Strain Fitness in Pantoea sp. MT58 around IAI47_19410

Experiment: Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
107,527	+				-0.8
107,527	+				-0.8
107,528	-				-0.2
107,528	-				+1.3
107,531	-				-0.8
107,547	+				+2.2
107,547	+				+0.3
107,548	-				-0.2
107,584	+				+1.6
107,584	+				-3.2
107,584	+				+0.2
107,585	-				+1.1
107,617	+				+2.0
107,630	-				-0.6
107,630	-				-3.0
107,633	+				-1.7
107,633	+				+1.0
107,633	+				+1.4
107,633	+				+2.2
107,633	+				-0.8
107,633	+				-0.9
107,633	+				+0.4
107,633	+				+1.0
107,633	+				+2.5
107,633	+				-0.4
107,633	+				+1.1
107,633	+				-1.9
107,634	-				-0.4
107,634	-				+1.0
107,634	-				+4.1
107,634	-				-0.4
107,634	-				-1.7
107,634	-				+0.2
107,634	-				+0.4
107,691	-		IAI47_19405	0.15	+1.6
107,691	-		IAI47_19405	0.15	-0.2
107,718	+		IAI47_19405	0.18	-0.5
107,718	+		IAI47_19405	0.18	+1.8
107,718	+		IAI47_19405	0.18	-0.2
107,718	+		IAI47_19405	0.18	-0.2
107,718	+		IAI47_19405	0.18	-2.8
107,718	+		IAI47_19405	0.18	-1.9
107,718	+		IAI47_19405	0.18	+0.9
107,718	+		IAI47_19405	0.18	+0.2
107,719	-		IAI47_19405	0.18	-0.2
107,719	-		IAI47_19405	0.18	-1.0
107,719	-		IAI47_19405	0.18	-0.0
107,783	+		IAI47_19405	0.24	-0.4
107,784	-		IAI47_19405	0.24	+1.0
107,813	-		IAI47_19405	0.27	-0.1
107,813	-		IAI47_19405	0.27	-0.8
107,813	-		IAI47_19405	0.27	+0.5
107,852	+		IAI47_19405	0.31	+2.5
107,852	+		IAI47_19405	0.31	-0.6
107,852	+		IAI47_19405	0.31	+0.4
107,873	-		IAI47_19405	0.34	-2.2
107,937	+		IAI47_19405	0.40	+3.1
107,937	+		IAI47_19405	0.40	-0.6
107,937	+		IAI47_19405	0.40	-1.3
107,968	+		IAI47_19405	0.43	-0.2
107,969	-		IAI47_19405	0.43	+0.8
108,062	+		IAI47_19405	0.53	-0.2
108,077	+		IAI47_19405	0.54	+0.2
108,077	+		IAI47_19405	0.54	+1.3
108,077	+		IAI47_19405	0.54	-1.0
108,077	+		IAI47_19405	0.54	-1.8
108,077	+		IAI47_19405	0.54	+1.7
108,077	+		IAI47_19405	0.54	-1.0
108,078	-		IAI47_19405	0.54	+1.8
108,078	-		IAI47_19405	0.54	-2.0
108,078	-		IAI47_19405	0.54	-1.7
108,078	-		IAI47_19405	0.54	-1.0
108,323	+		IAI47_19405	0.79	+3.3
108,323	+		IAI47_19405	0.79	-1.6
108,323	+		IAI47_19405	0.79	+0.3
108,323	+		IAI47_19405	0.79	+0.8
108,323	+		IAI47_19405	0.79	+0.2
108,323	+		IAI47_19405	0.79	+0.8
108,323	+		IAI47_19405	0.79	-1.1
108,323	+		IAI47_19405	0.79	-0.4
108,323	+		IAI47_19405	0.79	+0.2
108,324	-		IAI47_19405	0.79	+0.9
108,324	-		IAI47_19405	0.79	+0.3
108,324	-		IAI47_19405	0.79	-0.4
108,324	-		IAI47_19405	0.79	+4.0
108,324	-		IAI47_19405	0.79	-1.4
108,324	-		IAI47_19405	0.79	-1.4
108,324	-		IAI47_19405	0.79	-0.3
108,325	+		IAI47_19405	0.79	+0.4
108,331	+		IAI47_19405	0.80	-1.9
108,332	-		IAI47_19405	0.80	-1.3
