Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3944

Experiment: Doxycycline hyclate 0.0001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGa0059261_3942 and Ga0059261_3943 overlap by 4 nucleotidesGa0059261_3943 and Ga0059261_3944 overlap by 10 nucleotidesGa0059261_3944 and Ga0059261_3945 overlap by 7 nucleotides Ga0059261_3942: Ga0059261_3942 - hypothetical protein, at 4,059,217 to 4,059,729 _3942 Ga0059261_3943: Ga0059261_3943 - Type II secretion system (T2SS), protein M subtype b, at 4,059,726 to 4,060,193 _3943 Ga0059261_3944: Ga0059261_3944 - hypothetical protein, at 4,060,184 to 4,060,636 _3944 Ga0059261_3945: Ga0059261_3945 - type II secretion system protein D, at 4,060,630 to 4,062,690 _3945 Position (kb) 4060 4061Strain fitness (log2 ratio) -1 0 1 2at 4059.958 kb on + strand, within Ga0059261_3943at 4060.260 kb on + strand, within Ga0059261_3944at 4060.260 kb on + strand, within Ga0059261_3944at 4060.260 kb on + strand, within Ga0059261_3944at 4060.260 kb on + strand, within Ga0059261_3944at 4060.349 kb on + strand, within Ga0059261_3944at 4060.349 kb on + strand, within Ga0059261_3944at 4060.349 kb on + strand, within Ga0059261_3944at 4060.349 kb on + strand, within Ga0059261_3944at 4060.349 kb on + strand, within Ga0059261_3944at 4060.350 kb on - strand, within Ga0059261_3944at 4060.350 kb on - strand, within Ga0059261_3944at 4060.733 kb on + strandat 4060.733 kb on + strandat 4060.733 kb on + strandat 4060.733 kb on + strandat 4060.733 kb on + strandat 4060.734 kb on - strandat 4060.734 kb on - strandat 4060.734 kb on - strandat 4060.734 kb on - strandat 4060.806 kb on + strandat 4060.806 kb on + strandat 4060.806 kb on + strandat 4060.807 kb on - strandat 4060.898 kb on + strand, within Ga0059261_3945at 4060.899 kb on - strand, within Ga0059261_3945at 4060.899 kb on - strandat 4061.123 kb on + strand, within Ga0059261_3945at 4061.123 kb on + strand, within Ga0059261_3945at 4061.123 kb on + strand, within Ga0059261_3945at 4061.308 kb on - strand, within Ga0059261_3945

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0001 mg/ml
remove
4,059,958 + Ga0059261_3943 0.50 +1.1
4,060,260 + Ga0059261_3944 0.17 +0.1
4,060,260 + Ga0059261_3944 0.17 +0.5
4,060,260 + Ga0059261_3944 0.17 +0.1
4,060,260 + Ga0059261_3944 0.17 +0.1
4,060,349 + Ga0059261_3944 0.36 +0.0
4,060,349 + Ga0059261_3944 0.36 +0.9
4,060,349 + Ga0059261_3944 0.36 +0.9
4,060,349 + Ga0059261_3944 0.36 +0.5
4,060,349 + Ga0059261_3944 0.36 +0.3
4,060,350 - Ga0059261_3944 0.37 -0.9
4,060,350 - Ga0059261_3944 0.37 +1.1
4,060,733 + -0.1
4,060,733 + -0.4
4,060,733 + +0.3
4,060,733 + -0.4
4,060,733 + +2.4
4,060,734 - +1.1
4,060,734 - -0.4
4,060,734 - +0.5
4,060,734 - -0.4
4,060,806 + -0.5
4,060,806 + +0.1
4,060,806 + +2.7
4,060,807 - -0.9
4,060,898 + Ga0059261_3945 0.13 -0.2
4,060,899 - Ga0059261_3945 0.13 -0.2
4,060,899 - +1.1
4,061,123 + Ga0059261_3945 0.24 +0.8
4,061,123 + Ga0059261_3945 0.24 +0.1
4,061,123 + Ga0059261_3945 0.24 +0.7
4,061,308 - Ga0059261_3945 0.33 +0.3

Or see this region's nucleotide sequence