Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0504

Experiment: nitrate (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0502 and Dshi_0503 are separated by 58 nucleotidesDshi_0503 and Dshi_0504 are separated by 3 nucleotidesDshi_0504 and Dshi_0505 are separated by 14 nucleotidesDshi_0505 and Dshi_0506 are separated by 13 nucleotides Dshi_0502: Dshi_0502 - cytoplasmic chaperone TorD family protein (RefSeq), at 486,380 to 487,042 _0502 Dshi_0503: Dshi_0503 - twin-arginine translocation pathway signal (RefSeq), at 487,101 to 487,310 _0503 Dshi_0504: Dshi_0504 - molybdopterin oxidoreductase (RefSeq), at 487,314 to 490,274 _0504 Dshi_0505: Dshi_0505 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 490,289 to 490,885 _0505 Dshi_0506: Dshi_0506 - formate dehydrogenase, gamma subunit (RefSeq), at 490,899 to 491,927 _0506 Position (kb) 487 488 489 490 491Strain fitness (log2 ratio) -2 -1 0 1 2at 486.371 kb on + strandat 486.393 kb on + strandat 486.398 kb on + strandat 486.398 kb on + strandat 486.398 kb on + strandat 486.398 kb on + strandat 486.398 kb on + strandat 486.398 kb on + strandat 486.398 kb on + strandat 486.398 kb on + strandat 486.403 kb on + strandat 486.403 kb on + strandat 486.403 kb on + strandat 486.406 kb on - strandat 486.406 kb on - strandat 486.406 kb on - strandat 486.406 kb on - strandat 486.406 kb on - strandat 486.406 kb on - strandat 486.411 kb on - strandat 486.411 kb on - strandat 486.511 kb on - strand, within Dshi_0502at 486.533 kb on + strand, within Dshi_0502at 486.533 kb on + strand, within Dshi_0502at 486.544 kb on + strand, within Dshi_0502at 486.544 kb on + strand, within Dshi_0502at 486.552 kb on - strand, within Dshi_0502at 486.554 kb on + strand, within Dshi_0502at 486.559 kb on + strand, within Dshi_0502at 486.562 kb on - strand, within Dshi_0502at 486.624 kb on - strand, within Dshi_0502at 486.646 kb on + strand, within Dshi_0502at 486.691 kb on - strand, within Dshi_0502at 486.721 kb on + strand, within Dshi_0502at 486.734 kb on - strand, within Dshi_0502at 486.824 kb on + strand, within Dshi_0502at 486.832 kb on - strand, within Dshi_0502at 486.837 kb on - strand, within Dshi_0502at 486.837 kb on - strand, within Dshi_0502at 486.840 kb on + strand, within Dshi_0502at 486.848 kb on - strand, within Dshi_0502at 486.887 kb on + strand, within Dshi_0502at 486.902 kb on + strand, within Dshi_0502at 486.939 kb on + strand, within Dshi_0502at 486.947 kb on - strand, within Dshi_0502at 486.978 kb on - strandat 487.022 kb on - strandat 487.087 kb on + strandat 487.170 kb on + strand, within Dshi_0503at 487.178 kb on - strand, within Dshi_0503at 487.179 kb on + strand, within Dshi_0503at 487.220 kb on + strand, within Dshi_0503at 487.228 kb on - strand, within Dshi_0503at 487.272 kb on + strand, within Dshi_0503at 487.272 kb on + strand, within Dshi_0503at 487.273 kb on - strand, within Dshi_0503at 487.319 kb on + strandat 487.395 kb on - strandat 487.417 kb on + strandat 487.425 kb on - strandat 487.425 kb on - strandat 487.435 kb on - strandat 487.459 kb on - strandat 487.489 kb on - strandat 487.540 kb on - strandat 487.561 kb on - strandat 487.561 kb on - strandat 487.605 kb on - strandat 487.615 kb on - strand, within Dshi_0504at 487.671 kb on + strand, within Dshi_0504at 487.944 kb on + strand, within Dshi_0504at 487.951 kb on - strand, within Dshi_0504at 487.953 kb on - strand, within Dshi_0504at 487.972 kb on - strand, within Dshi_0504at 488.159 kb on + strand, within Dshi_0504at 488.159 kb on - strand, within Dshi_0504at 488.182 kb on - strand, within Dshi_0504at 488.256 kb on - strand, within Dshi_0504at 488.261 kb on - strand, within Dshi_0504at 488.270 kb on + strand, within Dshi_0504at 488.308 kb on - strand, within Dshi_0504at 488.356 kb on + strand, within Dshi_0504at 488.364 kb on - strand, within Dshi_0504at 488.397 kb on + strand, within Dshi_0504at 488.439 kb on - strand, within Dshi_0504at 488.475 kb on - strand, within Dshi_0504at 488.501 kb on + strand, within Dshi_0504at 488.509 kb on - strand, within Dshi_0504at 488.557 kb on + strand, within Dshi_0504at 488.567 kb on + strand, within Dshi_0504at 488.575 kb on - strand, within Dshi_0504at 488.640 kb on - strand, within Dshi_0504at 488.648 kb on + strand, within Dshi_0504at 488.656 kb on - strand, within Dshi_0504at 488.719 kb on + strand, within Dshi_0504at 488.742 kb on - strand, within Dshi_0504at 488.745 kb on + strand, within Dshi_0504at 488.827 kb on + strand, within Dshi_0504at 488.835 kb on - strand, within Dshi_0504at 488.975 kb on - strand, within Dshi_0504at 488.990 kb on - strand, within Dshi_0504at 489.136 kb on + strand, within Dshi_0504at 489.193 kb on + strand, within Dshi_0504at 489.232 kb on + strand, within Dshi_0504at 489.264 kb on + strand, within Dshi_0504at 489.299 kb on + strand, within Dshi_0504at 489.299 kb on + strand, within Dshi_0504at 489.478 kb on + strand, within Dshi_0504at 489.615 kb on - strand, within Dshi_0504at 489.786 kb on + strand, within Dshi_0504at 489.819 kb on + strand, within Dshi_0504at 489.819 kb on + strand, within Dshi_0504at 489.824 kb on + strand, within Dshi_0504at 489.875 kb on - strand, within Dshi_0504at 489.882 kb on - strand, within Dshi_0504at 489.885 kb on - strand, within Dshi_0504at 489.893 kb on + strand, within Dshi_0504at 489.955 kb on + strand, within Dshi_0504at 490.103 kb on + strandat 490.158 kb on - strandat 490.158 kb on - strandat 490.172 kb on + strandat 490.180 kb on - strandat 490.186 kb on - strandat 490.195 kb on - strandat 490.199 kb on - strandat 490.210 kb on + strandat 490.217 kb on + strandat 490.218 kb on - strandat 490.251 kb on - strandat 490.269 