Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3304

Experiment: Doxycycline hyclate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_3303 and Ga0059261_3304 are separated by 133 nucleotidesGa0059261_3304 and Ga0059261_3305 overlap by 4 nucleotidesGa0059261_3305 and Ga0059261_3306 are separated by 19 nucleotidesGa0059261_3306 and Ga0059261_3307 overlap by 4 nucleotides Ga0059261_3303: Ga0059261_3303 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 3,430,441 to 3,431,385 _3303 Ga0059261_3304: Ga0059261_3304 - transcriptional regulator, ArsR family, at 3,431,519 to 3,431,842 _3304 Ga0059261_3305: Ga0059261_3305 - Uncharacterized conserved protein, at 3,431,839 to 3,432,246 _3305 Ga0059261_3306: Ga0059261_3306 - hypothetical protein, at 3,432,266 to 3,432,472 _3306 Ga0059261_3307: Ga0059261_3307 - Uncharacterized conserved protein, at 3,432,469 to 3,432,876 _3307 Position (kb) 3431 3432Strain fitness (log2 ratio) -2 -1 0 1 2at 3430.640 kb on + strand, within Ga0059261_3303at 3430.641 kb on - strand, within Ga0059261_3303at 3430.641 kb on - strand, within Ga0059261_3303at 3430.641 kb on - strand, within Ga0059261_3303at 3430.736 kb on + strand, within Ga0059261_3303at 3430.736 kb on + strand, within Ga0059261_3303at 3430.737 kb on - strand, within Ga0059261_3303at 3431.150 kb on - strand, within Ga0059261_3303at 3431.150 kb on - strand, within Ga0059261_3303at 3431.221 kb on - strand, within Ga0059261_3303at 3431.312 kb on + strandat 3431.312 kb on + strandat 3431.342 kb on - strandat 3431.461 kb on + strandat 3431.508 kb on - strandat 3431.508 kb on - strandat 3431.726 kb on + strand, within Ga0059261_3304at 3432.058 kb on + strand, within Ga0059261_3305at 3432.175 kb on + strand, within Ga0059261_3305at 3432.175 kb on + strand, within Ga0059261_3305at 3432.175 kb on + strand, within Ga0059261_3305at 3432.175 kb on + strand, within Ga0059261_3305at 3432.175 kb on + strand, within Ga0059261_3305at 3432.175 kb on + strand, within Ga0059261_3305at 3432.175 kb on + strand, within Ga0059261_3305at 3432.176 kb on - strandat 3432.176 kb on - strand, within Ga0059261_3305at 3432.176 kb on - strand, within Ga0059261_3305at 3432.291 kb on + strand, within Ga0059261_3306at 3432.292 kb on - strand, within Ga0059261_3306at 3432.383 kb on + strand, within Ga0059261_3306at 3432.383 kb on + strand, within Ga0059261_3306at 3432.384 kb on - strand, within Ga0059261_3306at 3432.384 kb on - strand, within Ga0059261_3306at 3432.384 kb on - strand, within Ga0059261_3306at 3432.386 kb on + strand, within Ga0059261_3306at 3432.386 kb on + strand, within Ga0059261_3306at 3432.386 kb on + strand, within Ga0059261_3306at 3432.386 kb on + strand, within Ga0059261_3306at 3432.386 kb on + strand, within Ga0059261_3306at 3432.386 kb on + strand, within Ga0059261_3306at 3432.386 kb on + strand, within Ga0059261_3306at 3432.386 kb on + strand, within Ga0059261_3306at 3432.387 kb on - strand, within Ga0059261_3306at 3432.387 kb on - strand, within Ga0059261_3306at 3432.387 kb on - strand, within Ga0059261_3306at 3432.387 kb on - strand, within Ga0059261_3306at 3432.387 kb on - strand, within Ga0059261_3306at 3432.387 kb on - strand, within Ga0059261_3306at 3432.431 kb on + strand, within Ga0059261_3306at 3432.431 kb on + strand, within Ga0059261_3306at 3432.431 kb on + strand, within Ga0059261_3306at 3432.431 kb on + strandat 3432.431 kb on + strand, within Ga0059261_3306at 3432.431 kb on + strand, within Ga0059261_3306at 3432.431 kb on + strand, within Ga0059261_3306at 3432.431 kb on + strand, within Ga0059261_3306at 3432.431 kb on + strand, within Ga0059261_3306at 3432.432 kb on - strand, within Ga0059261_3306at 3432.432 kb on - strand, within Ga0059261_3306at 3432.432 kb on - strand, within Ga0059261_3306at 3432.432 kb on - strand, within Ga0059261_3306at 3432.432 kb on - strand, within Ga0059261_3306at 3432.432 kb on - strand, within Ga0059261_3306at 3432.432 kb on - strand, within Ga0059261_3306at 3432.432 kb on - strand, within Ga0059261_3306at 3432.432 kb on - strand, within Ga0059261_3306at 3432.432 kb on - strand, within Ga0059261_3306at 3432.432 kb on - strand, within Ga0059261_3306at 3432.432 kb on - strand, within Ga0059261_3306at 3432.449 kb on + strand, within Ga0059261_3306at 3432.509 kb on + strandat 3432.509 kb on + strandat 3432.510 kb on - strand, within Ga0059261_3307at 3432.510 kb on - strand, within Ga0059261_3307at 3432.544 kb on + strand, within Ga0059261_3307at 3432.544 kb on + strand, within Ga0059261_3307at 3432.544 kb on + strand, within Ga0059261_3307at 3432.544 kb on + strand, within Ga0059261_3307at 3432.544 kb on + strand, within Ga0059261_3307at 3432.544 kb on + strand, within Ga0059261_3307at 3432.544 kb on + strand, within Ga0059261_3307at 3432.544 kb on + strand, within Ga0059261_3307at 3432.544 kb on + strand, within Ga0059261_3307at 3432.544 kb on + strand, within Ga0059261_3307at 3432.544 kb on + strand, within Ga0059261_3307at 3432.544 kb on + strand, within Ga0059261_3307at 3432.544 kb on + strand, within Ga0059261_3307at 3432.545 kb on - strand, within Ga0059261_3307at 3432.545 kb on - strand, within Ga0059261_3307at 3432.545 kb on - strand, within Ga0059261_3307at 3432.545 kb on - strand, within Ga0059261_3307at 3432.545 kb on - strand, within Ga0059261_3307at 3432.545 kb on - strand, within Ga0059261_3307at 3432.547 kb on - strand, within Ga0059261_3307at 3432.547 kb on - strand, within Ga0059261_3307at 3432.656 kb on - strand, within Ga0059261_3307at 3432.706 kb on + strand, within Ga0059261_3307at 3432.706 kb on + strand, within Ga0059261_3307at 3432.706 kb on + strand, within Ga0059261_3307at 3432.706 kb on + strand, within Ga0059261_3307at 3432.706 kb on + strand, within Ga0059261_3307at 3432.706 kb on + strand, within Ga0059261_3307at 3432.706 kb on + strand, within Ga0059261_3307at 3432.706 kb on + strand, within Ga0059261_3307at 3432.707 kb on - strand, within Ga0059261_3307at 3432.707 kb on - strand, within Ga0059261_3307at 3432.707 kb on - strand, within Ga0059261_3307at 3432.707 kb on - strand, within Ga0059261_3307at 3432.707 kb on - strand, within Ga0059261_3307at 3432.707 kb on - strand, within Ga0059261_3307at 3432.707 kb on - strand, within Ga0059261_3307at 3432.707 kb on - strand, within Ga0059261_3307at 3432.707 kb on - strand, within Ga0059261_3307at 3432.785 kb on - strand, within Ga0059261_3307at 3432.785 kb on - strand, within Ga0059261_3307at 3432.785 kb on - strand, within Ga0059261_3307

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0001 mg/ml
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3,430,640 + Ga0059261_3303 0.21 -0.6
3,430,641 - Ga0059261_3303 0.21 +1.0
3,430,641 - Ga0059261_3303 0.21 +1.1
3,430,641 - Ga0059261_3303 0.21 +0.6
3,430,736 + Ga0059261_3303 0.31 -0.3
3,430,736 + Ga0059261_3303 0.31 +0.9
3,430,737 - Ga0059261_3303 0.31 -0.2
3,431,150 - Ga0059261_3303 0.75 -0.2
3,431,150 - Ga0059261_3303 0.75 -0.2
3,431,221 - Ga0059261_3303 0.83 +0.0
3,431,312 + -0.3
3,431,312 + +0.4
3,431,342 - +0.5
3,431,461 + +0.6
3,431,508 - -0.1
3,431,508 - -0.1
3,431,726 + Ga0059261_3304 0.64 +0.3
3,432,058 + Ga0059261_3305 0.54 +0.3
3,432,175 + Ga0059261_3305 0.82 +0.2
