Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS06595

Experiment: pyruvate 20 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pyruvate 20 mM
1,416,755	+		LRK54_RS06590	0.80	-0.9
1,416,755	+		LRK54_RS06590	0.80	-1.5
1,416,755	+		LRK54_RS06590	0.80	-0.4
1,416,755	+		LRK54_RS06590	0.80	-1.1
1,416,755	+		LRK54_RS06590	0.80	-0.1
1,416,755	+		LRK54_RS06590	0.80	+0.6
1,416,755	+		LRK54_RS06590	0.80	-0.9
1,416,755	+		LRK54_RS06590	0.80	+0.1
1,416,755	+		LRK54_RS06590	0.80	+0.6
1,416,755	+		LRK54_RS06590	0.80	-0.6
1,416,755	+		LRK54_RS06590	0.80	-0.2
1,416,756	-		LRK54_RS06590	0.80	-0.4
1,416,756	-		LRK54_RS06590	0.80	+0.2
1,416,756	-		LRK54_RS06590	0.80	+0.9
1,416,756	-		LRK54_RS06590	0.80	+0.5
1,416,756	-		LRK54_RS06590	0.80	-0.2
1,416,756	-		LRK54_RS06590	0.80	+0.1
1,416,756	-		LRK54_RS06590	0.80	+0.4
1,416,756	-		LRK54_RS06590	0.80	+2.1
1,416,756	-		LRK54_RS06590	0.80	-0.5
1,416,756	-		LRK54_RS06590	0.80	+1.6
1,416,756	-		LRK54_RS06590	0.80	+0.4
1,416,756	-		LRK54_RS06590	0.80	+1.8
1,416,869	+		LRK54_RS06590	0.90	+1.1
1,416,869	+		LRK54_RS06590	0.90	+0.0
1,416,869	+		LRK54_RS06590	0.90	-0.2
1,416,869	+		LRK54_RS06590	0.90	+0.3
1,416,869	+		LRK54_RS06590	0.90	-1.6
1,416,869	+		LRK54_RS06590	0.90	-0.2
1,416,869	+		LRK54_RS06590	0.90	+0.8
1,416,869	+		LRK54_RS06590	0.90	+0.5
1,416,869	+		LRK54_RS06590	0.90	-0.5
1,416,870	-		LRK54_RS06590	0.90	-0.6
1,416,870	-		LRK54_RS06590	0.90	+0.3
1,416,870	-		LRK54_RS06590	0.90	+0.1
1,416,870	-		LRK54_RS06590	0.90	+1.3
1,416,870	-		LRK54_RS06590	0.90	+0.6
1,416,870	-		LRK54_RS06590	0.90	-0.2
1,416,870	-		LRK54_RS06590	0.90	-0.9
1,416,870	-		LRK54_RS06590	0.90	+0.2
1,416,870	-		LRK54_RS06590	0.90	+0.3
1,416,870	-		LRK54_RS06590	0.90	+0.5
1,416,870	-		LRK54_RS06590	0.90	-0.7
1,416,870	-		LRK54_RS06590	0.90	-1.0
1,416,870	-		LRK54_RS06590	0.90	-0.1
1,416,938	+				-0.6
1,416,938	+				+0.3
1,416,938	+				-0.6
1,416,938	+				-1.7
1,416,938	+				-0.7
1,416,938	+				-0.2
1,416,938	+				+0.4
1,416,938	+				-0.1
1,416,938	+				+0.2
1,416,938	+				+0.2
1,416,938	+				-0.1
1,416,938	+				+0.9
1,416,939	-				-0.5
1,416,939	-				+0.3
1,416,939	-				+0.9
1,416,939	-				+0.4
1,416,939	-				-0.5
1,416,939	-				+1.3
1,416,939	-				-1.3
1,416,939	-				-1.3
1,416,939	-				+0.2
1,416,939	-				-1.7
1,416,939	-				+0.5
1,416,939	-				-0.1
1,416,939	-				-0.0
1,416,939	-				+0.1
1,416,939	-				-0.1
1,416,939	-				+0.2
1,416,939	-				+0.5
1,416,939	-				+0.1
1,416,939	-				-0.1
1,416,992	+				-0.7
1,416,992	+				-1.6
1,416,992	+				-0.8
1,416,992	+				-0.2
1,416,992	+				-0.1
1,416,992	+				-0.6
1,416,992	+				-0.5
1,416,992	+				+1.0
1,416,992	+				+0.5
1,416,992	+				+0.0
1,416,992	+				-0.1
1,416,992	+				+0.2
1,416,992	+				-0.5
1,416,992	+				+0.4
1,416,992	+				+0.2
