Experiment: Doxycycline hyclate 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0720 and Ga0059261_0721 are separated by 19 nucleotides Ga0059261_0721 and Ga0059261_0722 are separated by 99 nucleotides Ga0059261_0722 and Ga0059261_0723 are separated by 149 nucleotides Ga0059261_0723 and Ga0059261_0724 are separated by 167 nucleotides
Ga0059261_0720: Ga0059261_0720 - Predicted small integral membrane protein, at 753,861 to 754,268
_0720
Ga0059261_0721: Ga0059261_0721 - thiamine-phosphate diphosphorylase, at 754,288 to 754,977
_0721
Ga0059261_0722: Ga0059261_0722 - L-aminopeptidase/D-esterase, at 755,077 to 756,216
_0722
Ga0059261_0723: Ga0059261_0723 - hypothetical protein, at 756,366 to 756,752
_0723
Ga0059261_0724: Ga0059261_0724 - Acetyltransferase (GNAT) domain, at 756,920 to 757,369
_0724
Position (kb) 755
756
757 Strain fitness (log2 ratio) -2
-1
0
1 at 754.144 kb on + strand, within Ga0059261_0720 at 754.242 kb on + strand at 754.256 kb on + strand at 754.256 kb on + strand at 754.256 kb on + strand at 754.256 kb on + strand at 754.256 kb on + strand at 754.257 kb on - strand at 754.257 kb on - strand at 754.257 kb on - strand at 754.257 kb on - strand at 754.289 kb on + strand at 754.289 kb on + strand at 754.986 kb on + strand at 754.986 kb on + strand at 754.986 kb on + strand at 754.987 kb on - strand at 754.987 kb on - strand at 754.987 kb on - strand at 754.987 kb on - strand at 754.987 kb on - strand at 754.988 kb on + strand at 754.988 kb on + strand at 754.989 kb on - strand at 754.989 kb on - strand at 754.989 kb on - strand at 755.268 kb on + strand, within Ga0059261_0722 at 755.341 kb on + strand, within Ga0059261_0722 at 755.342 kb on - strand, within Ga0059261_0722 at 755.510 kb on + strand, within Ga0059261_0722 at 755.510 kb on + strand, within Ga0059261_0722 at 755.511 kb on - strand, within Ga0059261_0722 at 755.511 kb on - strand, within Ga0059261_0722 at 755.743 kb on + strand, within Ga0059261_0722 at 755.743 kb on + strand, within Ga0059261_0722 at 755.743 kb on + strand, within Ga0059261_0722 at 755.743 kb on + strand, within Ga0059261_0722 at 755.743 kb on + strand, within Ga0059261_0722 at 755.744 kb on - strand, within Ga0059261_0722 at 755.744 kb on - strand, within Ga0059261_0722 at 755.744 kb on - strand, within Ga0059261_0722 at 755.744 kb on - strand, within Ga0059261_0722 at 755.744 kb on - strand, within Ga0059261_0722 at 755.798 kb on - strand, within Ga0059261_0722 at 755.962 kb on + strand, within Ga0059261_0722 at 755.963 kb on - strand, within Ga0059261_0722 at 756.189 kb on + strand at 756.190 kb on - strand at 756.237 kb on - strand at 756.302 kb on + strand at 756.302 kb on + strand at 756.355 kb on - strand at 756.425 kb on + strand, within Ga0059261_0723 at 756.500 kb on + strand, within Ga0059261_0723 at 756.501 kb on - strand, within Ga0059261_0723 at 756.643 kb on + strand, within Ga0059261_0723 at 756.644 kb on - strand, within Ga0059261_0723 at 756.644 kb on - strand, within Ga0059261_0723 at 756.717 kb on + strand at 756.717 kb on + strand at 756.718 kb on - strand at 756.897 kb on + strand at 756.897 kb on + strand at 756.897 kb on + strand at 756.897 kb on + strand at 756.897 kb on + strand at 