108,487	+				+1.1
108,488	-				+0.2
108,556	-				+3.1
108,561	+				-0.2
108,561	+				-0.4
108,561	+				+0.7
108,561	+				-0.1
108,561	+				-0.9
108,561	+				+0.3
108,562	-				+1.2
108,562	-				+1.5
108,562	-				+1.8
108,608	+				-1.6
108,608	+				+1.8
108,609	-				+0.4
108,648	+		IAI47_19410	0.12	-1.4
108,677	+		IAI47_19410	0.15	-1.9
108,678	-		IAI47_19410	0.15	-0.2
108,678	-		IAI47_19410	0.15	+2.4
108,678	-		IAI47_19410	0.15	+0.0
108,680	+		IAI47_19410	0.15	+1.6
108,680	+		IAI47_19410	0.15	+1.2
108,680	+		IAI47_19410	0.15	-0.2
108,680	+		IAI47_19410	0.15	+0.8
108,680	+		IAI47_19410	0.15	-1.6
108,681	-		IAI47_19410	0.15	+3.9
108,681	-		IAI47_19410	0.15	-0.6
108,681	-		IAI47_19410	0.15	+0.1
108,681	-		IAI47_19410	0.15	-0.7
108,699	+		IAI47_19410	0.17	+5.0
108,715	+		IAI47_19410	0.18	+1.4
108,715	+		IAI47_19410	0.18	-0.0
108,716	-		IAI47_19410	0.18	-1.2
108,769	+		IAI47_19410	0.23	+0.8
108,770	-		IAI47_19410	0.23	-0.7
108,770	-		IAI47_19410	0.23	+1.0
108,770	-		IAI47_19410	0.23	+0.2
108,866	-		IAI47_19410	0.32	+1.8
108,873	+		IAI47_19410	0.33	-1.2
108,873	+		IAI47_19410	0.33	-1.8
108,874	-		IAI47_19410	0.33	-0.3
108,948	-		IAI47_19410	0.40	+0.8
109,111	-		IAI47_19410	0.54	+0.4
109,111	-		IAI47_19410	0.54	+0.8
109,120	+		IAI47_19410	0.55	-0.8
109,120	+		IAI47_19410	0.55	-0.0
109,151	+		IAI47_19410	0.58	-0.6
109,152	-		IAI47_19410	0.58	+0.8
109,152	-		IAI47_19410	0.58	-1.7
109,163	+		IAI47_19410	0.59	-1.9
109,163	+		IAI47_19410	0.59	-1.6
109,163	+		IAI47_19410	0.59	-2.4
109,164	-		IAI47_19410	0.59	+2.8
109,190	+		IAI47_19410	0.62	+1.8
109,257	-		IAI47_19410	0.68	-0.2
109,373	-		IAI47_19410	0.78	-0.7
109,373	-		IAI47_19410	0.78	+1.0
109,426	-		IAI47_19410	0.83	-0.2
109,426	-		IAI47_19410	0.83	+1.6
109,456	+		IAI47_19410	0.86	+0.8
109,457	-		IAI47_19410	0.86	+0.7
109,457	-		IAI47_19410	0.86	+0.4
109,526	-				-2.0
109,526	-				+5.9
109,526	-				-2.1
109,549	+				+2.0
109,550	-				-1.7
109,564	+				+0.8
109,568	-				+2.4
109,589	+				+1.8
109,665	+				-0.3
109,723	+				-2.8
109,723	+				+0.1
109,723	+				+0.9
109,723	+				+0.8
109,723	+				+0.1
109,723	+				+0.8
109,724	-				+2.4
109,724	-				-1.2
109,724	-				-2.8
109,724	-				-1.8
109,724	-				+1.9
109,726	+				-0.3
109,727	-				+0.8
109,727	-				+2.2
109,746	-				+0.6
109,748	+				-0.2
109,748	+				+1.4
109,748	+				-0.6
109,748	+				-0.2
109,749	-				-1.4
109,749	-				-1.9
109,749	-				-1.6
109,749	-				+2.4
109,749	-				-0.6
109,822	+				+1.4
109,823	-				-0.2
109,823	-				+1.9
109,823	-				+1.0
109,823	-				-1.2
109,873	+		IAI47_19415	0.11	-2.4
109,873	+		IAI47_19415	0.11	-0.8
109,873	+		IAI47_19415	0.11	-0.2