1,416,992	+				+0.1
1,416,992	+				-0.9
1,416,992	+				-0.2
1,416,992	+				-1.1
1,416,992	+				+1.8
1,416,992	+				+0.1
1,416,992	+				+0.2
1,416,992	+				-0.2
1,416,992	+				-0.2
1,416,992	+				-2.3
1,416,992	+				-0.3
1,416,992	+				+0.1
1,416,992	+				-1.4
1,416,992	+				-0.3
1,416,992	+				+0.3
1,416,992	+				+0.2
1,416,992	+				+0.2
1,416,992	+				-0.5
1,416,992	+				+0.5
1,416,992	+				-1.6
1,416,992	+				+1.8
1,416,992	+				-0.2
1,416,992	+				+0.2
1,416,992	+				-0.3
1,416,992	+				+1.3
1,416,992	+				-0.9
1,416,992	+				+0.8
1,416,992	+				-0.9
1,416,993	-				-0.6
1,416,993	-				-0.0
1,416,993	-				+0.8
1,416,993	-				+0.3
1,416,993	-				+0.2
1,416,993	-				+0.3
1,416,993	-				-0.9
1,416,993	-				+0.6
1,416,993	-				+0.0
1,416,993	-				-0.2
1,416,993	-				+0.2
1,416,993	-				+0.5
1,416,993	-				-0.2
1,416,993	-				+2.0
1,416,993	-				+0.1
1,416,993	-				-0.8
1,416,993	-				-0.6
1,416,993	-				+0.9
1,416,993	-				+0.3
1,416,993	-				-1.8
1,416,993	-				-0.4
1,416,993	-				-0.0
1,416,993	-				+0.3
1,416,993	-				+0.1
1,416,993	-				+0.4
1,416,993	-				+0.2
1,416,993	-				-0.6
1,416,993	-				-1.9
1,416,993	-				+2.2
1,416,993	-				-0.9
1,416,993	-				-0.3
1,416,993	-				-2.5
1,416,993	-				-0.7
1,416,993	-				-0.2
1,416,993	-				+0.3
1,416,993	-				+0.0
1,416,993	-				-1.4
1,416,993	-				+0.8
1,416,993	-				+0.3
1,416,993	-				+1.6
1,416,993	-				-0.8
1,416,993	-				-0.1
1,416,993	-				+0.0
1,416,993	-				-1.1
1,416,993	-				-1.0
1,416,993	-				-0.4
1,416,993	-				-0.5
1,416,993	-				+0.5
1,417,049	+				+0.7
1,417,049	+				+0.5
1,417,049	+				-1.4
1,417,049	+				+0.6
1,417,049	+				+0.5
1,417,049	+				-0.2
1,417,049	+				-0.2
1,417,049	+				-0.6
1,417,049	+				+0.6
1,417,049	+				+0.2
1,417,049	+				-1.2
1,417,049	+				-0.2
1,417,049	+				-1.1
1,417,049	+				+0.4
1,417,049	+				-0.2
1,417,050	-				-0.7
1,417,050	-				-0.1
1,417,050	-				-0.8
1,417,050	-				+0.7
1,417,050	-				+0.5
1,417,050	-				-0.8
1,417,050	-				+0.4
1,417,050	-				-0.1
1,417,050	-				-0.4
1,417,050	-				-0.7
1,417,050	-				-0.4
1,417,050	-				+0.7
1,417,050	-				+1.4
1,417,050	-				-0.7
1,417,089	+				+0.3
1,417,089	+				-1.1
1,417,089	+				+1.2
1,417,089	+				-0.8
1,417,089	+				-0.2
1,417,089	+				+0.3
1,417,089	+				-0.3
1,417,089	+				-0.0
1,417,090	-				+1.0
1,417,090	-				+0.3
1,417,090	-				-0.7
1,417,090	-				+0.6
1,417,090	-				-1.4
1,417,090	-				+1.1
1,417,090	-				-2.1
1,417,090	-				+0.4
1,417,090	-				+0.9
1,417,090	-				-0.1
1,417,090	-				-1.2
1,417,090	-				-0.5
1,417,090	-				-0.9
1,417,090	-				+1.8
1,417,090	-				-0.4
1,417,109	+				-0.6
1,417,109	+				-0.4
1,417,109	+				-0.0
1,417,109	+				+0.3
1,417,109	+				+2.2
1,417,109	+				-0.3
1,417,109	+				-0.1
1,417,110	-				-0.5
1,417,110	-				+2.6
1,417,110	-				-0.2
