Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3784

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
3,883,196	-				+0.8
3,883,294	+				-0.7
3,883,294	+				-0.3
3,883,294	+				-0.1
3,883,295	-				+0.1
3,883,295	-				+0.3
3,883,295	-				+1.1
3,883,301	+				-0.3
3,883,301	+				-0.1
3,883,301	+				-0.7
3,883,301	+				-0.0
3,883,301	+				-0.2
3,883,302	-				-0.9
3,883,302	-				-0.1
3,883,302	-				+0.5
3,883,376	+				+0.9
3,883,376	+				-0.0
3,883,376	+				+0.9
3,883,376	+				+0.4
3,883,376	+				+0.3
3,883,376	+				+0.3
3,883,376	+				-0.3
3,883,376	+				+0.4
3,883,376	+				+0.1
3,883,377	-				-0.3
3,883,377	-				+0.0
3,883,377	-				+0.1
3,883,377	-				+0.4
3,883,377	-				-0.6
3,883,377	-				+0.1
3,883,377	-				+0.4
3,883,377	-				+0.7
3,883,377	-				-0.6
3,883,377	-				+0.2
3,883,377	-				+0.0
3,883,386	-				-0.1
3,883,508	+		Ga0059261_3782	0.27	+0.1
3,883,508	+		Ga0059261_3782	0.27	-0.1
3,883,508	+		Ga0059261_3782	0.27	+0.1
3,883,508	+		Ga0059261_3782	0.27	+0.7
3,883,509	-		Ga0059261_3782	0.27	-0.7
3,883,509	-		Ga0059261_3782	0.27	-0.4
3,883,509	-		Ga0059261_3782	0.27	-0.8
3,883,509	-		Ga0059261_3782	0.27	+0.6
3,883,509	-		Ga0059261_3782	0.27	+0.9
3,883,509	-		Ga0059261_3782	0.27	+0.3
3,883,510	+		Ga0059261_3782	0.28	+0.8
3,883,517	+		Ga0059261_3782	0.29	-0.2
3,883,518	-		Ga0059261_3782	0.29	+0.9
3,883,518	-		Ga0059261_3782	0.29	-0.5
3,883,604	+		Ga0059261_3782	0.44	+0.5
3,883,604	+		Ga0059261_3782	0.44	-0.1
3,883,604	+		Ga0059261_3782	0.44	+0.2
3,883,605	-		Ga0059261_3782	0.44	+0.2
3,883,605	-		Ga0059261_3782	0.44	-0.1
3,883,605	-		Ga0059261_3782	0.44	-1.1
3,883,606	+		Ga0059261_3782	0.44	+0.2
3,883,606	+		Ga0059261_3782	0.44	-0.5
3,883,606	+		Ga0059261_3782	0.44	+0.7
3,883,606	+		Ga0059261_3782	0.44	+1.3
3,883,606	+		Ga0059261_3782	0.44	-0.3
3,883,606	+		Ga0059261_3782	0.44	+0.0
3,883,606	+		Ga0059261_3782	0.44	+0.8
3,883,606	+		Ga0059261_3782	0.44	+0.4
3,883,607	-		Ga0059261_3782	0.44	-0.1
3,883,607	-		Ga0059261_3782	0.44	+0.3
3,883,607	-		Ga0059261_3782	0.44	-0.3
3,883,607	-		Ga0059261_3782	0.44	+0.9
3,883,607	-		Ga0059261_3782	0.44	+0.7
3,883,691	+		Ga0059261_3782	0.58	-0.1
3,883,692	-		Ga0059261_3782	0.59	-0.2
3,883,906	+				-0.1
3,883,906	+				-0.7
3,883,907	-				-1.5
3,883,931	+				-0.5
3,883,952	+		Ga0059261_3783	0.13	+0.3
3,883,952	+		Ga0059261_3783	0.13	-0.7
3,883,953	-		Ga0059261_3783	0.14	+0.6
3,883,996	+		Ga0059261_3783	0.39	+0.4
3,883,996	+		Ga0059261_3783	0.39	+0.7
3,883,996	+		Ga0059261_3783	0.39	+1.3
3,883,996	+		Ga0059261_3783	0.39	+0.5
3,883,996	+				+2.1
3,883,996	+		Ga0059261_3783	0.39	-0.2
3,883,997	-		Ga0059261_3783	0.40	+1.0
3,883,997	-		Ga0059261_3783	0.40	+0.6
3,884,328	-				-0.2
3,884,328	-				+0.1
3,884,368	+		Ga0059261_3784	0.10	+0.7
3,884,368	+		Ga0059261_3784	0.10	-1.3
3,884,368	+		Ga0059261_3784	0.10	+0.4
3,884,368	+		Ga0059261_3784	0.10	+1.0
3,884,368	+		Ga0059261_3784	0.10	-0.6
