Strain Fitness in Pantoea sp. MT58 around IAI47_09070

Experiment: Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
1,915,647	-		IAI47_09065	0.49	+0.7
1,915,647	-				+0.3
1,915,687	+		IAI47_09065	0.52	-0.5
1,915,688	-		IAI47_09065	0.52	-0.5
1,915,688	-		IAI47_09065	0.52	+1.2
1,915,733	+		IAI47_09065	0.55	-2.1
1,915,733	+		IAI47_09065	0.55	+0.3
1,915,734	-		IAI47_09065	0.55	-0.7
1,915,741	-		IAI47_09065	0.55	+0.0
1,915,741	-		IAI47_09065	0.55	+2.1
1,915,744	-		IAI47_09065	0.55	-0.9
1,915,751	+		IAI47_09065	0.56	+2.7
1,915,832	+		IAI47_09065	0.61	+1.3
1,915,832	+		IAI47_09065	0.61	-0.5
1,915,833	-		IAI47_09065	0.61	+1.0
1,915,863	+		IAI47_09065	0.63	-0.5
1,915,863	+		IAI47_09065	0.63	+0.1
1,915,866	-		IAI47_09065	0.63	-0.4
1,915,940	+		IAI47_09065	0.67	+0.2
1,915,941	-		IAI47_09065	0.67	-0.7
1,915,941	-		IAI47_09065	0.67	+0.9
1,915,941	-		IAI47_09065	0.67	+0.3
1,916,003	+		IAI47_09065	0.71	+2.0
1,916,003	+		IAI47_09065	0.71	+1.1
1,916,004	-		IAI47_09065	0.71	-2.6
1,916,004	-		IAI47_09065	0.71	-0.3
1,916,004	-		IAI47_09065	0.71	-0.5
1,916,013	+		IAI47_09065	0.72	+0.5
1,916,013	+		IAI47_09065	0.72	-1.7
1,916,013	+		IAI47_09065	0.72	+0.3
1,916,013	+		IAI47_09065	0.72	+0.0
1,916,014	-		IAI47_09065	0.72	-0.9
1,916,014	-		IAI47_09065	0.72	+0.9
1,916,015	+		IAI47_09065	0.72	+0.9
1,916,015	+		IAI47_09065	0.72	+1.3
1,916,015	+		IAI47_09065	0.72	+2.3
1,916,015	+		IAI47_09065	0.72	-0.9
1,916,015	+		IAI47_09065	0.72	-1.7
1,916,016	-		IAI47_09065	0.72	+1.9
1,916,016	-		IAI47_09065	0.72	-1.0
1,916,016	-		IAI47_09065	0.72	+1.5
1,916,145	+		IAI47_09065	0.80	+2.6
1,916,146	-		IAI47_09065	0.80	+0.7
1,916,162	+		IAI47_09065	0.81	-1.6
1,916,162	+		IAI47_09065	0.81	+2.9
1,916,162	+		IAI47_09065	0.81	-1.1
1,916,163	-		IAI47_09065	0.81	-0.5
1,916,178	+		IAI47_09065	0.82	-1.5
1,916,178	+		IAI47_09065	0.82	-1.7
1,916,204	+		IAI47_09065	0.83	+0.9
1,916,204	+		IAI47_09065	0.83	+2.9
1,916,205	-		IAI47_09065	0.83	+0.3
1,916,205	-		IAI47_09065	0.83	+0.6
1,916,209	+		IAI47_09065	0.84	+1.5
1,916,210	-		IAI47_09065	0.84	-0.2
1,916,210	-		IAI47_09065	0.84	+0.1
1,916,210	-		IAI47_09065	0.84	-1.9
1,916,241	+		IAI47_09065	0.86	+2.2
1,916,241	+		IAI47_09065	0.86	-0.1
1,916,241	+		IAI47_09065	0.86	-1.3
1,916,242	-		IAI47_09065	0.86	-0.7
1,916,242	-		IAI47_09065	0.86	-0.5
1,916,316	+				+0.9
1,916,368	-				+0.7
1,916,370	+				+0.3
1,916,377	+				+0.1
1,916,377	+				-1.1
1,916,378	-				+0.5
1,916,378	-				-0.3
1,916,392	+				-0.9
1,916,414	+				-1.6
1,916,451	+				+0.4
1,916,451	+				+0.1
1,916,452	-				-1.7
1,916,452	-				+2.5
1,916,452	-				+0.5
1,916,452	-				-0.7
1,916,454	+				-2.0