1,417,110	-				-1.1
1,417,110	-				-1.4
1,417,110	-				-0.2
1,417,110	-				+0.5
1,417,110	-				+0.2
1,417,121	+				+0.0
1,417,191	+				+0.3
1,417,191	+				-0.1
1,417,191	+				-1.8
1,417,191	+				+0.1
1,417,191	+				-0.6
1,417,191	+				-1.3
1,417,192	-				-1.2
1,417,192	-				-0.1
1,417,192	-				-0.2
1,417,301	+				-0.5
1,417,301	+				+0.2
1,417,301	+				+0.0
1,417,301	+				-0.1
1,417,301	+				-0.7
1,417,301	+				-0.8
1,417,301	+				+0.3
1,417,301	+				-0.4
1,417,301	+				-0.9
1,417,301	+				+0.1
1,417,301	+				+0.2
1,417,301	+				+1.8
1,417,302	-				-0.2
1,417,302	-				+1.8
1,417,302	-				+1.0
1,417,302	-				+1.2
1,417,302	-				+0.8
1,417,302	-				+0.5
1,417,302	-				-0.8
1,417,302	-				-0.2
1,417,302	-				+1.8
1,417,302	-				-0.2
1,417,302	-				+1.8
1,417,302	-				-0.1
1,417,302	-				+0.2
1,417,302	-				-0.6
1,417,353	+				+1.5
1,417,417	-				+0.2
1,417,536	+				-0.2
1,417,536	+				-1.3
1,417,537	-				-0.8
1,417,537	-				+0.2
1,417,659	+				+0.8
1,417,660	-				+0.7
1,417,660	-				+0.5
1,417,710	+		LRK54_RS06595	0.12	+0.6
1,417,710	+		LRK54_RS06595	0.12	+0.2
1,417,710	+		LRK54_RS06595	0.12	-1.6
1,417,710	+		LRK54_RS06595	0.12	-0.2
1,417,710	+		LRK54_RS06595	0.12	+0.8
1,417,710	+		LRK54_RS06595	0.12	-0.1
1,417,711	-		LRK54_RS06595	0.13	+0.2
1,417,711	-		LRK54_RS06595	0.13	+1.3
1,417,711	-		LRK54_RS06595	0.13	+0.3
1,417,711	-		LRK54_RS06595	0.13	+0.0
1,417,711	-		LRK54_RS06595	0.13	-1.2
1,417,711	-		LRK54_RS06595	0.13	+0.2
1,417,711	-		LRK54_RS06595	0.13	-1.4
1,417,711	-		LRK54_RS06595	0.13	+0.1
1,417,711	-		LRK54_RS06595	0.13	+0.4
1,417,711	-		LRK54_RS06595	0.13	-0.2
1,417,711	-		LRK54_RS06595	0.13	+0.2
1,417,766	-		LRK54_RS06595	0.16	-0.6
1,418,064	+		LRK54_RS06595	0.38	+0.1
1,418,064	+		LRK54_RS06595	0.38	-0.1
1,418,064	+		LRK54_RS06595	0.38	-0.0
1,418,064	+		LRK54_RS06595	0.38	-0.1
1,418,065	-		LRK54_RS06595	0.38	-0.0
1,418,065	-		LRK54_RS06595	0.38	+0.8
1,418,065	-		LRK54_RS06595	0.38	+0.9
1,418,065	-		LRK54_RS06595	0.38	+3.8
1,418,065	-		LRK54_RS06595	0.38	+0.2
1,418,067	+		LRK54_RS06595	0.38	-0.1
1,418,067	+		LRK54_RS06595	0.38	-0.9
1,418,067	+		LRK54_RS06595	0.38	-0.1
1,418,067	+		LRK54_RS06595	0.38	+0.2
1,418,067	+		LRK54_RS06595	0.38	+0.0
1,418,067	+		LRK54_RS06595	0.38	+0.1
1,418,067	+		LRK54_RS06595	0.38	+0.8
1,418,067	+		LRK54_RS06595	0.38	-0.3
1,418,067	+		LRK54_RS06595	0.38	-0.7
1,418,067	+		LRK54_RS06595	0.38	-0.8
1,418,067	+		LRK54_RS06595	0.38	+0.4
1,418,067	+		LRK54_RS06595	0.38	+0.8
1,418,067	+		LRK54_RS06595	0.38	+0.5
1,418,067	+		LRK54_RS06595	0.38	+0.4
1,418,067	+		LRK54_RS06595	0.38	-1.1
1,418,067	+		LRK54_RS06595	0.38	+0.2
1,418,067	+		LRK54_RS06595	0.38	+0.3
1,418,067	+		LRK54_RS06595	0.38	+1.0
1,418,067	+		LRK54_RS06595	0.38	-0.8
1,418,067	+		LRK54_RS06595	0.38	-1.4
