Experiment: 1-ethyl-3-methylimidazolium acetate 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_00830 and AO356_00835 are separated by 420 nucleotides
AO356_00830: AO356_00830 - hypothetical protein, at 188,228 to 190,279
_00830
AO356_00835: AO356_00835 - hypothetical protein, at 190,700 to 191,749
_00835
Position (kb) 188
189
190
191 Strain fitness (log2 ratio) -2
-1
0
1
2 at 187.310 kb on + strand at 187.311 kb on - strand at 187.319 kb on + strand at 187.320 kb on - strand at 187.389 kb on - strand at 187.492 kb on + strand at 187.492 kb on + strand at 187.493 kb on - strand at 187.575 kb on + strand at 187.575 kb on + strand at 187.576 kb on - strand at 187.576 kb on - strand at 187.576 kb on - strand at 187.576 kb on - strand at 187.579 kb on + strand at 187.579 kb on + strand at 187.579 kb on + strand at 187.579 kb on + strand at 187.579 kb on + strand at 187.580 kb on - strand at 187.580 kb on - strand at 187.580 kb on - strand at 187.580 kb on - strand at 187.638 kb on + strand at 187.638 kb on + strand at 187.639 kb on - strand at 187.748 kb on - strand at 187.767 kb on + strand at 187.767 kb on + strand at 187.768 kb on - strand at 187.768 kb on - strand at 187.771 kb on + strand at 187.772 kb on - strand at 187.772 kb on - strand at 187.772 kb on - strand at 187.772 kb on - strand at 187.774 kb on + strand at 187.775 kb on - strand at 187.776 kb on + strand at 187.776 kb on + strand at 187.776 kb on + strand at 187.777 kb on - strand at 187.777 kb on - strand at 187.810 kb on + strand at 187.877 kb on - strand at 187.984 kb on + strand at 187.997 kb on - strand at 188.000 kb on - strand at 188.000 kb on - strand at 188.004 kb on + strand at 188.091 kb on - strand at 188.096 kb on + strand at 188.206 kb on + strand at 188.207 kb on - strand at 188.287 kb on + strand at 188.287 kb on + strand at 188.287 kb on + strand at 188.288 kb on - strand at 188.288 kb on - strand at 188.288 kb on - strand at 188.288 kb on - strand at 188.319 kb on + strand at 188.332 kb on + strand at 188.413 kb on + strand at 188.414 kb on - strand at 188.430 kb on + strand at 188.515 kb on - strand, within AO356_00830 at 188.588 kb on + strand, within AO356_00830 at 188.588 kb on + strand, within AO356_00830 at 188.589 kb on - strand, within AO356_00830 at 188.589 kb on - strand, within AO356_00830 at 188.589 kb on - strand, within AO356_00830 at 188.668 kb on + strand, within AO356_00830 at 188.668 kb on + strand, within AO356_00830 at 188.669 kb on - strand, within AO356_00830 at 188.722 kb on + strand, within AO356_00830 at 188.809 kb on + strand, within AO356_00830 at 188.853 kb on + strand, within AO356_00830 at 188.854 kb on - strand, within AO356_00830 at 188.922 kb on + strand, within AO356_00830 at 188.923 kb on - strand, within AO356_00830 at 188.923 kb on - strand, within AO356_00830 at 188.923 kb on - strand, within AO356_00830 at 188.931 kb on - strand, within AO356_00830 at 188.972 kb on + strand, within AO356_00830 at 188.973 kb on - strand, within AO356_00830 at 188.973 kb on - strand, within AO356_00830 at 188.973 kb on - strand, within AO356_00830 at 188.989 kb on - strand, within AO356_00830 at 189.097 kb on + strand, within AO356_00830 at 189.098 kb on - strand, within AO356_00830 at 189.380 kb on + strand, within AO356_00830 at 189.380 kb on + strand, within AO356_00830 at 189.380 kb on + strand, within AO356_00830 at 189.380 kb on + strand, within AO356_00830 at 189.380 kb on + strand, within AO356_00830 at 189.380 kb on + strand, within AO356_00830 at 189.381 kb on - strand, within AO356_00830 at 189.381 kb on - strand, within AO356_00830 at 189.381 kb on - strand, within AO356_00830 at 189.381 kb on - strand, within AO356_00830 at 189.381 kb on - strand, within AO356_00830 at 189.381 kb on - strand, within AO356_00830 at 189.384 kb on + strand, within AO356_00830 at 189.393 kb on + strand, within AO356_00830 at 189.393 kb on + strand, within AO356_00830 at 189.394 kb on - strand, within AO356_00830 at 189.394 kb on - strand, within AO356_00830 at 189.398 kb on - strand, within AO356_00830 at 189.529 kb on + strand, within AO356_00830 at 189.530 kb on - strand, within AO356_00830 at 189.530 kb on - strand, within AO356_00830 at 189.530 kb on - strand, within AO356_00830 at 189.721 kb on + strand, within AO356_00830 at 189.722 kb on - strand, within AO356_00830 at 189.722 kb on - strand, within AO356_00830 at 189.823 kb on + strand, within AO356_00830 at 189.823 kb on + strand, within AO356_00830 at 189.823 kb on + strand, within AO356_00830 at 189.824 kb on - strand, within AO356_00830 at 189.824 kb on - strand, within AO356_00830 at 189.824 kb on - strand, within AO356_00830 at 189.824 kb on - strand, within AO356_00830 at 189.824 kb on - strand, within AO356_00830 at 189.824 kb on - strand, within AO356_00830 at 189.828 kb on - strand, within AO356_00830 at 189.868 kb on + strand, within AO356_00830 at 189.888 kb on + strand, within AO356_00830 at 189.942 kb on - strand, within AO356_00830 at 189.969 kb on + strand, within AO356_00830 at 189.969 kb on + strand, within AO356_00830 at 189.970 kb on - strand, within AO356_00830 at 189.970 kb on - strand, within AO356_00830 at 190.051 kb on + strand, within AO356_00830 at 190.051 kb on + strand, within AO356_00830 at 190.051 kb on + strand, within AO356_00830 at 190.052 kb on - strand, within AO356_00830 at 190.052 kb on - strand, within AO356_00830 at 190.052 kb on - strand, within AO356_00830 at 190.084 kb on + strand at 190.085 kb on - strand at 190.088 kb on + strand at 190.088 kb on + strand at 190.088 kb on + strand at 190.088 kb on + strand at 190.088 kb on + strand at 190.088 kb on + strand at 190.088 kb on + strand at 190.089 kb on - strand at 190.089 kb on - strand at 190.089 kb on - strand at 190.089 kb on - strand at 190.089 kb on - strand at 190.089 kb on - strand at 190.243 kb on + strand at 190.244 kb on - strand at 190.263 kb on + strand at 190.263 kb on + strand at 190.264 kb on - strand at 190.264 kb on - strand at 190.271 kb on + strand at 190.271 kb on + strand at 190.309 kb on + strand at 190.310 kb on - strand at 190.337 kb on + strand at 190.337 kb on + strand at 190.337 kb on + strand at 190.337 kb on + strand at 190.338 kb on - strand at 190.355 kb on - strand at 190.424 kb on + strand at 190.425 kb on - strand at 190.440 kb on + strand at 190.440 kb on + strand at 190.460 kb on - strand at 190.460 kb on - strand at 190.556 kb on + strand at 190.556 kb on + strand at 190.556 kb on + strand at 190.557 kb on - strand at 190.557 