kb on + strandat 490.269 kb on + strandat 490.269 kb on + strandat 490.269 kb on + strandat 490.269 kb on + strandat 490.277 kb on - strandat 490.277 kb on - strandat 490.314 kb on + strandat 490.354 kb on - strand, within Dshi_0505at 490.438 kb on + strand, within Dshi_0505at 490.469 kb on - strand, within Dshi_0505at 490.484 kb on - strand, within Dshi_0505at 490.521 kb on + strand, within Dshi_0505at 490.543 kb on + strand, within Dshi_0505at 490.566 kb on + strand, within Dshi_0505at 490.635 kb on - strand, within Dshi_0505at 490.707 kb on - strand, within Dshi_0505at 490.731 kb on - strand, within Dshi_0505at 490.750 kb on - strand, within Dshi_0505at 490.755 kb on - strand, within Dshi_0505at 490.825 kb on + strand, within Dshi_0505at 490.825 kb on - strand, within Dshi_0505at 490.852 kb on + strandat 490.884 kb on + strandat 490.884 kb on + strandat 490.892 kb on - strandat 490.958 kb on + strandat 490.979 kb on + strandat 490.979 kb on + strandat 490.987 kb on - strandat 490.987 kb on - strandat 490.987 kb on - strandat 491.102 kb on + strand, within Dshi_0506at 491.123 kb on + strand, within Dshi_0506at 491.140 kb on - strand, within Dshi_0506at 491.150 kb on + strand, within Dshi_0506at 491.158 kb on - strand, within Dshi_0506at 491.158 kb on - strand, within Dshi_0506at 491.184 kb on - strand, within Dshi_0506at 491.263 kb on + strand, within Dshi_0506

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate (N)
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486,371 + -2.3
486,393 + +0.1
486,398 + +2.0
486,398 + +0.1
486,398 + -0.6
486,398 + -0.2
486,398 + -0.2
486,398 + -0.8
486,398 + +0.0
486,398 + -0.1
486,403 + -0.7
486,403 + -0.1
486,403 + -0.1
486,406 - +0.1
486,406 - -0.6
486,406 - -1.0
486,406 - -0.9
486,406 - +0.3
486,406 - -0.7
486,411 - +0.1
486,411 - -1.5
486,511 - Dshi_0502 0.20 -0.4
486,533 + Dshi_0502 0.23 +0.8
486,533 + Dshi_0502 0.23 +0.0
486,544 + Dshi_0502 0.25 +0.6
486,544 + Dshi_0502 0.25 +0.1
486,552 - Dshi_0502 0.26 +1.7
486,554 + Dshi_0502 0.26 -0.7
486,559 + Dshi_0502 0.27 -0.2
486,562 - Dshi_0502 0.27 -0.1
486,624 - Dshi_0502 0.37 +0.3
486,646 + Dshi_0502 0.40 -0.6
486,691 - Dshi_0502 0.47 -0.7
486,721 + Dshi_0502 0.51 +0.1
486,734 - Dshi_0502 0.53 +0.9
486,824 + Dshi_0502 0.67 +0.6
486,832 - Dshi_0502 0.68 +0.5
486,837 - Dshi_0502 0.69 -0.5
486,837 - Dshi_0502 0.69 -0.1
486,840 + Dshi_0502 0.69 -1.3
486,848 - Dshi_0502 0.71 -1.4
486,887 + Dshi_0502 0.76 +0.4
486,902 + Dshi_0502 0.79 +0.0
486,939 + Dshi_0502 0.84 +0.2
486,947 - Dshi_0502 0.86 +0.2
486,978 - -0.7
487,022 - -0.2
487,087 + +1.2
487,170 + Dshi_0503 0.33 +0.6
487,178 - Dshi_0503 0.37 -0.2
487,179 + Dshi_0503 0.37 -0.5
487,220 + Dshi_0503 0.57 -0.0
487,228 - Dshi_0503 0.60 -0.1
487,272 + Dshi_0503 0.81 -1.9
487,272 + Dshi_0503 0.81 -0.4
487,273 - Dshi_0503 0.82 -0.3