3,884,369	-		Ga0059261_3784	0.10	-0.6
3,884,494	+		Ga0059261_3784	0.15	+0.5
3,884,494	+		Ga0059261_3784	0.15	+0.5
3,884,495	-		Ga0059261_3784	0.15	-0.0
3,884,495	-		Ga0059261_3784	0.15	-0.5
3,884,575	+		Ga0059261_3784	0.18	+1.8
3,884,575	+		Ga0059261_3784	0.18	+1.1
3,884,575	+		Ga0059261_3784	0.18	-0.1
3,884,575	+		Ga0059261_3784	0.18	+1.1
3,884,576	-		Ga0059261_3784	0.18	-0.2
3,884,576	-		Ga0059261_3784	0.18	-0.5
3,884,764	+		Ga0059261_3784	0.26	-0.2
3,884,764	+		Ga0059261_3784	0.26	+1.0
3,884,764	+		Ga0059261_3784	0.26	+0.7
3,884,764	+		Ga0059261_3784	0.26	-0.1
3,884,764	+		Ga0059261_3784	0.26	-0.0
3,884,765	-		Ga0059261_3784	0.26	-0.5
3,884,765	-		Ga0059261_3784	0.26	-0.1
3,884,765	-		Ga0059261_3784	0.26	+0.3
3,884,765	-		Ga0059261_3784	0.26	+0.5
3,884,765	-		Ga0059261_3784	0.26	-0.0
3,885,163	-		Ga0059261_3784	0.41	+0.3
3,885,275	+		Ga0059261_3784	0.45	+1.0
3,885,275	+		Ga0059261_3784	0.45	+0.8
3,885,275	+		Ga0059261_3784	0.45	+0.3
3,885,275	+		Ga0059261_3784	0.45	+0.6
3,885,275	+		Ga0059261_3784	0.45	+0.4
3,885,281	-		Ga0059261_3784	0.46	+0.6
3,885,296	+		Ga0059261_3784	0.46	+1.1
3,885,296	+		Ga0059261_3784	0.46	+0.5
3,885,296	+		Ga0059261_3784	0.46	+0.0
3,885,337	+				+1.7
3,885,338	-		Ga0059261_3784	0.48	+1.4
3,885,338	-		Ga0059261_3784	0.48	+1.3
3,885,412	+		Ga0059261_3784	0.51	+0.4
3,885,413	-				+1.1
3,885,413	-		Ga0059261_3784	0.51	+0.5
3,885,427	+		Ga0059261_3784	0.51	+0.1
3,885,428	-		Ga0059261_3784	0.51	-2.2
3,885,428	-		Ga0059261_3784	0.51	+0.4
3,885,428	-		Ga0059261_3784	0.51	+0.7
3,885,428	-		Ga0059261_3784	0.51	-0.4
3,885,935	+		Ga0059261_3784	0.71	-0.5
3,885,935	+		Ga0059261_3784	0.71	+0.7
3,885,985	+		Ga0059261_3784	0.73	+0.6
3,885,985	+		Ga0059261_3784	0.73	+1.5
3,885,985	+		Ga0059261_3784	0.73	+0.3
3,885,986	-		Ga0059261_3784	0.73	-0.1
3,885,986	-		Ga0059261_3784	0.73	+0.3
3,886,239	+		Ga0059261_3784	0.82	+0.3
3,886,239	+		Ga0059261_3784	0.82	+0.8
3,886,239	+		Ga0059261_3784	0.82	+0.3
3,886,239	+		Ga0059261_3784	0.82	+0.1
3,886,239	+		Ga0059261_3784	0.82	+1.3
3,886,240	-		Ga0059261_3784	0.82	-0.1
3,886,240	-		Ga0059261_3784	0.82	+0.4
3,886,240	-		Ga0059261_3784	0.82	+0.9
3,886,471	+				+1.3
3,886,597	+				+0.4
3,886,615	+				+0.8
3,886,615	+				+1.0
3,886,616	-				+0.1
3,886,616	-				-0.2
3,886,616	-				+0.5
3,886,657	+				+1.3
3,886,657	+				+0.5
3,886,657	+				-0.5
3,886,657	+				+1.7
3,886,657	+				+1.4
3,886,658	-				+0.2
3,886,658	-				+0.7
3,886,864	+		Ga0059261_3785	0.14	-1.0
3,886,864	+		Ga0059261_3785	0.14	-0.9
3,886,864	+		Ga0059261_3785	0.14	+0.4
3,886,864	+		Ga0059261_3785	0.14	-0.3
3,887,084	-		Ga0059261_3785	0.44	+0.1
3,887,126	+		Ga0059261_3785	0.49	-0.7
3,887,126	+		Ga0059261_3785	0.49	+1.3
3,887,126	+		Ga0059261_3785	0.49	+0.4
3,887,191	+		Ga0059261_3785	0.58	-1.0
3,887,192	-		Ga0059261_3785	0.58	+0.2
3,887,260	+		Ga0059261_3785	0.67	+0.1
3,887,260	+		Ga0059261_3785	0.67	-0.3
3,887,260	+		Ga0059261_3785	0.67	-0.6