Strain Fitness in Shewanella loihica PV-4 around Shew_1903

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1901 and Shew_1902 are separated by 111 nucleotidesShew_1902 and Shew_1903 are separated by 17 nucleotidesShew_1903 and Shew_1904 are separated by 127 nucleotides Shew_1901: Shew_1901 - hypothetical protein (RefSeq), at 2,196,652 to 2,196,987 _1901 Shew_1902: Shew_1902 - NUDIX hydrolase (RefSeq), at 2,197,099 to 2,197,668 _1902 Shew_1903: Shew_1903 - para-aminobenzoate synthase, subunit I (RefSeq), at 2,197,686 to 2,199,119 _1903 Shew_1904: Shew_1904 - tartrate/fumarate subfamily Fe-S type hydro-lyase alpha subunit (RefSeq), at 2,199,247 to 2,200,770 _1904 Position (kb) 2197 2198 2199 2200Strain fitness (log2 ratio) -1 0 1at 2196.752 kb on - strand, within Shew_1901at 2196.841 kb on + strand, within Shew_1901at 2197.052 kb on - strandat 2197.052 kb on - strandat 2197.758 kb on - strandat 2198.410 kb on - strand, within Shew_1903at 2198.630 kb on - strand, within Shew_1903at 2199.025 kb on - strandat 2199.524 kb on - strand, within Shew_1904at 2199.929 kb on - strand, within Shew_1904

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,196,752 - Shew_1901 0.30 +0.2
2,196,841 + Shew_1901 0.56 +1.2
2,197,052 - +0.5
2,197,052 - -0.0
2,197,758 - -0.4
2,198,410 - Shew_1903 0.50 +0.6
2,198,630 - Shew_1903 0.66 +0.2
2,199,025 - -0.0
2,199,524 - Shew_1904 0.18 -0.3
2,199,929 - Shew_1904 0.45 -0.7

Or see this region's nucleotide sequence