Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1868

Experiment: Doxycycline hyclate 0.0001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGa0059261_1866 and Ga0059261_1867 are separated by 86 nucleotidesGa0059261_1867 and Ga0059261_1868 overlap by 4 nucleotidesGa0059261_1868 and Ga0059261_1869 are separated by 8 nucleotidesGa0059261_1869 and Ga0059261_1870 are separated by 8 nucleotides Ga0059261_1866: Ga0059261_1866 - tRNA, at 1,978,578 to 1,978,668 _1866 Ga0059261_1867: Ga0059261_1867 - Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family, at 1,978,755 to 1,979,609 _1867 Ga0059261_1868: Ga0059261_1868 - ABC-type uncharacterized transport system, auxiliary component, at 1,979,606 to 1,980,214 _1868 Ga0059261_1869: Ga0059261_1869 - ABC-type transport system involved in resistance to organic solvents, periplasmic component, at 1,980,223 to 1,981,194 _1869 Ga0059261_1870: Ga0059261_1870 - ABC-type transport system involved in resistance to organic solvents, ATPase component, at 1,981,203 to 1,982,024 _1870 Position (kb) 1979 1980 1981Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1978.896 kb on + strand, within Ga0059261_1867at 1978.896 kb on + strand, within Ga0059261_1867at 1978.896 kb on + strand, within Ga0059261_1867at 1978.896 kb on + strand, within Ga0059261_1867at 1978.896 kb on + strand, within Ga0059261_1867at 1978.896 kb on + strand, within Ga0059261_1867at 1978.897 kb on - strand, within Ga0059261_1867at 1978.897 kb on - strand, within Ga0059261_1867at 1978.897 kb on - strand, within Ga0059261_1867at 1978.897 kb on - strand, within Ga0059261_1867at 1978.897 kb on - strand, within Ga0059261_1867at 1978.897 kb on - strand, within Ga0059261_1867at 1978.897 kb on - strand, within Ga0059261_1867at 1978.898 kb on + strand, within Ga0059261_1867at 1978.898 kb on + strand, within Ga0059261_1867at 1978.899 kb on - strand, within Ga0059261_1867at 1978.899 kb on - strand, within Ga0059261_1867at 1978.917 kb on + strand, within Ga0059261_1867at 1978.918 kb on - strand, within Ga0059261_1867at 1978.918 kb on - strand, within Ga0059261_1867at 1978.918 kb on - strand, within Ga0059261_1867at 1978.987 kb on - strand, within Ga0059261_1867at 1979.004 kb on + strand, within Ga0059261_1867at 1979.004 kb on + strand, within Ga0059261_1867at 1979.004 kb on + strand, within Ga0059261_1867at 1979.004 kb on + strand, within Ga0059261_1867at 1979.004 kb on + strand, within Ga0059261_1867at 1979.004 kb on + strand, within Ga0059261_1867at 1979.004 kb on + strand, within Ga0059261_1867at 1979.004 kb on + strand, within Ga0059261_1867at 1979.004 kb on + strand, within Ga0059261_1867at 1979.004 kb on + strand, within Ga0059261_1867at 1979.005 kb on - strand, within Ga0059261_1867at 1979.005 kb on - strand, within Ga0059261_1867at 1979.005 kb on - strand, within Ga0059261_1867at 1979.005 kb on - strand, within Ga0059261_1867at 1979.005 kb on - strand, within Ga0059261_1867at 1979.005 kb on - strand, within Ga0059261_1867at 1979.005 kb on - strand, within Ga0059261_1867at 1979.005 kb on - strand, within Ga0059261_1867at 1979.005 kb on - strand, within Ga0059261_1867at 1979.005 kb on - strand, within Ga0059261_1867at 1979.005 kb on - strand, within Ga0059261_1867at 1979.005 kb on - strand, within Ga0059261_1867at 1979.005 kb on - strand, within Ga0059261_1867at 1979.005 kb on - strand, within Ga0059261_1867at 1979.079 kb on + strand, within Ga0059261_1867at 1979.079 kb on + strand, within Ga0059261_1867at 1979.079 kb on + strand, within Ga0059261_1867at 1979.094 kb on + strand, within Ga0059261_1867at 1979.094 kb on + strand, within Ga0059261_1867at 1979.094 kb on + strand, within Ga0059261_1867at 1979.094 kb on + strand, within Ga0059261_1867at 1979.095 kb on - strand, within Ga0059261_1867at 1979.095 kb on - strand, within Ga0059261_1867at 1979.095 kb on - strand, within Ga0059261_1867at 1979.095 kb on - strand, within Ga0059261_1867at 1979.095 kb on - strand, within Ga0059261_1867at 1979.095 kb on - strand, within Ga0059261_1867at 1979.095 kb on - strand, within Ga0059261_1867at 1979.095 kb on - strand, within Ga0059261_1867at 1979.114 kb on + strand, within Ga0059261_1867at 1979.130 kb on + strand, within Ga0059261_1867at 1979.131 kb on - strand, within Ga0059261_1867at 1979.208 kb on + strand, within Ga0059261_1867at 1979.208 kb on + strand, within Ga0059261_1867at 1979.208 kb on + strand, within Ga0059261_1867at 1979.208 kb on + strand, within Ga0059261_1867at 1979.208 kb on + strand, within Ga0059261_1867at 1979.208 kb on + strand, within Ga0059261_1867at 1979.209 kb on - strand, within Ga0059261_1867at 1979.209 kb on - strand, within Ga0059261_1867at 1979.209 kb on - strand, within Ga0059261_1867at 1979.209 kb on - strand, within Ga0059261_1867at 1979.209 kb on - strand, within Ga0059261_1867at 1979.246 kb on + strand, within Ga0059261_1867at 1979.247 kb on - strand, within Ga0059261_1867at 1979.267 kb on - strand, within Ga0059261_1867at 1979.268 kb on + strand, within Ga0059261_1867at 1979.268 kb on + strand, within Ga0059261_1867at 1979.268 kb on + strand, within Ga0059261_1867at 1979.268 kb on + strand, within Ga0059261_1867at 1979.268 kb on + strand, within Ga0059261_1867at 1979.269 kb on - strand, within Ga0059261_1867at 1979.269 kb on - strand, within Ga0059261_1867at 1979.269 kb on - strand, within Ga0059261_1867at 1979.269 kb on - strand, within Ga0059261_1867at 1979.269 kb on - strand, within Ga0059261_1867at 1979.269 kb on - strand, within Ga0059261_1867at 1979.269 kb on - strand, within Ga0059261_1867at 1979.269 kb on - strandat 1979.275 kb on + strand, within Ga0059261_1867at 1979.276 kb on - strand, within Ga0059261_1867at 1979.276 kb on - strand, within Ga0059261_1867at 1979.276 kb on - strand, within Ga0059261_1867at 1979.276 kb on - strand, within Ga0059261_1867at 1979.391 kb on + strand, within Ga0059261_1867at 1979.392 kb on - strand, within Ga0059261_1867at 1979.392 kb on - strand, within Ga0059261_1867at 1979.392 kb on - strand, within Ga0059261_1867at 1979.392 kb on - strand, within Ga0059261_1867at 1979.392 kb on - strand, within Ga0059261_1867at 1979.392 kb on - strand, within Ga0059261_1867at 1979.472 kb on - strand, within Ga0059261_1867at 1979.475 kb on + strand, within Ga0059261_1867at 1979.570 kb on + strandat 1979.570 kb on + strandat 1979.570 kb on + strandat 1979.985 kb on + strandat 1979.985 kb on + strand, within Ga0059261_1868at 1979.985 kb on + strand, within Ga0059261_1868at 1979.986 kb on - strand, within Ga0059261_1868at 1979.986 kb on - strand, within Ga0059261_1868at 1979.986 kb on - strand, within Ga0059261_1868at 