Strain Fitness in Shewanella loihica PV-4 around Shew_1901

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntasnC and Shew_1901 are separated by 246 nucleotidesShew_1901 and Shew_1902 are separated by 111 nucleotidesShew_1902 and Shew_1903 are separated by 17 nucleotides Shew_1900: asnC - asparaginyl-tRNA synthetase (RefSeq), at 2,195,005 to 2,196,405 asnC Shew_1901: Shew_1901 - hypothetical protein (RefSeq), at 2,196,652 to 2,196,987 _1901 Shew_1902: Shew_1902 - NUDIX hydrolase (RefSeq), at 2,197,099 to 2,197,668 _1902 Shew_1903: Shew_1903 - para-aminobenzoate synthase, subunit I (RefSeq), at 2,197,686 to 2,199,119 _1903 Position (kb) 2196 2197Strain fitness (log2 ratio) -1 0 1at 2196.566 kb on + strandat 2196.594 kb on + strandat 2196.752 kb on - strand, within Shew_1901at 2196.841 kb on + strand, within Shew_1901at 2197.052 kb on - strandat 2197.052 kb on - strandat 2197.758 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
2,196,566 + -0.2
2,196,594 + +0.0
2,196,752 - Shew_1901 0.30 +0.2
2,196,841 + Shew_1901 0.56 +1.2
2,197,052 - +0.5
2,197,052 - -0.0
2,197,758 - -0.4

Or see this region's nucleotide sequence