1,916,454	+				+0.5
1,916,455	-				-1.1
1,916,455	-				-0.5
1,916,517	+				-1.9
1,916,517	+				-1.9
1,916,517	+				+0.9
1,916,517	+				-0.4
1,916,517	+				-0.1
1,916,517	+				-0.7
1,916,518	-				-2.2
1,916,518	-				+0.6
1,916,518	-				+1.2
1,916,518	-				+2.1
1,916,518	-				+0.9
1,916,547	+				-3.1
1,916,607	+				-0.9
1,916,610	+				+0.0
1,916,611	-				-0.1
1,916,611	-				-0.5
1,916,623	+				-1.6
1,916,623	+				+0.3
1,916,623	+				+1.1
1,916,623	+				-0.5
1,916,624	-				+0.7
1,916,624	-				+0.3
1,916,624	-				+0.9
1,916,624	-				-0.1
1,916,624	-				-1.8
1,916,626	+				-1.9
1,916,626	+				-0.8
1,916,626	+				+0.9
1,916,627	-				+3.0
1,916,627	-				-1.5
1,916,627	-				-0.6
1,916,657	-				-0.9
1,916,873	+		IAI47_09070	0.15	-0.8
1,916,891	-		IAI47_09070	0.16	+1.5
1,916,909	+		IAI47_09070	0.17	-0.9
1,916,952	-		IAI47_09070	0.20	-0.7
1,917,020	+		IAI47_09070	0.24	+1.9
1,917,054	+		IAI47_09070	0.26	+2.3
1,917,054	+		IAI47_09070	0.26	+0.6
1,917,054	+		IAI47_09070	0.26	+1.1
1,917,054	+		IAI47_09070	0.26	-1.1
1,917,055	-		IAI47_09070	0.26	+0.8
1,917,062	+		IAI47_09070	0.26	+2.9
1,917,062	+		IAI47_09070	0.26	+0.3
1,917,062	+		IAI47_09070	0.26	+0.3
1,917,063	-		IAI47_09070	0.27	+1.1
1,917,063	-		IAI47_09070	0.27	-1.5
1,917,172	-		IAI47_09070	0.33	+0.6
1,917,200	-		IAI47_09070	0.35	+0.3
1,917,200	-		IAI47_09070	0.35	-0.5
1,917,200	-		IAI47_09070	0.35	-0.3
1,917,213	+		IAI47_09070	0.36	-0.5
1,917,216	-		IAI47_09070	0.36	+0.1
1,917,284	+		IAI47_09070	0.40	-1.3
1,917,285	-		IAI47_09070	0.40	+0.4
1,917,285	-		IAI47_09070	0.40	-1.1
1,917,314	+		IAI47_09070	0.42	+1.9
1,917,314	+		IAI47_09070	0.42	+0.2
1,917,314	+		IAI47_09070	0.42	+0.5
1,917,330	-		IAI47_09070	0.43	+1.9
1,917,339	+		IAI47_09070	0.43	+3.9
1,917,340	-		IAI47_09070	0.43	-0.9
1,917,417	+		IAI47_09070	0.48	+2.5
1,917,417	+		IAI47_09070	0.48	+1.9
1,917,418	-		IAI47_09070	0.48	-0.7
1,917,447	+		IAI47_09070	0.50	-0.0
1,917,447	+		IAI47_09070	0.50	+2.9
1,917,448	-		IAI47_09070	0.50	-0.1
1,917,448	-		IAI47_09070	0.50	+1.5
1,917,448	-		IAI47_09070	0.50	+0.4
1,917,448	-		IAI47_09070	0.50	-1.1
1,917,519	+		IAI47_09070	0.54	-0.4
1,917,520	-		IAI47_09070	0.54	-0.8
1,917,520	-		IAI47_09070	0.54	+1.1
1,917,520	-		IAI47_09070	0.54	-1.2
1,917,531	+		IAI47_09070	0.55	-0.5
1,917,531	+		IAI47_09070	0.55	+0.3
1,917,531	+		IAI47_09070	0.55	-0.9
1,917,531	+		IAI47_09070	0.55	+1.5
1,917,531	+		IAI47_09070	0.55	+0.9
1,917,531	+		IAI47_09070	0.55	-0.6
1,917,531	+		IAI47_09070	0.55	-1.6
1,917,532	-		IAI47_09070	0.55	-1.6
1,917,532	-		IAI47_09070	0.55	-0.1
1,917,532	-		IAI47_09070	0.55	+2.9
1,917,532	-		IAI47_09070	0.55	+0.3
