Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_2471

Experiment: Doxycycline hyclate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_2470 and Ga0059261_2471 are separated by 147 nucleotidesGa0059261_2471 and Ga0059261_2472 are separated by 63 nucleotides Ga0059261_2470: Ga0059261_2470 - chorismate synthase (EC 4.2.3.5), at 2,553,075 to 2,554,145 _2470 Ga0059261_2471: Ga0059261_2471 - hypothetical protein, at 2,554,293 to 2,554,532 _2471 Ga0059261_2472: Ga0059261_2472 - Adenylosuccinate synthetase (EC 6.3.4.4), at 2,554,596 to 2,555,885 _2472 Position (kb) 2554 2555Strain fitness (log2 ratio) -1 0 1at 2554.277 kb on + strandat 2554.277 kb on + strandat 2554.278 kb on - strandat 2554.278 kb on - strandat 2554.278 kb on - strandat 2554.278 kb on - strandat 2554.278 kb on - strandat 2554.287 kb on + strandat 2554.287 kb on + strandat 2554.287 kb on + strandat 2554.287 kb on + strandat 2554.321 kb on + strand, within Ga0059261_2471at 2554.355 kb on + strand, within Ga0059261_2471at 2554.527 kb on + strandat 2554.527 kb on + strandat 2554.527 kb on + strandat 2554.527 kb on + strandat 2554.527 kb on + strandat 2554.527 kb on + strandat 2554.527 kb on + strandat 2554.527 kb on + strandat 2554.528 kb on - strandat 2554.528 kb on - strandat 2554.528 kb on - strandat 2554.528 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0001 mg/ml
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2,554,277 + -1.0
2,554,277 + +0.5
2,554,278 - +1.3
2,554,278 - -0.4
2,554,278 - -1.6
2,554,278 - +0.9
2,554,278 - -0.8
2,554,287 + -0.1
2,554,287 + +0.1
2,554,287 + +0.1
2,554,287 + +0.2
2,554,321 + Ga0059261_2471 0.12 -1.6
2,554,355 + Ga0059261_2471 0.26 -0.3
2,554,527 + -0.5
2,554,527 + +0.1
2,554,527 + +0.3
2,554,527 + +0.3
2,554,527 + -0.7
2,554,527 + -0.3
2,554,527 + -0.0
2,554,527 + -0.0
2,554,528 - -0.1
2,554,528 - -1.4
2,554,528 - -0.5
2,554,528 - -0.2

Or see this region's nucleotide sequence