3,432,175 + Ga0059261_3305 0.82 +0.2
3,432,175 + Ga0059261_3305 0.82 -0.6
3,432,175 + Ga0059261_3305 0.82 -1.2
3,432,175 + Ga0059261_3305 0.82 -1.0
3,432,175 + Ga0059261_3305 0.82 +0.3
3,432,175 + Ga0059261_3305 0.82 -0.8
3,432,176 - +0.5
3,432,176 - Ga0059261_3305 0.83 -0.6
3,432,176 - Ga0059261_3305 0.83 -0.2
3,432,291 + Ga0059261_3306 0.12 -0.3
3,432,292 - Ga0059261_3306 0.13 -0.5
3,432,383 + Ga0059261_3306 0.57 +0.4
3,432,383 + Ga0059261_3306 0.57 -0.0
3,432,384 - Ga0059261_3306 0.57 +0.8
3,432,384 - Ga0059261_3306 0.57 -1.0
3,432,384 - Ga0059261_3306 0.57 -0.5
3,432,386 + Ga0059261_3306 0.58 -0.3
3,432,386 + Ga0059261_3306 0.58 -0.1
3,432,386 + Ga0059261_3306 0.58 -0.2
3,432,386 + Ga0059261_3306 0.58 +0.4
3,432,386 + Ga0059261_3306 0.58 -1.3
3,432,386 + Ga0059261_3306 0.58 +0.3
3,432,386 + Ga0059261_3306 0.58 -0.4
3,432,386 + Ga0059261_3306 0.58 -0.3
3,432,387 - Ga0059261_3306 0.58 +1.0
3,432,387 - Ga0059261_3306 0.58 +0.2
3,432,387 - Ga0059261_3306 0.58 -0.4
3,432,387 - Ga0059261_3306 0.58 -0.5
3,432,387 - Ga0059261_3306 0.58 +0.8
3,432,387 - Ga0059261_3306 0.58 -0.8
3,432,431 + Ga0059261_3306 0.80 +0.0
3,432,431 + Ga0059261_3306 0.80 -0.0
3,432,431 + Ga0059261_3306 0.80 +0.5
3,432,431 + +0.5
3,432,431 + Ga0059261_3306 0.80 -0.0
3,432,431 + Ga0059261_3306 0.80 -1.1
3,432,431 + Ga0059261_3306 0.80 -1.2
3,432,431 + Ga0059261_3306 0.80 +0.3
3,432,431 + Ga0059261_3306 0.80 -1.3
3,432,432 - Ga0059261_3306 0.80 -0.2
3,432,432 - Ga0059261_3306 0.80 +0.5
3,432,432 - Ga0059261_3306 0.80 +1.5
3,432,432 - Ga0059261_3306 0.80 -0.4
3,432,432 - Ga0059261_3306 0.80 -0.3
3,432,432 - Ga0059261_3306 0.80 +0.3
3,432,432 - Ga0059261_3306 0.80 -0.1
3,432,432 - Ga0059261_3306 0.80 -2.0
3,432,432 - Ga0059261_3306 0.80 -0.3
3,432,432 - Ga0059261_3306 0.80 -0.5
3,432,432 - Ga0059261_3306 0.80 -0.5
3,432,432 - Ga0059261_3306 0.80 +0.1
3,432,449 + Ga0059261_3306 0.88 +1.8
3,432,509 + -0.0
3,432,509 + -0.1
3,432,510 - Ga0059261_3307 0.10 +0.3
3,432,510 - Ga0059261_3307 0.10 +0.3
3,432,544 + Ga0059261_3307 0.18 +0.1
3,432,544 + Ga0059261_3307 0.18 -0.3
3,432,544 + Ga0059261_3307 0.18 -0.3
3,432,544 + Ga0059261_3307 0.18 -0.7
3,432,544 + Ga0059261_3307 0.18 -1.4
3,432,544 + Ga0059261_3307 0.18 -0.3
3,432,544 + Ga0059261_3307 0.18 -1.0
3,432,544 + Ga0059261_3307 0.18 +0.2
3,432,544 + Ga0059261_3307 0.18 -0.4
3,432,544 + Ga0059261_3307 0.18 +0.3
3,432,544 + Ga0059261_3307 0.18 -0.7
3,432,544 + Ga0059261_3307 0.18 -0.7
3,432,544 + Ga0059261_3307 0.18 +1.2
3,432,545 - Ga0059261_3307 0.19 -1.0
3,432,545 - Ga0059261_3307 0.19 -0.2
3,432,545 - Ga0059261_3307 0.19 -0.6
3,432,545 - Ga0059261_3307 0.19 +0.3
3,432,545 - Ga0059261_3307 0.19 -1.5
3,432,545 - Ga0059261_3307 0.19 +0.0
3,432,547 - Ga0059261_3307 0.19 +0.7
3,432,547 - Ga0059261_3307 0.19 +0.8
3,432,656 - Ga0059261_3307 0.46 +0.5
3,432,706 + Ga0059261_3307 0.58 +0.4
3,432,706 + Ga0059261_3307 0.58 +0.1
3,432,706 + Ga0059261_3307 0.58 +0.1
3,432,706 + Ga0059261_3307 0.58 -0.3
3,432,706 + Ga0059261_3307 0.58 +0.3
3,432,706 + Ga0059261_3307 0.58 +0.2
3,432,706 + Ga0059261_3307 0.58 -0.6
3,432,706 + Ga0059261_3307 0.58 -0.4
3,432,707 - Ga0059261_3307 0.58 -1.1
3,432,707 - Ga0059261_3307 0.58 -0.5
3,432,707 - Ga0059261_3307 0.58 -0.4
3,432,707 - Ga0059261_3307 0.58 -0.5
3,432,707 - Ga0059261_3307 0.58 -0.3
3,432,707 - Ga0059261_3307 0.58 +0.0
3,432,707 - Ga0059261_3307 0.58 -0.2
3,432,707 - Ga0059261_3307 0.58 -1.3
3,432,707 - Ga0059261_3307 0.58 -0.5
3,432,785 - Ga0059261_3307 0.77 -0.8
3,432,785 - Ga0059261_3307 0.77 -0.4
3,432,785 - Ga0059261_3307 0.77 +0.0

Or see this region's nucleotide sequence