487,319 + -1.5
487,395 - -0.5
487,417 + -0.6
487,425 - -0.6
487,425 - -1.4
487,435 - -1.9
487,459 - -0.7
487,489 - +0.3
487,540 - -0.6
487,561 - -0.3
487,561 - -0.3
487,605 - -1.5
487,615 - Dshi_0504 0.10 -0.2
487,671 + Dshi_0504 0.12 +0.8
487,944 + Dshi_0504 0.21 +0.5
487,951 - Dshi_0504 0.22 -1.5
487,953 - Dshi_0504 0.22 +0.4
487,972 - Dshi_0504 0.22 +0.3
488,159 + Dshi_0504 0.29 +0.2
488,159 - Dshi_0504 0.29 -0.7
488,182 - Dshi_0504 0.29 +0.3
488,256 - Dshi_0504 0.32 -0.7
488,261 - Dshi_0504 0.32 -1.1
488,270 + Dshi_0504 0.32 +1.0
488,308 - Dshi_0504 0.34 -1.0
488,356 + Dshi_0504 0.35 +1.1
488,364 - Dshi_0504 0.35 +0.9
488,397 + Dshi_0504 0.37 -0.9
488,439 - Dshi_0504 0.38 -0.2
488,475 - Dshi_0504 0.39 -0.1
488,501 + Dshi_0504 0.40 +1.0
488,509 - Dshi_0504 0.40 -0.2
488,557 + Dshi_0504 0.42 -1.2
488,567 + Dshi_0504 0.42 -0.9
488,575 - Dshi_0504 0.43 -0.6
488,640 - Dshi_0504 0.45 -0.0
488,648 + Dshi_0504 0.45 -1.0
488,656 - Dshi_0504 0.45 +0.2
488,719 + Dshi_0504 0.47 -0.3
488,742 - Dshi_0504 0.48 +0.5
488,745 + Dshi_0504 0.48 +0.4
488,827 + Dshi_0504 0.51 +0.4
488,835 - Dshi_0504 0.51 -0.6
488,975 - Dshi_0504 0.56 +1.1
488,990 - Dshi_0504 0.57 -0.4
489,136 + Dshi_0504 0.62 +0.1
489,193 + Dshi_0504 0.63 -0.7
489,232 + Dshi_0504 0.65 +0.8
489,264 + Dshi_0504 0.66 +1.3
489,299 + Dshi_0504 0.67 -0.3
489,299 + Dshi_0504 0.67 +0.9
489,478 + Dshi_0504 0.73 +0.7
489,615 - Dshi_0504 0.78 -1.5
489,786 + Dshi_0504 0.83 +2.4
489,819 + Dshi_0504 0.85 +0.1
489,819 + Dshi_0504 0.85 -0.2
489,824 + Dshi_0504 0.85 +0.7
489,875 - Dshi_0504 0.86 -0.9
489,882 - Dshi_0504 0.87 -0.5
489,885 - Dshi_0504 0.87 +0.4
489,893 + Dshi_0504 0.87 +0.0
489,955 + Dshi_0504 0.89 +0.1
490,103 + -0.3
490,158 - -1.0
490,158 - -0.2
490,172 + +0.5
490,180 - -0.2
490,186 - +0.4
490,195 - -0.2
490,199 - +1.3
490,210 + +0.6
490,217 + -0.2
490,218 - +0.9
490,251 - +0.1
490,269 + +0.9
490,269 + +0.9
490,269 + +0.3
490,269 + +0.7
490,269 + +0.2
490,277 - +0.3
490,277 - +1.3
490,314 + -1.0
490,354 - Dshi_0505 0.11 +0.9
490,438 + Dshi_0505 0.25 -0.8
490,469 - Dshi_0505 0.30 -0.1
490,484 - Dshi_0505 0.33 +0.4
490,521 + Dshi_0505 0.39 -1.1
490,543 + Dshi_0505 0.43 +0.3
490,566 + Dshi_0505 0.46 -0.7
490,635 - Dshi_0505 0.58 -0.0
490,707 - Dshi_0505 0.70 +0.3
490,731 - Dshi_0505 0.74 +0.4
490,750 - Dshi_0505 0.77 +1.3
490,755 - Dshi_0505 0.78 -0.3
490,825 + Dshi_0505 0.90 +1.6
490,825 - Dshi_0505 0.90 -0.2
490,852 + -0.5
490,884 + -2.3
490,884 + -0.2
490,892 - -0.0
490,958 + -0.8
490,979 + -1.5
490,979 + +0.2
490,987 - -0.1
490,987 - +0.6
490,987 - -0.2
491,102 + Dshi_0506 0.20 -0.0
491,123 + Dshi_0506 0.22 -0.1
491,140 - Dshi_0506 0.23 -1.1
491,150 + Dshi_0506 0.24 +0.1
491,158 - Dshi_0506 0.25 -0.4
491,158 - Dshi_0506 0.25 +0.1
491,184 - Dshi_0506 0.28 +0.9
491,263 + Dshi_0506 0.35 +0.4

Or see this region's nucleotide sequence