kb on - strand at 190.557 kb on - strand at 190.557 kb on - strand at 190.587 kb on + strand at 190.587 kb on + strand at 190.588 kb on - strand at 190.617 kb on - strand at 190.739 kb on + strand at 190.740 kb on - strand at 190.740 kb on - strand at 190.800 kb on + strand at 190.801 kb on - strand at 190.801 kb on - strand at 190.801 kb on - strand at 190.801 kb on - strand at 190.803 kb on + strand at 190.804 kb on - strand at 190.807 kb on + strand, within AO356_00835 at 190.808 kb on - strand, within AO356_00835 at 190.808 kb on - strand, within AO356_00835 at 190.808 kb on - strand, within AO356_00835 at 190.867 kb on - strand, within AO356_00835 at 190.867 kb on - strand, within AO356_00835 at 190.873 kb on + strand, within AO356_00835 at 190.879 kb on + strand, within AO356_00835 at 190.879 kb on + strand, within AO356_00835 at 190.963 kb on + strand, within AO356_00835 at 190.964 kb on - strand, within AO356_00835 at 190.977 kb on + strand, within AO356_00835 at 190.977 kb on + strand, within AO356_00835 at 191.115 kb on - strand, within AO356_00835 at 191.115 kb on - strand, within AO356_00835 at 191.115 kb on - strand, within AO356_00835 at 191.115 kb on - strand, within AO356_00835 at 191.176 kb on + strand, within AO356_00835 at 191.176 kb on + strand, within AO356_00835 at 191.177 kb on - strand, within AO356_00835 at 191.224 kb on + strand, within AO356_00835 at 191.225 kb on - strand, within AO356_00835 at 191.225 kb on - strand, within AO356_00835
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 10 mM remove 187,310 + -0.3 187,311 - +1.2 187,319 + -1.0 187,320 - -0.6 187,389 - +0.7 187,492 + -0.5 187,492 + +0.7 187,493 - +0.5 187,575 + +0.7 187,575 + +0.5 187,576 - +0.3 187,576 - -0.0 187,576 - +0.1 187,576 - +0.5 187,579 + -0.3 187,579 + +0.1 187,579 + -0.1 187,579 + -0.2 187,579 + -0.8 187,580 - -0.2 187,580 - +0.4 187,580 - +0.5 187,580 - -0.4 187,638 + +0.3 187,638 + -0.7 187,639 - -0.0 187,748 - +0.9 187,767 + +0.6 187,767 + -0.1 187,768 - +1.1 187,768 - +0.1 187,771 + -0.5 187,772 - +0.7 187,772 - +0.7 187,772 - +0.4 187,772 - -0.2 187,774 + +0.2 187,775 - +0.1 187,776 + +0.1 187,776 + +0.3 187,776 + +1.1 187,777 - -2.4 187,777 - -1.1 187,810 + +1.5 187,877 - +1.6 187,984 + +0.5 187,997 - -1.0 188,000 - -0.9 188,000 - -1.3 188,004 + +0.5 188,091 - +1.3 188,096 + -0.1 188,206 + -1.2 188,207 - +1.5 188,287 + -0.2 188,287 + +0.9 188,287 + +0.8 188,288 - +0.0 188,288 - +0.5 188,288 - -0.4 188,288 - +0.0 188,319 + +0.5 188,332 + +0.1 188,413 + +1.4 188,414 - -1.1 188,430 + -0.3 188,515 - AO356_00830 0.14 -0.5 188,588 + AO356_00830 0.18 -0.7 188,588 + AO356_00830 0.18 -0.8 188,589 - AO356_00830 0.18 -0.2 188,589 - AO356_00830 0.18 +1.0 188,589 - AO356_00830 0.18 -0.4 188,668 + AO356_00830 0.21 -0.1 188,668 + AO356_00830 0.21 -0.5 188,669 - AO356_00830 0.21 +0.9 188,722 + AO356_00830 0.24 +1.5 188,809 + AO356_00830 0.28 +0.5 188,853 + AO356_00830 0.30 +0.3 188,854 - AO356_00830 0.31 +0.9 188,922 + AO356_00830 0.34 +1.7 188,923 - AO356_00830 0.34 +0.8 188,923 - AO356_00830 0.34 +0.3 188,923 - AO356_00830 0.34 -0.6 188,931 - AO356_00830 0.34 -0.1 188,972 + AO356_00830 0.36 -0.1 188,973 - AO356_00830 0.36 +0.5 188,973 - AO356_00830 0.36 +0.1 188,973 - AO356_00830 0.36 +0.1 188,989 - AO356_00830 0.37 -1.3 189,097 + AO356_00830 0.42 -0.1 189,098 - AO356_00830 0.42 +0.1 189,380 + AO356_00830 0.56 +0.2 189,380 + AO356_00830 0.56 +0.3 189,380 + AO356_00830 0.56 +0.5 189,380 + AO356_00830 0.56 -0.8 189,380 + AO356_00830 0.56 -0.5 189,380 + AO356_00830 0.56 +0.0 189,381 - AO356_00830 0.56 -0.3 189,381 - AO356_00830 0.56 -1.5 189,381 - AO356_00830 0.56 -0.4 189,381 - AO356_00830 0.56 +0.6 189,381 - AO356_00830 0.56 -0.6 189,381 - AO356_00830 0.56 -0.8 189,384 + AO356_00830 0.56 +0.2 189,393 + AO356_00830 0.57 +0.3 189,393 + AO356_00830 0.57 -0.4 189,394 - AO356_00830 0.57 -0.4 189,394 - AO356_00830 0.57 -0.3 189,398 - AO356_00830 0.57 -0.5 189,529 + AO356_00830 0.63 +0.1 189,530 - AO356_00830 0.63 +0.6 189,530 - AO356_00830 0.63 -0.4 189,530 - AO356_00830 0.63 -0.3 189,721 + AO356_00830 0.73 +0.2 189,722 - AO356_00830 0.73 -0.4 189,722 - AO356_00830 0.73 +0.5 189,823 + AO356_00830 0.78 +0.1 189,823 + AO356_00830 0.78 +0.5 189,823 + AO356_00830 0.78 +0.0 189,824 - AO356_00830 0.78 +0.1 189,824 - AO356_00830 0.78 -0.1 189,824 - AO356_00830 0.78 -0.5 189,824 - AO356_00830 0.78 +0.2 189,824 - AO356_00830 0.78 +0.9 189,824 - AO356_00830 0.78 -0.1 189,828 - AO356_00830 0.78 +0.2 189,868 + AO356_00830 0.80 +0.5 189,888 + AO356_00830 0.81 -0.1 189,942 - AO356_00830 0.84 +0.4 189,969 + AO356_00830 0.85 +0.1 189,969 + AO356_00830 0.85 +0.2 189,970 - AO356_00830 0.85 +0.6 189,970 - AO356_00830 0.85 -0.1 190,051 + AO356_00830 0.89 -0.5 190,051 + AO356_00830 0.89 -0.5 190,051 + AO356_00830 0.89 -0.1 190,052 - AO356_00830 0.89 +0.2 190,052 - AO356_00830 0.89 +0.3 190,052 - AO356_00830 0.89 +0.5 190,084 + -0.8 190,085 - -0.9 190,088 + +0.5 190,088 + +0.7 190,088 + +0.8 190,088 + +0.5 190,088 + +0.7 190,088 + +1.1 190,088 + +0.1 190,089 - +0.7 190,089 - +0.7 190,089 - +0.3 190,089 - +0.3 190,089 - +0.5 190,089 - -2.0 190,243 + -0.6 190,244 - +0.5 190,263 + +0.8 190,263 + +0.4 190,264 - -0.3 190,264 - -1.4 190,271 + -0.5 190,271 + +0.9 190,309 + +0.7 190,310 - -1.2 190,337 + +1.0 190,337 + -0.6 190,337 + +1.5 190,337 + -0.3 190,338 - +0.0 190,355 - -0.1 190,424 + -0.5 190,425 - +0.1 190,440 + +0.4 190,440 + -0.5 190,460 - -0.1 190,460 - -0.8 190,556 + +0.9 190,556 + +0.7 190,556 + +0.5 190,557 - +0.9 190,557 - -0.3 190,557 - +1.7 190,557 - +0.9 190,587 + +0.2 190,587 + -0.2 190,588 - -1.7 190,617 - -0.6 190,739 + -0.4 190,740 - +0.3 190,740 - -0.4 190,800 + +0.7 190,801 - +0.3 190,801 - -1.9 190,801 - -1.2 190,801 - -0.8 190,803 + +0.6 190,804 - +1.3 190,807 + AO356_00835 0.10 +0.9 190,808 - AO356_00835 0.10 +0.7 190,808 - AO356_00835 0.10 -0.5 190,808 - AO356_00835 0.10 -1.1 190,867 - AO356_00835 0.16 +1.5 190,867 - AO356_00835 0.16 +0.4 190,873 + AO356_00835 0.16 +0.1 190,879 + AO356_00835 0.17 -0.5 190,879 + AO356_00835 0.17 +1.0 190,963 + AO356_00835 0.25 -1.1 190,964 - AO356_00835 0.25 -0.5 190,977 + AO356_00835 0.26 +0.1 190,977 + AO356_00835 0.26 +2.0 191,115 - AO356_00835 0.40 +0.3 191,115 - AO356_00835 0.40 +0.0 191,115 - AO356_00835 0.40 -0.0 191,115 - AO356_00835 0.40 +0.7 191,176 + AO356_00835 0.45 -0.2 191,176 + AO356_00835 0.45 -1.1 191,177 - AO356_00835 0.45 -0.4 191,224 + AO356_00835 0.50 +0.1 191,225 - AO356_00835 0.50 -0.4 191,225 - AO356_00835 0.50 +1.1
Or see this region's nucleotide sequence