756.897 kb on + strand at 756.897 kb on + strand at 756.898 kb on - strand at 756.898 kb on - strand at 756.898 kb on - strand at 756.898 kb on - strand at 756.898 kb on - strand at 756.898 kb on - strand at 756.898 kb on - strand at 756.926 kb on + strand at 756.926 kb on + strand at 756.926 kb on + strand at 756.927 kb on - strand at 756.927 kb on - strand at 756.927 kb on - strand at 756.927 kb on - strand at 756.927 kb on - strand at 756.927 kb on - strand at 757.067 kb on + strand, within Ga0059261_0724 at 757.067 kb on + strand, within Ga0059261_0724 at 757.067 kb on + strand, within Ga0059261_0724 at 757.067 kb on + strand, within Ga0059261_0724 at 757.068 kb on - strand, within Ga0059261_0724 at 757.068 kb on - strand, within Ga0059261_0724 at 757.068 kb on - strand, within Ga0059261_0724 at 757.068 kb on - strand, within Ga0059261_0724 at 757.068 kb on - strand, within Ga0059261_0724 at 757.068 kb on - strand, within Ga0059261_0724
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0001 mg/ml remove 754,144 + Ga0059261_0720 0.69 +0.2 754,242 + +0.6 754,256 + +0.1 754,256 + +0.8 754,256 + -0.2 754,256 + -1.7 754,256 + -0.1 754,257 - -0.1 754,257 - -0.1 754,257 - -0.6 754,257 - +0.2 754,289 + -0.4 754,289 + -0.5 754,986 + -0.2 754,986 + -0.9 754,986 + +0.2 754,987 - +0.2 754,987 - -0.3 754,987 - -0.3 754,987 - +1.1 754,987 - +0.3 754,988 + -1.7 754,988 + -1.5 754,989 - +0.3 754,989 - -0.3 754,989 - +0.4 755,268 + Ga0059261_0722 0.17 -1.7 755,341 + Ga0059261_0722 0.23 +0.4 755,342 - Ga0059261_0722 0.23 +0.6 755,510 + Ga0059261_0722 0.38 -0.3 755,510 + Ga0059261_0722 0.38 +1.1 755,511 - Ga0059261_0722 0.38 +1.4 755,511 - Ga0059261_0722 0.38 +0.1 755,743 + Ga0059261_0722 0.58 +0.0 755,743 + Ga0059261_0722 0.58 +0.4 755,743 + Ga0059261_0722 0.58 +0.9 755,743 + Ga0059261_0722 0.58 -0.2 755,743 + Ga0059261_0722 0.58 -0.6 755,744 - Ga0059261_0722 0.59 -0.0 755,744 - Ga0059261_0722 0.59 +0.3 755,744 - Ga0059261_0722 0.59 +0.5 755,744 - Ga0059261_0722 0.59 +1.1 755,744 - Ga0059261_0722 0.59 +1.4 755,798 - Ga0059261_0722 0.63 +0.6 755,962 + Ga0059261_0722 0.78 +0.1 755,963 - Ga0059261_0722 0.78 +0.1 756,189 + -0.8 756,190 - -0.5 756,237 - -0.9 756,302 + -0.7 756,302 + -1.0 756,355 - -0.7 756,425 + Ga0059261_0723 0.15 -1.4 756,500 + Ga0059261_0723 0.35 +0.5 756,501 - Ga0059261_0723 0.35 +0.2 756,643 + Ga0059261_0723 0.72 -0.7 756,644 - Ga0059261_0723 0.72 +0.3 756,644 - Ga0059261_0723 0.72 -0.5 756,717 + -1.0 756,717 + +0.3 756,718 - +1.1 756,897 + -1.9 756,897 + +0.3 756,897 + -0.9 756,897 + +0.1 756,897 + -0.5 756,897 + +0.0 756,897 + -0.2 756,898 - +0.7 756,898 - -0.0 756,898 - -0.8 756,898 - -0.0 756,898 - +0.1 756,898 - +0.1 756,898 - +0.1 756,926 + -0.9 756,926 + -0.2 756,926 + +0.6 756,927 - +0.4 756,927 - -0.0 756,927 - +0.5 756,927 - -0.4 756,927 - +0.5 756,927 - -0.3 757,067 + Ga0059261_0724 0.33 -1.1 757,067 + Ga0059261_0724 0.33 +0.1 757,067 + Ga0059261_0724 0.33 -0.7 757,067 + Ga0059261_0724 0.33 -0.1 757,068 - Ga0059261_0724 0.33 -0.4 757,068 - Ga0059261_0724 0.33 +1.1 757,068 - Ga0059261_0724 0.33 -0.4 757,068 - Ga0059261_0724 0.33 -0.3 757,068 - Ga0059261_0724 0.33 -0.1 757,068 - Ga0059261_0724 0.33 -0.4
Or see this region's nucleotide sequence