.420 kb on - strand, within AO356_07060

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 10 mM
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1,553,650 + -1.5
1,553,701 + +0.1
1,553,701 + -0.6
1,553,701 + +0.8
1,553,752 + +0.0
1,553,779 + -0.1
1,553,779 + -0.5
1,553,779 + +0.2
1,553,779 + +0.3
1,553,779 + +1.6
1,553,779 + -1.2
1,553,779 + -0.2
1,553,779 + +1.2
1,553,834 + AO356_07040 0.17 +0.8
1,553,834 + AO356_07040 0.17 -0.4
1,553,834 + AO356_07040 0.17 -0.4
1,553,990 + AO356_07040 0.68 -1.8
1,553,990 + AO356_07040 0.68 +0.0
1,553,990 + AO356_07040 0.68 -0.8
1,553,990 + AO356_07040 0.68 -1.1
1,553,990 + AO356_07040 0.68 -1.7
1,553,990 + AO356_07040 0.68 -0.6
1,553,990 + AO356_07040 0.68 +0.2
1,553,990 + AO356_07040 0.68 -0.6
1,553,990 + AO356_07040 0.68 +0.5
1,553,990 + AO356_07040 0.68 -0.8
1,553,990 + AO356_07040 0.68 -0.2
1,553,990 + AO356_07040 0.68 -0.0
1,553,990 + AO356_07040 0.68 -0.1
1,553,990 + AO356_07040 0.68 -0.4
1,553,990 + AO356_07040 0.68 +1.1
1,553,990 + AO356_07040 0.68 +1.5
1,553,990 + AO356_07040 0.68 -0.1
1,553,990 + AO356_07040 0.68 -0.3
1,553,990 + AO356_07040 0.68 -2.1
1,554,606 + +2.6
1,554,607 - -0.2
1,554,646 + -1.7
1,554,646 + -0.5
1,554,647 - -1.2
1,554,647 - +1.1
1,554,647 - -1.4
1,554,813 + AO356_07050 0.29 -0.5
1,554,814 - AO356_07050 0.29 -2.7
1,554,833 - AO356_07050 0.31 +0.3
1,554,833 - AO356_07050 0.31 -0.3
1,555,006 + AO356_07050 0.51 -2.0
1,555,006 + AO356_07050 0.51 -0.3
1,555,007 - AO356_07050 0.51 -2.8
1,555,106 + AO356_07050 0.63 -1.4
1,555,204 + AO356_07050 0.74 -3.0
1,555,238 - AO356_07050 0.78 -0.6
1,555,255 + AO356_07050 0.80 -2.3
1,555,255 + AO356_07050 0.80 -0.5
1,555,256 - AO356_07050 0.80 -0.5
1,555,256 - AO356_07050 0.80 -2.5
1,555,300 + AO356_07050 0.85 -4.2
1,555,300 + AO356_07050 0.85 -0.3
1,555,301 - AO356_07050 0.85 -0.1
1,555,301 - AO356_07050 0.85 -0.8
1,555,301 - AO356_07050 0.85 -1.0
1,555,324 - AO356_07050 0.88 -0.0
1,555,348 + -1.5
1,555,349 - -0.4
1,555,349 - +1.0
1,555,349 - -0.6
1,555,349 - +1.6
1,555,349 - -1.0
1,555,424 - +0.1
1,555,424 - +0.5
1,555,424 - +0.0
1,555,679 + AO356_07055 0.86 +1.3
1,555,679 + AO356_07055 0.86 +0.3
1,555,680 - AO356_07055 0.87 +1.0
1,555,696 + -0.5
1,555,866 + -1.3
1,555,866 + +0.4
1,555,866 + +0.4
1,555,867 - -0.2
1,555,869 + -0.9
1,555,869 + +1.1
1,555,869 + -2.0
1,555,869 + +0.9
1,555,870 - -0.0
1,555,870 - +0.8
1,556,419 + AO356_07060 0.57 -0.7
1,556,419 + AO356_07060 0.57 +0.8
1,556,420 - AO356_07060 0.57 +0.5
1,556,420 - AO356_07060 0.57 -0.2
1,556,420 - AO356_07060 0.57 +0.2

Or see this region's nucleotide sequence