Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_02405

Experiment: 1-ethyl-3-methylimidazolium acetate 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_02395 and AO356_02400 are separated by 160 nucleotidesAO356_02400 and AO356_02405 are separated by 96 nucleotidesAO356_02405 and AO356_02410 are separated by 10 nucleotidesAO356_02410 and AO356_02415 are separated by 5 nucleotidesAO356_02415 and AO356_02420 overlap by 4 nucleotides AO356_02395: AO356_02395 - chemotaxis protein, at 522,482 to 524,047 _02395 AO356_02400: AO356_02400 - alpha/beta hydrolase, at 524,208 to 524,900 _02400 AO356_02405: AO356_02405 - cytochrome C oxidase Cbb3, at 524,997 to 526,421 _02405 AO356_02410: AO356_02410 - cytochrome C oxidase Cbb3, at 526,432 to 527,040 _02410 AO356_02415: AO356_02415 - cytochrome C oxidase, at 527,046 to 527,246 _02415 AO356_02420: AO356_02420 - cytochrome C oxidase Cbb3, at 527,243 to 528,196 _02420 Position (kb) 524 525 526 527Strain fitness (log2 ratio) -3 -2 -1 0 1at 524.019 kb on - strandat 524.206 kb on + strandat 524.207 kb on - strandat 524.467 kb on + strand, within AO356_02400at 524.467 kb on + strand, within AO356_02400at 524.467 kb on + strand, within AO356_02400at 524.467 kb on + strand, within AO356_02400at 524.468 kb on - strand, within AO356_02400at 524.468 kb on - strand, within AO356_02400at 524.468 kb on - strand, within AO356_02400at 524.468 kb on - strand, within AO356_02400at 524.468 kb on - strand, within AO356_02400at 524.468 kb on - strand, within AO356_02400at 524.578 kb on + strand, within AO356_02400at 524.578 kb on + strand, within AO356_02400at 524.578 kb on + strand, within AO356_02400at 524.579 kb on - strand, within AO356_02400at 524.597 kb on - strand, within AO356_02400at 524.597 kb on - strand, within AO356_02400at 524.597 kb on - strand, within AO356_02400at 524.597 kb on - strand, within AO356_02400at 524.677 kb on + strand, within AO356_02400at 524.677 kb on + strand, within AO356_02400at 524.677 kb on + strand, within AO356_02400at 524.677 kb on + strand, within AO356_02400at 524.678 kb on - strand, within AO356_02400at 524.678 kb on - strand, within AO356_02400at 524.924 kb on + strandat 524.924 kb on + strandat 524.925 kb on - strandat 524.925 kb on - strandat 524.925 kb on - strandat 524.926 kb on + strandat 524.927 kb on - strandat 525.008 kb on + strandat 525.008 kb on + strandat 525.008 kb on + strandat 525.008 kb on + strandat 525.008 kb on + strandat 525.009 kb on - strandat 525.009 kb on - strandat 525.014 kb on + strandat 525.015 kb on - strandat 525.021 kb on + strandat 525.021 kb on + strandat 525.022 kb on - strandat 525.027 kb on + strandat 525.027 kb on + strandat 525.027 kb on + strandat 525.028 kb on - strandat 525.028 kb on - strandat 525.028 kb on - strandat 525.053 kb on + strandat 525.054 kb on - strandat 525.054 kb on - strandat 525.232 kb on - strand, within AO356_02405at 525.345 kb on + strand, within AO356_02405at 525.346 kb on - strand, within AO356_02405at 525.363 kb on + strand, within AO356_02405at 525.363 kb on + strand, within AO356_02405at 525.364 kb on - strand, within AO356_02405at 525.386 kb on - strand, within AO356_02405at 525.468 kb on + strand, within