Strain Fitness in Pantoea sp. MT58 around IAI47_00235

Experiment: Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
49,932	+				-1.5
49,938	+				-0.1
49,939	-				+0.2
49,939	-				+0.6
49,939	-				+0.4
50,028	+		IAI47_00230	0.17	+1.6
50,028	+		IAI47_00230	0.17	-2.1
50,028	+		IAI47_00230	0.17	-0.3
50,028	+		IAI47_00230	0.17	-0.3
50,029	-		IAI47_00230	0.17	-1.3
50,029	-		IAI47_00230	0.17	-1.5
50,029	-		IAI47_00230	0.17	+0.3
50,029	-		IAI47_00230	0.17	+0.4
50,029	-		IAI47_00230	0.17	-2.5
50,046	+		IAI47_00230	0.19	+1.5
50,046	+		IAI47_00230	0.19	+0.5
50,047	-		IAI47_00230	0.19	+0.6
50,072	+		IAI47_00230	0.21	+0.1
50,072	+		IAI47_00230	0.21	-1.3
50,072	+		IAI47_00230	0.21	+1.3
50,073	-		IAI47_00230	0.21	+0.3
50,073	-		IAI47_00230	0.21	+0.4
50,073	-		IAI47_00230	0.21	+2.1
50,073	-		IAI47_00230	0.21	+0.0
50,073	-		IAI47_00230	0.21	+0.1
50,085	+		IAI47_00230	0.23	-0.3
50,088	+		IAI47_00230	0.23	-0.4
50,088	+		IAI47_00230	0.23	-1.6
50,088	+		IAI47_00230	0.23	+0.4
50,088	+		IAI47_00230	0.23	-1.2
50,088	+		IAI47_00230	0.23	+0.3
50,088	+		IAI47_00230	0.23	-2.0
50,089	-		IAI47_00230	0.23	+0.6
50,089	-		IAI47_00230	0.23	-0.2
50,089	-		IAI47_00230	0.23	-3.1
50,089	-		IAI47_00230	0.23	+1.0
50,089	-		IAI47_00230	0.23	+0.5
50,164	-		IAI47_00230	0.31	-0.3
50,216	+		IAI47_00230	0.36	-0.3
50,216	+		IAI47_00230	0.36	+0.9
50,217	-		IAI47_00230	0.36	-2.8
50,279	+		IAI47_00230	0.43	-2.3
50,279	+		IAI47_00230	0.43	+1.3
50,279	+		IAI47_00230	0.43	+1.4
50,279	+		IAI47_00230	0.43	-0.2
50,280	-		IAI47_00230	0.43	+1.7
50,280	-		IAI47_00230	0.43	-0.3
50,280	-		IAI47_00230	0.43	+1.3
50,280	-		IAI47_00230	0.43	+0.6
50,280	-		IAI47_00230	0.43	+0.1
50,280	-		IAI47_00230	0.43	+4.3
50,322	+		IAI47_00230	0.47	-1.2
50,322	+		IAI47_00230	0.47	-0.9
50,457	+		IAI47_00230	0.61	-0.9
50,458	-		IAI47_00230	0.61	-0.3
50,484	+		IAI47_00230	0.64	-0.2
50,485	-		IAI47_00230	0.64	-1.2
50,568	+		IAI47_00230	0.73	-0.2
50,590	+		IAI47_00230	0.75	+1.3
50,590	+		IAI47_00230	0.75	+0.8
50,590	+		IAI47_00230	0.75	-1.7
50,590	+		IAI47_00230	0.75	+0.3
50,590	+		IAI47_00230	0.75	+1.3
50,591	-		IAI47_00230	0.75	-1.2
50,591	-		IAI47_00230	0.75	-0.8
50,591	-		IAI47_00230	0.75	-1.1
50,591	-		IAI47_00230	0.75	-1.7
50,591	-		IAI47_00230	0.75	-0.1
50,591	-		IAI47_00230	0.75	+1.7
50,591	-		IAI47_00230	0.75	+0.6
50,591	-		IAI47_00230	0.75	-1.7
50,591	-		IAI47_00230	0.75	-0.8
50,603	+		IAI47_00230	0.76	+2.2