1980.242 kb on + strandat 1980.242 kb on + strandat 1980.242 kb on + strandat 1980.242 kb on + strandat 1980.242 kb on + strandat 1980.243 kb on - strandat 1980.243 kb on - strandat 1980.243 kb on - strandat 1980.243 kb on - strandat 1980.636 kb on + strand, within Ga0059261_1869at 1980.637 kb on - strand, within Ga0059261_1869at 1980.909 kb on + strand, within Ga0059261_1869at 1980.909 kb on + strand, within Ga0059261_1869at 1980.910 kb on - strand, within Ga0059261_1869at 1980.912 kb on + strand, within Ga0059261_1869at 1980.912 kb on + strand, within Ga0059261_1869at 1980.912 kb on + strand, within Ga0059261_1869at 1980.912 kb on + strand, within Ga0059261_1869at 1980.913 kb on - strand, within Ga0059261_1869at 1981.079 kb on + strand, within Ga0059261_1869at 1981.079 kb on + strand, within Ga0059261_1869at 1981.080 kb on - strand, within Ga0059261_1869at 1981.080 kb on - strand, within Ga0059261_1869at 1981.153 kb on + strandat 1981.154 kb on - strandat 1981.154 kb on - strandat 1981.196 kb on + strandat 1981.196 kb on + strandat 1981.196 kb on + strandat 1981.196 kb on + strandat 1981.196 kb on + strandat 1981.196 kb on + strandat 1981.197 kb on - strandat 1981.197 kb on - strandat 1981.197 kb on - strandat 1981.197 kb on - strandat 1981.197 kb on - strandat 1981.197 kb on - strandat 1981.197 kb on - strandat 1981.197 kb on - strandat 1981.197 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0001 mg/ml
remove
1,978,896 + Ga0059261_1867 0.16 -0.3
1,978,896 + Ga0059261_1867 0.16 -0.6
1,978,896 + Ga0059261_1867 0.16 -1.6
1,978,896 + Ga0059261_1867 0.16 -0.6
1,978,896 + Ga0059261_1867 0.16 -0.7
1,978,896 + Ga0059261_1867 0.16 +0.6
1,978,897 - Ga0059261_1867 0.17 -0.2
1,978,897 - Ga0059261_1867 0.17 +0.6
1,978,897 - Ga0059261_1867 0.17 +0.5
1,978,897 - Ga0059261_1867 0.17 -0.3
1,978,897 - Ga0059261_1867 0.17 -0.3
1,978,897 - Ga0059261_1867 0.17 +0.7
1,978,897 - Ga0059261_1867 0.17 -0.1
1,978,898 + Ga0059261_1867 0.17 -0.3
1,978,898 + Ga0059261_1867 0.17 +0.7
1,978,899 - Ga0059261_1867 0.17 -0.4
1,978,899 - Ga0059261_1867 0.17 -0.4
1,978,917 + Ga0059261_1867 0.19 +0.4
1,978,918 - Ga0059261_1867 0.19 +0.4
1,978,918 - Ga0059261_1867 0.19 +0.3
1,978,918 - Ga0059261_1867 0.19 +0.8
1,978,987 - Ga0059261_1867 0.27 +1.0
1,979,004 + Ga0059261_1867 0.29 +0.2
1,979,004 + Ga0059261_1867 0.29 -0.3
1,979,004 + Ga0059261_1867 0.29 -0.4
1,979,004 + Ga0059261_1867 0.29 +0.5
1,979,004 + Ga0059261_1867 0.29 +0.1
1,979,004 + Ga0059261_1867 0.29 +0.2
1,979,004 + Ga0059261_1867 0.29 +0.1
1,979,004 + Ga0059261_1867 0.29 +0.6
1,979,004 + Ga0059261_1867 0.29 -0.4
1,979,004 + Ga0059261_1867 0.29 -0.4
1,979,005 - Ga0059261_1867 0.29 +0.3
1,979,005 - Ga0059261_1867 0.29 +0.3
1,979,005 - Ga0059261_1867 0.29 +1.1
1,979,005 - Ga0059261_1867 0.29 +0.9
1,979,005 - Ga0059261_1867 0.29 -0.2
1,979,005 - Ga0059261_1867 0.29 -0.2
1,979,005 - Ga0059261_1867 0.29 -0.8
1,979,005 - Ga0059261_1867 0.29 +0.0
1,979,005 - Ga0059261_1867 0.29 -0.2
1,979,005 - Ga0059261_1867 0.29 +0.4
1,979,005 - Ga0059261_1867 0.29 +0.1
1,979,005 - Ga0059261_1867 0.29 +0.5
1,979,005 - Ga0059261_1867 0.29 +0.4
1,979,005 - Ga0059261_1867 0.29 -0.8
1,979,079 + Ga0059261_1867 0.38 -0.2
1,979,079 + Ga0059261_1867 0.38 +0.1
1,979,079 + Ga0059261_1867 0.38 +0.6
1,979,094 + Ga0059261_1867 0.40 -0.5