1,418,067	+		LRK54_RS06595	0.38	-0.6
1,418,067	+		LRK54_RS06595	0.38	+0.9
1,418,067	+		LRK54_RS06595	0.38	+0.8
1,418,067	+		LRK54_RS06595	0.38	-0.2
1,418,067	+		LRK54_RS06595	0.38	-0.4
1,418,067	+		LRK54_RS06595	0.38	-0.3
1,418,067	+		LRK54_RS06595	0.38	-1.7
1,418,068	-		LRK54_RS06595	0.38	-0.5
1,418,068	-		LRK54_RS06595	0.38	-0.2
1,418,068	-		LRK54_RS06595	0.38	+0.2
1,418,068	-		LRK54_RS06595	0.38	+0.2
1,418,068	-		LRK54_RS06595	0.38	-0.8
1,418,068	-		LRK54_RS06595	0.38	-0.1
1,418,068	-		LRK54_RS06595	0.38	-0.1
1,418,068	-		LRK54_RS06595	0.38	-0.9
1,418,068	-		LRK54_RS06595	0.38	+0.2
1,418,068	-		LRK54_RS06595	0.38	+0.7
1,418,068	-		LRK54_RS06595	0.38	-0.2
1,418,068	-		LRK54_RS06595	0.38	+1.5
1,418,068	-		LRK54_RS06595	0.38	+0.9
1,418,068	-		LRK54_RS06595	0.38	-0.2
1,418,068	-		LRK54_RS06595	0.38	-0.0
1,418,068	-		LRK54_RS06595	0.38	-1.3
1,418,068	-		LRK54_RS06595	0.38	-0.6
1,418,068	-		LRK54_RS06595	0.38	-0.7
1,418,068	-		LRK54_RS06595	0.38	+0.9
1,418,068	-		LRK54_RS06595	0.38	-0.1
1,418,068	-		LRK54_RS06595	0.38	-0.6
1,418,123	-		LRK54_RS06595	0.42	+0.4
1,418,123	-		LRK54_RS06595	0.42	-0.1
1,418,150	+		LRK54_RS06595	0.44	+0.5
1,418,151	-		LRK54_RS06595	0.44	-1.6
1,418,488	+		LRK54_RS06595	0.68	+1.3
1,418,490	+		LRK54_RS06595	0.68	-0.4
1,418,490	+		LRK54_RS06595	0.68	+2.3
1,418,490	+		LRK54_RS06595	0.68	-0.2
1,418,490	+		LRK54_RS06595	0.68	-0.0
1,418,490	+		LRK54_RS06595	0.68	+0.9
1,418,490	+		LRK54_RS06595	0.68	+0.7
1,418,490	+		LRK54_RS06595	0.68	+1.8
1,418,490	+		LRK54_RS06595	0.68	+0.5
1,418,490	+		LRK54_RS06595	0.68	-0.4
1,418,490	+		LRK54_RS06595	0.68	+0.8
1,418,490	+		LRK54_RS06595	0.68	-0.6
1,418,490	+		LRK54_RS06595	0.68	+0.5
1,418,490	+		LRK54_RS06595	0.68	-0.6
1,418,490	+		LRK54_RS06595	0.68	-0.2
1,418,490	+		LRK54_RS06595	0.68	+0.4
1,418,491	-		LRK54_RS06595	0.68	-2.1
1,418,491	-		LRK54_RS06595	0.68	+0.8
1,418,491	-		LRK54_RS06595	0.68	+0.4
1,418,491	-		LRK54_RS06595	0.68	-0.4
1,418,491	-		LRK54_RS06595	0.68	-0.2
1,418,491	-		LRK54_RS06595	0.68	+0.5
1,418,491	-		LRK54_RS06595	0.68	-1.8
1,418,491	-		LRK54_RS06595	0.68	-1.6
1,418,491	-		LRK54_RS06595	0.68	-1.4
1,418,491	-		LRK54_RS06595	0.68	+0.0
1,418,491	-		LRK54_RS06595	0.68	+0.2
1,418,560	+		LRK54_RS06595	0.73	-0.2
1,418,560	+		LRK54_RS06595	0.73	-0.8
1,418,560	+		LRK54_RS06595	0.73	-0.2
1,418,560	+		LRK54_RS06595	0.73	-0.6
1,418,560	+		LRK54_RS06595	0.73	+1.5
1,418,561	-		LRK54_RS06595	0.73	-0.1
1,418,561	-		LRK54_RS06595	0.73	+0.5
1,418,561	-		LRK54_RS06595	0.73	+0.3
1,418,561	-		LRK54_RS06595	0.73	+0.3
1,418,561	-		LRK54_RS06595	0.73	-0.4
1,418,561	-		LRK54_RS06595	0.73	+0.4
1,418,561	-		LRK54_RS06595	0.73	-0.3
1,418,561	-		LRK54_RS06595	0.73	-0.9
1,418,733	+		LRK54_RS06595	0.85	-0.7
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