Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_00840

Experiment: 1-ethyl-3-methylimidazolium acetate 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_00835 and AO356_00840 overlap by 1 nucleotidesAO356_00840 and AO356_00845 are separated by 0 nucleotidesAO356_00845 and AO356_00850 are separated by 9 nucleotides AO356_00835: AO356_00835 - hypothetical protein, at 190,700 to 191,749 _00835 AO356_00840: AO356_00840 - hypothetical protein, at 191,749 to 193,281 _00840 AO356_00845: AO356_00845 - hypothetical protein, at 193,282 to 194,094 _00845 AO356_00850: AO356_00850 - hypothetical protein, at 194,104 to 195,543 _00850 Position (kb) 191 192 193 194Strain fitness (log2 ratio) -2 -1 0 1 2at 190.800 kb on + strandat 190.801 kb on - strandat 190.801 kb on - strandat 190.801 kb on - strandat 190.801 kb on - strandat 190.803 kb on + strandat 190.804 kb on - strandat 190.807 kb on + strand, within AO356_00835at 190.808 kb on - strand, within AO356_00835at 190.808 kb on - strand, within AO356_00835at 190.808 kb on - strand, within AO356_00835at 190.867 kb on - strand, within AO356_00835at 190.867 kb on - strand, within AO356_00835at 190.873 kb on + strand, within AO356_00835at 190.879 kb on + strand, within AO356_00835at 190.879 kb on + strand, within AO356_00835at 190.963 kb on + strand, within AO356_00835at 190.964 kb on - strand, within AO356_00835at 190.977 kb on + strand, within AO356_00835at 190.977 kb on + strand, within AO356_00835at 191.115 kb on - strand, within AO356_00835at 191.115 kb on - strand, within AO356_00835at 191.115 kb on - strand, within AO356_00835at 191.115 kb on - strand, within AO356_00835at 191.176 kb on + strand, within AO356_00835at 191.176 kb on + strand, within AO356_00835at 191.177 kb on - strand, within AO356_00835at 191.224 kb on + strand, within AO356_00835at 191.225 kb on - strand, within AO356_00835at 191.225 kb on - strand, within AO356_00835at 191.281 kb on + strand, within AO356_00835at 191.325 kb on + strand, within AO356_00835at 191.325 kb on + strand, within AO356_00835at 191.325 kb on + strand, within AO356_00835at 191.325 kb on + strand, within AO356_00835at 191.326 kb on - strand, within AO356_00835at 191.326 kb on - strand, within AO356_00835at 191.326 kb on - strand, within AO356_00835at 191.326 kb on - strand, within AO356_00835at 191.345 kb on + strand, within AO356_00835at 191.377 kb on + strand, within AO356_00835at 191.450 kb on + strand, within AO356_00835at 191.450 kb on + strand, within AO356_00835at 191.507 kb on - strand, within AO356_00835at 191.546 kb on - strand, within AO356_00835at 191.546 kb on - strand, within AO356_00835at 191.546 kb on - strand, within AO356_00835at 191.604 kb on + strand, within AO356_00835at 191.632 kb on + strand, within AO356_00835at 191.676 kb on - strandat 191.710 kb on + strandat 191.914 kb on + strand, within AO356_00840at 191.914 kb on + strand, within AO356_00840at 191.914 kb on + strand, within AO356_00840at 191.914 kb on + strand, within AO356_00840at 191.914 kb on + strand, within AO356_00840at 191.915 kb on - strand, within AO356_00840at 191.915 