1,979,094 + Ga0059261_1867 0.40 -0.0
1,979,094 + Ga0059261_1867 0.40 +0.5
1,979,094 + Ga0059261_1867 0.40 -0.0
1,979,095 - Ga0059261_1867 0.40 +1.1
1,979,095 - Ga0059261_1867 0.40 +0.1
1,979,095 - Ga0059261_1867 0.40 -1.1
1,979,095 - Ga0059261_1867 0.40 +0.0
1,979,095 - Ga0059261_1867 0.40 -0.4
1,979,095 - Ga0059261_1867 0.40 +0.3
1,979,095 - Ga0059261_1867 0.40 +0.6
1,979,095 - Ga0059261_1867 0.40 +0.6
1,979,114 + Ga0059261_1867 0.42 -0.9
1,979,130 + Ga0059261_1867 0.44 +0.4
1,979,131 - Ga0059261_1867 0.44 +0.3
1,979,208 + Ga0059261_1867 0.53 -0.1
1,979,208 + Ga0059261_1867 0.53 +0.0
1,979,208 + Ga0059261_1867 0.53 +0.2
1,979,208 + Ga0059261_1867 0.53 -0.4
1,979,208 + Ga0059261_1867 0.53 +0.6
1,979,208 + Ga0059261_1867 0.53 -0.0
1,979,209 - Ga0059261_1867 0.53 -0.0
1,979,209 - Ga0059261_1867 0.53 -0.2
1,979,209 - Ga0059261_1867 0.53 -1.1
1,979,209 - Ga0059261_1867 0.53 +0.1
1,979,209 - Ga0059261_1867 0.53 +0.2
1,979,246 + Ga0059261_1867 0.57 -0.8
1,979,247 - Ga0059261_1867 0.58 +0.6
1,979,267 - Ga0059261_1867 0.60 +0.2
1,979,268 + Ga0059261_1867 0.60 +0.9
1,979,268 + Ga0059261_1867 0.60 +0.5
1,979,268 + Ga0059261_1867 0.60 +0.1
1,979,268 + Ga0059261_1867 0.60 -1.0
1,979,268 + Ga0059261_1867 0.60 -0.1
1,979,269 - Ga0059261_1867 0.60 +0.0
1,979,269 - Ga0059261_1867 0.60 -0.6
1,979,269 - Ga0059261_1867 0.60 -0.2
1,979,269 - Ga0059261_1867 0.60 +0.3
1,979,269 - Ga0059261_1867 0.60 +0.2
1,979,269 - Ga0059261_1867 0.60 -0.9
1,979,269 - Ga0059261_1867 0.60 -0.8
1,979,269 - +0.4
1,979,275 + Ga0059261_1867 0.61 +0.3
1,979,276 - Ga0059261_1867 0.61 +0.2
1,979,276 - Ga0059261_1867 0.61 +0.1
1,979,276 - Ga0059261_1867 0.61 -1.0
1,979,276 - Ga0059261_1867 0.61 -0.3
1,979,391 + Ga0059261_1867 0.74 -0.1
1,979,392 - Ga0059261_1867 0.75 -0.2
1,979,392 - Ga0059261_1867 0.75 -0.6
1,979,392 - Ga0059261_1867 0.75 +0.1
1,979,392 - Ga0059261_1867 0.75 -0.2
1,979,392 - Ga0059261_1867 0.75 +0.5
1,979,392 - Ga0059261_1867 0.75 +0.4
1,979,472 - Ga0059261_1867 0.84 -1.8
1,979,475 + Ga0059261_1867 0.84 -1.1
1,979,570 + -0.0
1,979,570 + -0.2
1,979,570 + +0.3
1,979,985 + -0.6
1,979,985 + Ga0059261_1868 0.62 +1.4
1,979,985 + Ga0059261_1868 0.62 -0.3
1,979,986 - Ga0059261_1868 0.62 -1.0
1,979,986 - Ga0059261_1868 0.62 -1.5
1,979,986 - Ga0059261_1868 0.62 -1.4
1,980,242 + -3.9
1,980,242 + -1.0
1,980,242 + -1.6
1,980,242 + -1.4
1,980,242 + -1.7
1,980,243 - -2.0
1,980,243 - -1.9
1,980,243 - -0.6
1,980,243 - -0.9
1,980,636 + Ga0059261_1869 0.42 -0.8
1,980,637 - Ga0059261_1869 0.43 -1.2
1,980,909 + Ga0059261_1869 0.71 -1.1
1,980,909 + Ga0059261_1869 0.71 -3.3
1,980,910 - Ga0059261_1869 0.71 -1.0
1,980,912 + Ga0059261_1869 0.71 -1.9
1,980,912 + Ga0059261_1869 0.71 -3.3
1,980,912 + Ga0059261_1869 0.71 -2.0
1,980,912 + Ga0059261_1869 0.71 -2.2
1,980,913 - Ga0059261_1869 0.71 -1.6
1,981,079 + Ga0059261_1869 0.88 -1.5
1,981,079 + Ga0059261_1869 0.88 -3.1
1,981,080 - Ga0059261_1869 0.88 -1.5
1,981,080 - Ga0059261_1869 0.88 -2.3
1,981,153 + +0.4
1,981,154 - -1.5
1,981,154 - +0.1
1,981,196 + -4.0
1,981,196 + -2.3
1,981,196 + -1.2
1,981,196 + -1.4
1,981,196 + -0.5
1,981,196 + -2.2
1,981,197 - -1.5
1,981,197 - -2.0
1,981,197 - -1.6
1,981,197 - -2.1
1,981,197 - -0.4
1,981,197 - -0.6
1,981,197 - -2.0
1,981,197 - -2.0
1,981,197 - +0.4

Or see this region's nucleotide sequence