109,940	-		IAI47_19415	0.14	-0.4
109,940	-		IAI47_19415	0.14	-0.8
109,997	+		IAI47_19415	0.17	-0.9
110,029	+		IAI47_19415	0.18	-1.1
110,029	+		IAI47_19415	0.18	+1.7
110,029	+		IAI47_19415	0.18	-1.2
110,029	+		IAI47_19415	0.18	-1.3
110,029	+		IAI47_19415	0.18	-0.1
110,029	+		IAI47_19415	0.18	+0.2
110,029	+		IAI47_19415	0.18	-1.4
110,029	+		IAI47_19415	0.18	+0.3
110,029	+		IAI47_19415	0.18	-2.9
110,030	-		IAI47_19415	0.18	-1.0
110,030	-		IAI47_19415	0.18	+0.6
110,030	-		IAI47_19415	0.18	-1.8
110,030	-		IAI47_19415	0.18	+0.9
110,030	-		IAI47_19415	0.18	-0.2
110,030	-		IAI47_19415	0.18	-1.2
110,035	+		IAI47_19415	0.18	-1.0
110,035	+		IAI47_19415	0.18	+0.2
110,035	+		IAI47_19415	0.18	-0.3
110,035	+		IAI47_19415	0.18	+0.4
110,035	+		IAI47_19415	0.18	-1.0
110,035	+		IAI47_19415	0.18	-1.3
110,035	+		IAI47_19415	0.18	-1.2
110,036	-		IAI47_19415	0.18	-0.8
110,036	-		IAI47_19415	0.18	+0.6
110,036	-		IAI47_19415	0.18	-1.8
110,108	+		IAI47_19415	0.22	-1.6
110,109	-		IAI47_19415	0.22	+2.8
110,109	-		IAI47_19415	0.22	-0.8
110,109	-		IAI47_19415	0.22	+0.8
110,133	-		IAI47_19415	0.23	+0.4
110,133	-		IAI47_19415	0.23	+0.2
110,135	+		IAI47_19415	0.23	+1.8
110,136	-		IAI47_19415	0.23	-1.6
110,136	-		IAI47_19415	0.23	-0.3
110,136	-		IAI47_19415	0.23	-0.2
110,136	-		IAI47_19415	0.23	-0.4
110,308	+		IAI47_19415	0.31	-0.2
110,308	+		IAI47_19415	0.31	+0.1
110,308	+		IAI47_19415	0.31	-1.4
110,309	-		IAI47_19415	0.31	+1.2
110,309	-		IAI47_19415	0.31	-1.4
110,328	-		IAI47_19415	0.32	+1.0
110,335	+		IAI47_19415	0.33	+1.8
110,335	+		IAI47_19415	0.33	-1.4
110,336	-		IAI47_19415	0.33	+1.4
110,336	-		IAI47_19415	0.33	-1.6
110,336	-		IAI47_19415	0.33	-0.5
110,363	+		IAI47_19415	0.34	-1.0
110,363	+		IAI47_19415	0.34	-0.2
110,363	+		IAI47_19415	0.34	+0.9
110,363	+		IAI47_19415	0.34	-2.2
110,364	-		IAI47_19415	0.34	+0.8
110,364	-		IAI47_19415	0.34	+1.8
110,364	-		IAI47_19415	0.34	-2.2
110,425	+		IAI47_19415	0.37	+2.4
110,425	+		IAI47_19415	0.37	-0.2
110,426	-		IAI47_19415	0.37	-0.8
110,426	-		IAI47_19415	0.37	-1.4
110,486	+		IAI47_19415	0.40	+1.5
110,486	+		IAI47_19415	0.40	-0.2
110,491	+		IAI47_19415	0.40	+1.4
110,492	-				+0.8
110,492	-		IAI47_19415	0.40	-0.2
110,505	-		IAI47_19415	0.41	+1.8
110,522	+		IAI47_19415	0.41	-0.4
110,523	-		IAI47_19415	0.41	+0.3
110,526	-		IAI47_19415	0.42	-0.2
110,578	+		IAI47_19415	0.44	-2.1
110,578	+		IAI47_19415	0.44	+0.5
110,578	+		IAI47_19415	0.44	+1.1
110,578	+		IAI47_19415	0.44	+0.0
110,578	+		IAI47_19415	0.44	+1.3
110,579	-		IAI47_19415	0.44	-0.3
110,579	-		IAI47_19415	0.44	-1.8
110,593	+		IAI47_19415	0.45	-2.8
110,594	-		IAI47_19415	0.45	+3.4
110,594	-		IAI47_19415	0.45	+0.9