kb on - strand, within AO356_00840at 191.915 kb on - strand, within AO356_00840at 191.915 kb on - strand, within AO356_00840at 191.915 kb on - strand, within AO356_00840at 191.915 kb on - strand, within AO356_00840at 191.916 kb on + strand, within AO356_00840at 191.917 kb on - strand, within AO356_00840at 191.917 kb on - strand, within AO356_00840at 192.089 kb on - strand, within AO356_00840at 192.089 kb on - strand, within AO356_00840at 192.204 kb on - strand, within AO356_00840at 192.204 kb on - strand, within AO356_00840at 192.211 kb on + strand, within AO356_00840at 192.212 kb on - strand, within AO356_00840at 192.212 kb on - strand, within AO356_00840at 192.257 kb on - strand, within AO356_00840at 192.279 kb on + strand, within AO356_00840at 192.280 kb on - strand, within AO356_00840at 192.312 kb on + strand, within AO356_00840at 192.312 kb on + strand, within AO356_00840at 192.312 kb on + strand, within AO356_00840at 192.313 kb on - strand, within AO356_00840at 192.313 kb on - strand, within AO356_00840at 192.313 kb on - strand, within AO356_00840at 192.390 kb on + strand, within AO356_00840at 192.390 kb on + strand, within AO356_00840at 192.402 kb on + strand, within AO356_00840at 192.403 kb on - strand, within AO356_00840at 192.403 kb on - strand, within AO356_00840at 192.403 kb on - strand, within AO356_00840at 192.403 kb on - strand, within AO356_00840at 192.403 kb on - strand, within AO356_00840at 192.403 kb on - strand, within AO356_00840at 192.568 kb on - strand, within AO356_00840at 192.673 kb on - strand, within AO356_00840at 192.673 kb on - strand, within AO356_00840at 192.698 kb on + strand, within AO356_00840at 192.698 kb on + strand, within AO356_00840at 192.698 kb on + strand, within AO356_00840at 192.699 kb on - strand, within AO356_00840at 192.699 kb on - strand, within AO356_00840at 192.699 kb on - strand, within AO356_00840at 193.062 kb on - strand, within AO356_00840at 193.089 kb on + strand, within AO356_00840at 193.089 kb on + strand, within AO356_00840at 193.089 kb on + strand, within AO356_00840at 193.090 kb on - strand, within AO356_00840at 193.090 kb on - strand, within AO356_00840at 193.103 kb on + strand, within AO356_00840at 193.136 kb on + strandat 193.136 kb on + strandat 193.179 kb on + strandat 193.180 kb on - strandat 193.180 kb on - strandat 193.180 kb on - strandat 193.193 kb on + strandat 193.193 kb on + strandat 193.193 kb on + strandat 193.193 kb on + strandat 193.193 kb on + strandat 193.194 kb on - strandat 193.194 kb on - strandat 193.194 kb on - strandat 193.194 kb on - strandat 193.247 kb on + strandat 193.248 kb on - strandat 193.252 kb on + strandat 193.253 kb on - strandat 193.270 kb on + strandat 193.270 kb on + strandat 193.271 kb on - strandat 193.283 kb on + strandat 193.284 kb on - strandat 193.284 kb on - strandat 193.304 kb on - strandat 193.304 kb on - strandat 193.338 kb on - strandat 193.368 kb on - strand, within AO356_00845at 193.368 kb on - strand, within AO356_00845at 193.398 kb on + strand, within AO356_00845at 193.398 kb on + strand, within AO356_00845at 193.399 kb on - strand, within