50,603	+		IAI47_00230	0.76	-0.3
50,603	+		IAI47_00230	0.76	-1.3
50,603	+		IAI47_00230	0.76	-1.7
50,604	-		IAI47_00230	0.77	-1.7
50,604	-		IAI47_00230	0.77	+0.0
50,612	-		IAI47_00230	0.77	+1.7
50,718	+		IAI47_00230	0.88	-0.6
50,718	+		IAI47_00230	0.88	+0.3
50,718	+		IAI47_00230	0.88	-1.5
50,718	+		IAI47_00230	0.88	-0.8
50,719	-		IAI47_00230	0.88	+0.6
50,719	-		IAI47_00230	0.88	-0.3
50,719	-		IAI47_00230	0.88	+1.1
50,734	+				+0.2
50,735	-				+0.7
50,735	-				+4.1
50,740	+				-1.1
50,740	+				-0.8
50,740	+				-0.2
50,740	+				+0.4
50,740	+				-1.7
50,740	+				+0.1
50,740	+				+1.0
50,740	+				+0.6
50,740	+				-0.2
50,740	+				+1.0
50,740	+				+1.0
50,740	+				-1.3
50,740	+				+0.7
50,740	+				-0.3
50,741	-				-2.3
50,741	-				+2.7
50,741	-				+1.0
50,741	-				+1.9
50,741	-				-1.2
50,741	-				+0.6
50,741	-				-0.7
50,741	-				+1.6
50,829	+				+2.6
50,829	+				-1.5
50,829	+				-3.3
50,829	+				+1.6
50,829	+				-0.3
50,829	+				-0.3
50,829	+				-2.6
50,829	+				-0.1
50,830	-				-0.6
50,830	-				-0.3
50,830	-				+0.9
50,852	+				-1.9
50,852	+				+2.3
50,852	+				+1.0
50,853	-				+3.1
50,853	-				-0.3
50,917	+				-0.1
50,918	-				-2.3
50,918	-				+0.9
50,923	+				-1.1
50,923	+				-0.3
50,934	-				-1.0
50,934	-				-1.3
51,007	+				+0.3
51,008	-				-0.6
51,008	-				+0.9
51,008	-				+1.5
51,008	-				+0.8
51,008	-				+1.3
51,043	+		IAI47_00235	0.12	-0.7
51,043	+		IAI47_00235	0.12	+1.6
51,043	+		IAI47_00235	0.12	+0.6
51,043	+		IAI47_00235	0.12	+0.8
51,044	-		IAI47_00235	0.12	-0.5
51,066	+		IAI47_00235	0.14	-1.8
51,067	-		IAI47_00235	0.14	+0.5
51,067	-		IAI47_00235	0.14	+1.6
51,067	-		IAI47_00235	0.14	-0.2
51,101	+		IAI47_00235	0.18	-1.1
51,101	+		IAI47_00235	0.18	-3.3
51,101	+		IAI47_00235	0.18	-1.2
51,102	-		IAI47_00235	0.18	+1.5
51,102	-		IAI47_00235	0.18	+2.6
51,103	+		IAI47_00235	0.18	-3.2
51,103	+		IAI47_00235	0.18	+1.8
51,103	+		IAI47_00235	0.18	+2.2
51,104	-		IAI47_00235	0.18	+0.4
51,104	-		IAI47_00235	0.18	-0.7
51,104	-		IAI47_00235	0.18	-0.6
51,104	-		IAI47_00235	0.18	-0.3
51,104	-		IAI47_00235	0.18	+3.0
51,242	+		IAI47_00235	0.31	+1.4
51,242	+		IAI47_00235	0.31	+0.1
51,242	+		IAI47_00235	0.31	+1.3
51,268	+		IAI47_00235	0.34	+0.1
51,268	+		IAI47_00235	0.34	+1.9
51,269	-		IAI47_00235	0.34	-0.7
51,269	-		IAI47_00235	0.34	-0.6
51,269	-		IAI47_00235	0.34	-1.9
51,287	+		IAI47_00235	0.36	+2.9
51,287	+		IAI47_00235	0.36	-0.3
51,287	+		IAI47_00235	0.36	-1.9