1,917,532	-		IAI47_09070	0.55	+2.4
1,917,532	-		IAI47_09070	0.55	-1.3
1,917,532	-		IAI47_09070	0.55	+2.3
1,917,534	+		IAI47_09070	0.55	-2.2
1,917,535	-		IAI47_09070	0.55	+0.3
1,917,535	-		IAI47_09070	0.55	+1.2
1,917,535	-		IAI47_09070	0.55	+0.9
1,917,535	-		IAI47_09070	0.55	+1.3
1,917,538	-		IAI47_09070	0.55	+0.1
1,917,538	-		IAI47_09070	0.55	+4.4
1,917,657	+		IAI47_09070	0.63	-0.1
1,917,658	-		IAI47_09070	0.63	+0.3
1,917,663	+		IAI47_09070	0.63	-0.6
1,917,663	+		IAI47_09070	0.63	+0.9
1,917,664	-		IAI47_09070	0.63	+1.9
1,917,664	-		IAI47_09070	0.63	+0.6
1,917,664	-		IAI47_09070	0.63	+2.1
1,917,693	-		IAI47_09070	0.65	-0.5
1,917,735	-		IAI47_09070	0.67	-0.1
1,917,735	-		IAI47_09070	0.67	+0.1
1,917,772	-		IAI47_09070	0.70	-0.5
1,917,772	-		IAI47_09070	0.70	-1.5
1,917,774	-		IAI47_09070	0.70	-0.3
1,917,797	+		IAI47_09070	0.71	-0.7
1,917,807	+		IAI47_09070	0.72	-1.5
1,917,807	+		IAI47_09070	0.72	+0.3
1,917,807	+		IAI47_09070	0.72	+1.7
1,917,807	+		IAI47_09070	0.72	+0.1
1,917,807	+		IAI47_09070	0.72	-2.4
1,917,807	+		IAI47_09070	0.72	-0.3
1,917,808	-		IAI47_09070	0.72	+2.1
1,917,808	-		IAI47_09070	0.72	+0.7
1,917,808	-		IAI47_09070	0.72	-0.2
1,917,808	-		IAI47_09070	0.72	+2.5
1,917,808	-		IAI47_09070	0.72	-1.7
1,917,809	+		IAI47_09070	0.72	+0.9
1,917,809	+		IAI47_09070	0.72	+0.5
1,917,809	+		IAI47_09070	0.72	+0.9
1,917,809	+		IAI47_09070	0.72	-0.5
1,917,809	+		IAI47_09070	0.72	-0.9
1,917,809	+		IAI47_09070	0.72	+1.9
1,917,809	+		IAI47_09070	0.72	+4.2
1,917,810	-		IAI47_09070	0.72	+1.3
1,917,810	-		IAI47_09070	0.72	-1.3
1,917,810	-		IAI47_09070	0.72	+0.6
1,917,810	-		IAI47_09070	0.72	-0.3
1,917,827	+		IAI47_09070	0.73	+4.2
1,917,827	+		IAI47_09070	0.73	-0.5
1,917,827	+		IAI47_09070	0.73	+0.1
1,917,827	+		IAI47_09070	0.73	-0.1
1,917,827	+		IAI47_09070	0.73	-2.5
1,917,828	-		IAI47_09070	0.73	+1.8
1,917,828	-		IAI47_09070	0.73	+1.9
1,917,946	+		IAI47_09070	0.80	-0.3
1,917,947	-		IAI47_09070	0.80	-0.7
1,917,973	-		IAI47_09070	0.82	+1.0
1,917,975	-		IAI47_09070	0.82	-0.1
1,918,010	+		IAI47_09070	0.84	-0.7
1,918,023	-		IAI47_09070	0.85	+2.3
1,918,023	-		IAI47_09070	0.85	+0.3
1,918,035	+		IAI47_09070	0.86	-1.8
1,918,036	-		IAI47_09070	0.86	-0.9
1,918,036	-		IAI47_09070	0.86	-1.8
1,918,037	+		IAI47_09070	0.86	-0.3
1,918,037	+		IAI47_09070	0.86	+0.9
1,918,038	-		IAI47_09070	0.86	-1.2
1,918,038	-		IAI47_09070	0.86	-2.5
1,918,038	-		IAI47_09070	0.86	+1.9
1,918,038	-		IAI47_09070	0.86	+2.7
1,918,038	-		IAI47_09070	0.86	+0.6
1,918,038	-		IAI47_09070	0.86	+2.5
1,918,076	+		IAI47_09070	0.88	-3.4
1,918,111	-				+1.2
1,918,136	+				-1.0
1,918,137	-				+1.1
1,918,161	+				-1.7