AO356_00845at 193.451 kb on + strand, within AO356_00845at 193.536 kb on - strand, within AO356_00845at 193.536 kb on - strand, within AO356_00845at 193.595 kb on - strand, within AO356_00845at 193.655 kb on - strand, within AO356_00845at 193.655 kb on - strand, within AO356_00845at 193.761 kb on + strand, within AO356_00845at 193.768 kb on + strand, within AO356_00845at 193.791 kb on - strand, within AO356_00845at 193.824 kb on + strand, within AO356_00845at 193.905 kb on + strand, within AO356_00845at 193.906 kb on - strand, within AO356_00845at 193.906 kb on - strand, within AO356_00845at 193.925 kb on + strand, within AO356_00845at 193.925 kb on + strand, within AO356_00845at 193.925 kb on + strand, within AO356_00845at 193.925 kb on + strand, within AO356_00845at 193.926 kb on - strand, within AO356_00845at 193.926 kb on - strand, within AO356_00845at 193.926 kb on - strand, within AO356_00845at 193.926 kb on - strand, within AO356_00845at 193.960 kb on + strand, within AO356_00845at 193.960 kb on + strand, within AO356_00845at 193.961 kb on - strand, within AO356_00845at 193.961 kb on - strand, within AO356_00845at 193.975 kb on - strand, within AO356_00845at 193.995 kb on - strand, within AO356_00845at 194.084 kb on + strandat 194.084 kb on + strandat 194.105 kb on + strandat 194.106 kb on - strandat 194.106 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 10 mM
remove
190,800 + +0.7
190,801 - +0.3
190,801 - -1.9
190,801 - -1.2
190,801 - -0.8
190,803 + +0.6
190,804 - +1.3
190,807 + AO356_00835 0.10 +0.9
190,808 - AO356_00835 0.10 +0.7
190,808 - AO356_00835 0.10 -0.5
190,808 - AO356_00835 0.10 -1.1
190,867 - AO356_00835 0.16 +1.5
190,867 - AO356_00835 0.16 +0.4
190,873 + AO356_00835 0.16 +0.1
190,879 + AO356_00835 0.17 -0.5
190,879 + AO356_00835 0.17 +1.0
190,963 + AO356_00835 0.25 -1.1
190,964 - AO356_00835 0.25 -0.5
190,977 + AO356_00835 0.26 +0.1
190,977 + AO356_00835 0.26 +2.0
191,115 - AO356_00835 0.40 +0.3
191,115 - AO356_00835 0.40 +0.0
191,115 - AO356_00835 0.40 -0.0
191,115 - AO356_00835 0.40 +0.7
191,176 + AO356_00835 0.45 -0.2
191,176 + AO356_00835 0.45 -1.1
191,177 - AO356_00835 0.45 -0.4
191,224 + AO356_00835 0.50 +0.1
191,225 - AO356_00835 0.50 -0.4
191,225 - AO356_00835 0.50 +1.1
191,281 + AO356_00835 0.55 +0.9
191,325 + AO356_00835 0.60 +0.1
191,325 + AO356_00835 0.60 -1.3
191,325 + AO356_00835 0.60 +0.5
191,325 + AO356_00835 0.60 -1.6
191,326 - AO356_00835 0.60 -1.3
191,326 - AO356_00835 0.60 +0.2
191,326 - AO356_00835 0.60 -1.9
191,326 - AO356_00835 0.60 -1.7
191,345 + AO356_00835 0.61 -0.7
191,377 + AO356_00835 0.64 +0.9
191,450 + AO356_00835 0.71 +0.6
191,450 + AO356_00835 0.71 -0.9
191,507 - AO356_00835 0.77 +0.1
191,546 - AO356_00835 0.81 -0.3
191,546 - AO356_00835 0.81 -0.9
191,546 - AO356_00835 0.81 +0.2
191,604 + AO356_00835 0.86 +0.7
191,632 + AO356_00835 0.89 +1.0
191,676 - +0.5
191,710 + +0.9
191,914 + AO356_00840 0.11 -0.0
191,914 + AO356_00840 0.11 -0.1
191,914 + AO356_00840 0.11 +1.1
191,914 + AO356_00840 0.11 +0.6
191,914 + AO356_00840 0.11 +0.3
191,915 - AO356_00840 0.11 -0.3
191,915 - AO356_00840 0.11 +0.5