AO356_02405at 525.468 kb on + strand, within AO356_02405at 525.468 kb on + strand, within AO356_02405at 525.468 kb on + strand, within AO356_02405at 525.468 kb on + strand, within AO356_02405at 525.468 kb on + strand, within AO356_02405at 525.469 kb on - strand, within AO356_02405at 525.469 kb on - strand, within AO356_02405at 525.469 kb on - strand, within AO356_02405at 525.564 kb on + strand, within AO356_02405at 525.564 kb on + strand, within AO356_02405at 525.565 kb on - strand, within AO356_02405at 525.573 kb on + strand, within AO356_02405at 525.573 kb on + strand, within AO356_02405at 525.574 kb on - strand, within AO356_02405at 525.574 kb on - strand, within AO356_02405at 525.663 kb on + strand, within AO356_02405at 525.663 kb on + strand, within AO356_02405at 525.664 kb on - strand, within AO356_02405at 525.664 kb on - strand, within AO356_02405at 525.664 kb on - strand, within AO356_02405at 525.664 kb on - strand, within AO356_02405at 525.664 kb on - strand, within AO356_02405at 525.664 kb on - strand, within AO356_02405at 525.664 kb on - strand, within AO356_02405at 525.666 kb on + strand, within AO356_02405at 525.666 kb on + strand, within AO356_02405at 525.666 kb on + strand, within AO356_02405at 525.667 kb on - strand, within AO356_02405at 525.747 kb on + strand, within AO356_02405at 525.747 kb on + strand, within AO356_02405at 525.777 kb on + strand, within AO356_02405at 525.893 kb on + strand, within AO356_02405at 525.893 kb on + strand, within AO356_02405at 525.945 kb on + strand, within AO356_02405at 525.945 kb on + strand, within AO356_02405at 525.946 kb on - strand, within AO356_02405at 525.946 kb on - strand, within AO356_02405at 526.034 kb on - strand, within AO356_02405at 526.034 kb on - strand, within AO356_02405at 526.034 kb on - strand, within AO356_02405at 526.084 kb on - strand, within AO356_02405at 526.179 kb on + strand, within AO356_02405at 526.179 kb on + strand, within AO356_02405at 526.179 kb on + strand, within AO356_02405at 526.179 kb on + strand, within AO356_02405at 526.180 kb on - strand, within AO356_02405at 526.180 kb on - strand, within AO356_02405at 526.180 kb on - strand, within AO356_02405at 526.258 kb on - strand, within AO356_02405at 526.354 kb on - strandat 526.380 kb on + strandat 526.574 kb on - strand, within AO356_02410at 526.607 kb on - strand, within AO356_02410at 526.607 kb on - strand, within AO356_02410at 526.607 kb on - strand, within AO356_02410at 526.607 kb on - strand, within AO356_02410at 526.607 kb on - strand, within AO356_02410at 526.607 kb on - strand, within AO356_02410at 526.804 kb on + strand, within AO356_02410at 526.805 kb on - strand, within AO356_02410at 526.927 kb on + strand, within AO356_02410at 526.927 kb on + strand, within AO356_02410at 527.000 kb on - strandat 527.261 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 10 mM
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524,019 - +0.5
524,206 + -0.3
524,207 - +1.0
524,467 + AO356_02400 0.37 +0.2
524,467 + AO356_02400 0.37 +0.0
524,467 + AO356_02400 0.37 -0.5
524,467 + AO356_02400 0.37 -0.1
524,468 - AO356_02400 0.38 -0.7
524,468 - AO356_02400 0.38 -0.1
524,468 - AO356_02400 0.38 -0.0
524,468 - AO356_02400 0.38 +0.9
