Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3714

Experiment: Doxycycline hyclate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_3712 and Ga0059261_3713 are separated by 7 nucleotidesGa0059261_3713 and Ga0059261_3714 overlap by 8 nucleotidesGa0059261_3714 and Ga0059261_3715 are separated by 64 nucleotides Ga0059261_3712: Ga0059261_3712 - pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form, at 3,826,462 to 3,827,748 _3712 Ga0059261_3713: Ga0059261_3713 - hypothetical protein, at 3,827,756 to 3,827,968 _3713 Ga0059261_3714: Ga0059261_3714 - Acyl-CoA hydrolase, at 3,827,961 to 3,828,344 _3714 Ga0059261_3715: Ga0059261_3715 - dihydrolipoamide dehydrogenase, at 3,828,409 to 3,829,809 _3715 Position (kb) 3827 3828 3829Strain fitness (log2 ratio) -1 0 1at 3828.033 kb on + strand, within Ga0059261_3714at 3828.033 kb on + strand, within Ga0059261_3714at 3828.033 kb on + strand, within Ga0059261_3714at 3828.033 kb on + strand, within Ga0059261_3714at 3828.034 kb on - strand, within Ga0059261_3714at 3828.186 kb on + strand, within Ga0059261_3714at 3828.293 kb on + strand, within Ga0059261_3714at 3828.293 kb on + strand, within Ga0059261_3714at 3828.367 kb on + strandat 3828.367 kb on + strandat 3828.367 kb on + strandat 3828.367 kb on + strandat 3828.367 kb on + strandat 3828.367 kb on + strandat 3828.367 kb on + strandat 3828.368 kb on - strandat 3828.371 kb on + strandat 3828.371 kb on + strandat 3828.371 kb on + strandat 3828.371 kb on + strandat 3828.371 kb on + strandat 3828.371 kb on + strandat 3828.401 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0001 mg/ml
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3,828,033 + Ga0059261_3714 0.19 +0.9
3,828,033 + Ga0059261_3714 0.19 +0.1
3,828,033 + Ga0059261_3714 0.19 +0.8
3,828,033 + Ga0059261_3714 0.19 +0.0
3,828,034 - Ga0059261_3714 0.19 +0.1
3,828,186 + Ga0059261_3714 0.59 +0.5
3,828,293 + Ga0059261_3714 0.86 +0.8
3,828,293 + Ga0059261_3714 0.86 -0.3
3,828,367 + -0.7
3,828,367 + +0.1
3,828,367 + -1.0
3,828,367 + +0.5
3,828,367 + -0.7
3,828,367 + -0.3
3,828,367 + -0.1
3,828,368 - -1.5
3,828,371 + -0.5
3,828,371 + +0.3
3,828,371 + +0.1
3,828,371 + -0.2
3,828,371 + -0.7
3,828,371 + -0.3
3,828,401 + +0.1

Or see this region's nucleotide sequence