51,287	+		IAI47_00235	0.36	+3.7
51,292	+		IAI47_00235	0.36	+0.9
51,292	+		IAI47_00235	0.36	+0.4
51,293	-		IAI47_00235	0.36	+1.0
51,293	-		IAI47_00235	0.36	+0.8
51,298	+		IAI47_00235	0.37	-1.0
51,298	+		IAI47_00235	0.37	+1.5
51,299	-		IAI47_00235	0.37	+0.6
51,299	-		IAI47_00235	0.37	+1.5
51,307	+		IAI47_00235	0.37	+1.1
51,308	-		IAI47_00235	0.38	+1.3
51,308	-		IAI47_00235	0.38	+1.1
51,362	+		IAI47_00235	0.43	-2.0
51,443	-		IAI47_00235	0.50	-0.8
51,443	-		IAI47_00235	0.50	-3.1
51,574	+		IAI47_00235	0.63	-0.4
51,574	+		IAI47_00235	0.63	+0.2
51,574	+		IAI47_00235	0.63	-0.4
51,574	+		IAI47_00235	0.63	+0.1
51,574	+		IAI47_00235	0.63	-0.3
51,574	+		IAI47_00235	0.63	-1.0
51,575	-		IAI47_00235	0.63	-2.4
51,575	-		IAI47_00235	0.63	-0.0
51,575	-		IAI47_00235	0.63	+1.6
51,575	-		IAI47_00235	0.63	-0.3
51,578	+		IAI47_00235	0.63	-2.9
51,578	+		IAI47_00235	0.63	-0.3
51,578	+		IAI47_00235	0.63	+2.1
51,579	-		IAI47_00235	0.64	-0.7
51,579	-		IAI47_00235	0.64	-1.4
51,635	+		IAI47_00235	0.69	-2.5
51,636	-		IAI47_00235	0.69	+2.3
51,636	-		IAI47_00235	0.69	+1.0
51,636	-		IAI47_00235	0.69	+2.5
51,645	+		IAI47_00235	0.70	+1.6
51,646	-		IAI47_00235	0.70	+0.2
51,646	-		IAI47_00235	0.70	+0.6
51,787	+		IAI47_00235	0.83	-1.4
51,787	+		IAI47_00235	0.83	+0.5
51,787	+		IAI47_00235	0.83	+1.9
51,788	-		IAI47_00235	0.84	+1.0
51,816	-		IAI47_00235	0.86	+0.2
51,817	+		IAI47_00235	0.86	+2.6
51,818	-		IAI47_00235	0.86	+0.7
51,907	-				+1.7
51,945	-				+1.2
51,945	-				-2.8
51,945	-				-0.4
51,945	-				+1.6
51,945	-				+1.4
51,945	-				-0.8
51,999	+				-0.5
51,999	+				+1.7
52,000	-				-1.3
52,000	-				-0.6
52,003	-				+1.1
52,003	-				-1.9
52,003	-				-0.3
52,033	+				-0.6
52,033	+				-0.3
52,033	+				+1.1
52,034	-				+3.8
52,034	-				+0.5
52,066	+				-0.8
52,067	-				-0.3
52,067	-				-0.3
52,075	+				+1.0
52,075	+				-2.1
52,075	+				+1.2
52,075	+				+3.8
52,075	+				-0.4
52,075	+				-2.5
52,075	+				-3.1
52,075	+				+0.4
52,075	+				+0.9
52,076	-				-2.1
52,076	-				-0.5
52,076	-				-1.7
52,076	-				+0.6
52,076	-				-0.4
52,076	-				-2.0
52,076	-				-0.9
52,076	-				+0.7
52,076	-				-2.2
52,077	+				+0.1
52,077	+				-2.4
52,077	+				+2.5
52,078	-				+1.5
52,078	-				+0.4
52,078	-				-1.1
52,078	-				+2.7
52,078	-				-0.8
52,078	-				-1.9
52,078	-				-0.1
52,078	-				-2.0
52,078	-				+1.7
52,078	-				-0.9
52,126	+				+0.4
52,126	+				-0.9
52,127	-				-0.9
52,127	-				+0.8
52,127	-				-2.9