524,468 - AO356_02400 0.38 -0.5
524,468 - AO356_02400 0.38 +0.5
524,578 + AO356_02400 0.53 +0.2
524,578 + AO356_02400 0.53 -0.2
524,578 + AO356_02400 0.53 -0.2
524,579 - AO356_02400 0.54 +0.4
524,597 - AO356_02400 0.56 -1.0
524,597 - AO356_02400 0.56 +1.2
524,597 - AO356_02400 0.56 -0.6
524,597 - AO356_02400 0.56 -0.9
524,677 + AO356_02400 0.68 +0.4
524,677 + AO356_02400 0.68 +0.1
524,677 + AO356_02400 0.68 +0.3
524,677 + AO356_02400 0.68 +0.6
524,678 - AO356_02400 0.68 -0.2
524,678 - AO356_02400 0.68 -1.6
524,924 + -1.5
524,924 + +1.7
524,925 - -1.8
524,925 - -1.1
524,925 - -0.7
524,926 + -0.4
524,927 - -0.4
525,008 + -1.2
525,008 + -2.2
525,008 + -0.9
525,008 + -2.2
525,008 + -0.6
525,009 - -0.2
525,009 - -1.0
525,014 + -1.2
525,015 - +0.3
525,021 + +1.2
525,021 + +1.1
525,022 - -2.0
525,027 + -1.0
525,027 + -0.9
525,027 + -1.2
525,028 - -1.3
525,028 - -0.1
525,028 - -1.7
525,053 + -0.6
525,054 - -1.2
525,054 - -0.9
525,232 - AO356_02405 0.16 -1.2
525,345 + AO356_02405 0.24 +0.8
525,346 - AO356_02405 0.24 -0.3
525,363 + AO356_02405 0.26 -0.2
525,363 + AO356_02405 0.26 -0.9
525,364 - AO356_02405 0.26 -1.1
525,386 - AO356_02405 0.27 -0.8
525,468 + AO356_02405 0.33 -0.8
525,468 + AO356_02405 0.33 -0.5
525,468 + AO356_02405 0.33 +0.9
525,468 + AO356_02405 0.33 -1.4
525,468 + AO356_02405 0.33 +0.1
525,468 + AO356_02405 0.33 -0.6
525,469 - AO356_02405 0.33 -3.3
525,469 - AO356_02405 0.33 -0.5
525,469 - AO356_02405 0.33 -1.3
525,564 + AO356_02405 0.40 -0.3
525,564 + AO356_02405 0.40 -0.3
525,565 - AO356_02405 0.40 -0.5
525,573 + AO356_02405 0.40 -0.1
525,573 + AO356_02405 0.40 -0.7
525,574 - AO356_02405 0.40 +0.2
525,574 - AO356_02405 0.40 +0.2
525,663 + AO356_02405 0.47 -1.3
525,663 + AO356_02405 0.47 -2.3
525,664 - AO356_02405 0.47 -2.3
525,664 - AO356_02405 0.47 -0.6
525,664 - AO356_02405 0.47 +0.1
525,664 - AO356_02405 0.47 -2.2
525,664 - AO356_02405 0.47 -1.0
525,664 - AO356_02405 0.47 +0.3
525,664 - AO356_02405 0.47 -0.3
525,666 + AO356_02405 0.47 -1.3
525,666 + AO356_02405 0.47 -2.0
525,666 + AO356_02405 0.47 -0.8
525,667 - AO356_02405 0.47 -1.1
525,747 + AO356_02405 0.53 -0.7
525,747 + AO356_02405 0.53 -1.1
525,777 + AO356_02405 0.55 -0.1
525,893 + AO356_02405 0.63 -0.8
525,893 + AO356_02405 0.63 -0.4
525,945 + AO356_02405 0.67 -0.6
525,945 + AO356_02405 0.67 -2.0
525,946 - AO356_02405 0.67 +0.0
525,946 - AO356_02405 0.67 -0.7
526,034 - AO356_02405 0.73 +0.1
526,034 - AO356_02405 0.73 -0.5
526,034 - AO356_02405 0.73 -0.1
526,084 - AO356_02405 0.76 -0.1
526,179 + AO356_02405 0.83 -0.1
526,179 + AO356_02405 0.83 -0.8
526,179 + AO356_02405 0.83 -1.8
526,179 + AO356_02405 0.83 +1.0
526,180 - AO356_02405 0.83 -1.3
526,180 - AO356_02405 0.83 -0.7
526,180 - AO356_02405 0.83 -0.7
526,258 - AO356_02405 0.88 -1.3
526,354 - -1.0
526,380 + -0.7
526,574 - AO356_02410 0.23 -0.2
526,607 - AO356_02410 0.29 -1.1
526,607 - AO356_02410 0.29 -1.3
526,607 - AO356_02410 0.29 -0.4
526,607 - AO356_02410 0.29 -0.3
526,607 - AO356_02410 0.29 -0.4
526,607 - AO356_02410 0.29 -0.7
526,804 + AO356_02410 0.61 -0.5
526,805 - AO356_02410 0.61 +0.4
526,927 + AO356_02410 0.81 +0.6
526,927 + AO356_02410 0.81 -0.2
527,000 - -0.2
527,261 - -0.3

Or see this region's nucleotide sequence