Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1472

Experiment: Doxycycline hyclate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1471 and Ga0059261_1472 overlap by 4 nucleotidesGa0059261_1472 and Ga0059261_1473 are separated by 32 nucleotidesGa0059261_1473 and Ga0059261_1474 are separated by 4 nucleotides Ga0059261_1471: Ga0059261_1471 - FeS assembly protein SufB, at 1,555,750 to 1,557,213 _1471 Ga0059261_1472: Ga0059261_1472 - hypothetical protein, at 1,557,210 to 1,557,692 _1472 Ga0059261_1473: Ga0059261_1473 - FeS assembly ATPase SufC, at 1,557,725 to 1,558,468 _1473 Ga0059261_1474: Ga0059261_1474 - ABC-type transport system involved in Fe-S cluster assembly, permease component, at 1,558,473 to 1,559,555 _1474 Position (kb) 1557 1558Strain fitness (log2 ratio) -2 -1 0 1at 1557.273 kb on + strand, within Ga0059261_1472at 1557.481 kb on + strand, within Ga0059261_1472at 1557.488 kb on + strand, within Ga0059261_1472

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0001 mg/ml
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1,557,273 + Ga0059261_1472 0.13 -2.2
1,557,481 + Ga0059261_1472 0.56 +0.6
1,557,488 + Ga0059261_1472 0.58 +0.6

Or see this region's nucleotide sequence