191,915 - AO356_00840 0.11 -1.3
191,915 - AO356_00840 0.11 +0.3
191,915 - AO356_00840 0.11 +0.3
191,915 - AO356_00840 0.11 -0.1
191,916 + AO356_00840 0.11 -0.9
191,917 - AO356_00840 0.11 -0.9
191,917 - AO356_00840 0.11 +0.2
192,089 - AO356_00840 0.22 +1.1
192,089 - AO356_00840 0.22 -0.4
192,204 - AO356_00840 0.30 +0.2
192,204 - AO356_00840 0.30 -1.6
192,211 + AO356_00840 0.30 +0.6
192,212 - AO356_00840 0.30 +0.4
192,212 - AO356_00840 0.30 +1.1
192,257 - AO356_00840 0.33 +0.9
192,279 + AO356_00840 0.35 +0.8
192,280 - AO356_00840 0.35 -0.6
192,312 + AO356_00840 0.37 -0.5
192,312 + AO356_00840 0.37 +0.6
192,312 + AO356_00840 0.37 +0.2
192,313 - AO356_00840 0.37 +1.6
192,313 - AO356_00840 0.37 -0.9
192,313 - AO356_00840 0.37 +0.2
192,390 + AO356_00840 0.42 +0.7
192,390 + AO356_00840 0.42 +0.8
192,402 + AO356_00840 0.43 -0.1
192,403 - AO356_00840 0.43 +0.9
192,403 - AO356_00840 0.43 -0.9
192,403 - AO356_00840 0.43 -2.4
192,403 - AO356_00840 0.43 -0.2
192,403 - AO356_00840 0.43 -0.1
192,403 - AO356_00840 0.43 +1.2
192,568 - AO356_00840 0.53 -0.5
192,673 - AO356_00840 0.60 +0.2
192,673 - AO356_00840 0.60 +0.3
192,698 + AO356_00840 0.62 -0.2
192,698 + AO356_00840 0.62 -0.1
192,698 + AO356_00840 0.62 +0.8
192,699 - AO356_00840 0.62 +0.6
192,699 - AO356_00840 0.62 -0.6
192,699 - AO356_00840 0.62 -0.1
193,062 - AO356_00840 0.86 +0.5
193,089 + AO356_00840 0.87 +1.2
193,089 + AO356_00840 0.87 -0.9
193,089 + AO356_00840 0.87 +0.1
193,090 - AO356_00840 0.87 +0.4
193,090 - AO356_00840 0.87 -0.5
193,103 + AO356_00840 0.88 -0.2
193,136 + +1.6
193,136 + +0.0
193,179 + +1.5
193,180 - +0.7
193,180 - -0.0
193,180 - -0.9
193,193 + +1.0
193,193 + -2.1
193,193 + -0.6
193,193 + -0.5
193,193 + -0.1
193,194 - -1.1
193,194 - -0.6
193,194 - -0.1
193,194 - -0.4
193,247 + -0.3
193,248 - +0.7
193,252 + -1.3
193,253 - -0.1
193,270 + +0.2
193,270 + +0.3
193,271 - +0.5
193,283 + +0.5
193,284 - +0.0
193,284 - +0.9
193,304 - -0.7
193,304 - -0.5
193,338 - +0.5
193,368 - AO356_00845 0.11 +0.5
193,368 - AO356_00845 0.11 +0.9
193,398 + AO356_00845 0.14 +0.3
193,398 + AO356_00845 0.14 -0.8
193,399 - AO356_00845 0.14 +0.8
193,451 + AO356_00845 0.21 +0.5
193,536 - AO356_00845 0.31 +0.4
193,536 - AO356_00845 0.31 +0.1
193,595 - AO356_00845 0.38 +0.9
193,655 - AO356_00845 0.46 +1.1
193,655 - AO356_00845 0.46 -1.1
193,761 + AO356_00845 0.59 +0.1
193,768 + AO356_00845 0.60 -0.6
193,791 - AO356_00845 0.63 +0.6
193,824 + AO356_00845 0.67 -0.7
193,905 + AO356_00845 0.77 -0.2
193,906 - AO356_00845 0.77 +0.9
193,906 - AO356_00845 0.77 +0.7
193,925 + AO356_00845 0.79 +0.7
193,925 + AO356_00845 0.79 -0.5
193,925 + AO356_00845 0.79 -0.4
193,925 + AO356_00845 0.79 -1.5
193,926 - AO356_00845 0.79 +0.1
193,926 - AO356_00845 0.79 -0.3
193,926 - AO356_00845 0.79 -0.0
193,926 - AO356_00845 0.79 -0.2
193,960 + AO356_00845 0.83 -0.5
193,960 + AO356_00845 0.83 -0.5
193,961 - AO356_00845 0.84 +0.4
193,961 - AO356_00845 0.84 +0.3
193,975 - AO356_00845 0.85 +1.2
193,995 - AO356_00845 0.88 -0.5
194,084 + -0.4
194,084 + +0.3
194,105 + -0.9
194,106 - -0.2
194,106 - -0.6

Or see this region's nucleotide sequence