1,918,161	+				-0.1
1,918,161	+				-0.2
1,918,161	+				-1.0
1,918,164	+				+1.9
1,918,165	-				-2.8
1,918,165	-				-0.5
1,918,165	-				+1.2
1,918,167	+				+1.4
1,918,167	+				-1.5
1,918,168	-				-1.6
1,918,168	-				-0.4
1,918,168	-				+1.7
1,918,168	-				+0.3
1,918,171	+				+1.2
1,918,171	+				-0.1
1,918,172	-				-0.7
1,918,172	-				+4.0
1,918,175	+				-0.1
1,918,176	-				+0.4
1,918,194	+				+0.6
1,918,194	+				+0.2
1,918,194	+				-1.9
1,918,195	-				-0.5
1,918,195	-				-0.7
1,918,195	-				-1.7
1,918,195	-				-1.3
1,918,195	-				+0.2
1,918,195	-				-1.9
1,918,208	+				+0.7
1,918,251	+				-1.5
1,918,251	+				+1.1
1,918,251	+				+0.2
1,918,251	+				+2.6
1,918,251	+				+2.3
1,918,251	+				+3.4
1,918,251	+				+0.1
1,918,252	-				+4.7
1,918,252	-				-0.6
1,918,266	+				+0.4
1,918,269	+				-1.1
1,918,269	+				-1.1
1,918,270	-				+1.9
1,918,270	-				-0.1
1,918,282	-				-0.0
1,918,321	+				+0.2
1,918,321	+				-1.1
1,918,321	+				+0.5
1,918,321	+				+2.9
1,918,321	+				+0.7
1,918,321	+				-0.5
1,918,322	-				+0.8
1,918,322	-				+0.9
1,918,322	-				-0.7
1,918,322	-				-1.3
1,918,325	+				+0.4
1,918,325	+				-0.3
1,918,325	+				-0.8
1,918,325	+				-0.2
1,918,325	+				+1.9
1,918,325	+				-1.1
1,918,325	+				+1.5
1,918,325	+				+0.3
1,918,325	+				-0.1
1,918,325	+				+0.9
1,918,325	+				-1.6
1,918,325	+				+2.4
1,918,325	+				-1.3
1,918,326	-				+1.1
1,918,326	-				-2.8
1,918,326	-				-0.7
1,918,326	-				-2.8
1,918,326	-				+1.3
1,918,326	-				-1.0
1,918,326	-				-1.3
1,918,326	-				+0.9
1,918,326	-				+1.7
1,918,326	-				+0.1
1,918,326	-				+1.2
1,918,326	-				+0.3
1,918,326	-				-0.9
1,918,326	-				+0.3
1,918,327	+				+1.0
1,918,327	+				-1.8
1,918,327	+				-1.5
1,918,328	-				-2.3
1,918,351	-				+1.5
1,918,351	-				-0.5
1,918,354	+				+2.6
1,918,435	+				+0.6
1,918,435	+				+0.9
1,918,436	-				+0.9
1,918,504	+		IAI47_09075	0.16	-2.1
1,918,505	-		IAI47_09075	0.16	+2.5
1,918,505	-		IAI47_09075	0.16	-1.1
1,918,517	+		IAI47_09075	0.17	+1.1
1,918,518	-		IAI47_09075	0.17	-0.7
1,918,518	-		IAI47_09075	0.17	+1.5
1,918,518	-		IAI47_09075	0.17	-0.2
1,918,547	+		IAI47_09075	0.20	+0.1
1,918,547	+		IAI47_09075	0.20	-0.6
1,918,547	+		IAI47_09075	0.20	-0.9
1,918,547	+		IAI47_09075	0.20	-0.6
1,918,547	+		IAI47_09075	0.20	-0.2
1,918,547	+		IAI47_09075	0.20	-0.1
1,918,547	+		IAI47_09075	0.20	-1.1
1,918,547	+		IAI47_09075	0.20	+0.3
1,918,547	+		IAI47_09075	0.20	-2.3
1,918,547	+		IAI47_09075	0.20	+0.3
1,918,548	-		IAI47_09075	0.20	-0.9
1,918,548	-		IAI47_09075	0.20	+2.2
1,918,548	-		IAI47_09075	0.20	+0.4
1,918,548	-		IAI47_09075	0.20	+1.5
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