Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0609

Experiment: Doxycycline hyclate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0608 and Ga0059261_0609 overlap by 4 nucleotidesGa0059261_0609 and Ga0059261_0610 are separated by 4 nucleotides Ga0059261_0608: Ga0059261_0608 - Periplasmic protein involved in polysaccharide export, at 642,391 to 644,247 _0608 Ga0059261_0609: Ga0059261_0609 - Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family, at 644,244 to 645,074 _0609 Ga0059261_0610: Ga0059261_0610 - HpcH/HpaI aldolase/citrate lyase family, at 645,079 to 645,891 _0610 Position (kb) 644 645 646Strain fitness (log2 ratio) -1 0 1 2at 643.301 kb on + strand, within Ga0059261_0608at 643.302 kb on - strand, within Ga0059261_0608at 643.311 kb on + strand, within Ga0059261_0608at 643.311 kb on + strand, within Ga0059261_0608at 643.312 kb on - strand, within Ga0059261_0608at 643.466 kb on + strand, within Ga0059261_0608at 643.466 kb on + strand, within Ga0059261_0608at 643.466 kb on + strand, within Ga0059261_0608at 643.466 kb on + strand, within Ga0059261_0608at 643.466 kb on + strand, within Ga0059261_0608at 643.467 kb on - strand, within Ga0059261_0608at 643.467 kb on - strand, within Ga0059261_0608at 643.467 kb on - strand, within Ga0059261_0608at 643.467 kb on - strand, within Ga0059261_0608at 643.467 kb on - strand, within Ga0059261_0608at 643.467 kb on - strand, within Ga0059261_0608at 643.467 kb on - strand, within Ga0059261_0608at 643.592 kb on + strand, within Ga0059261_0608at 643.592 kb on + strand, within Ga0059261_0608at 643.592 kb on + strand, within Ga0059261_0608at 643.625 kb on + strand, within Ga0059261_0608at 643.625 kb on + strand, within Ga0059261_0608at 643.625 kb on + strand, within Ga0059261_0608at 643.625 kb on + strand, within Ga0059261_0608at 643.625 kb on + strand, within Ga0059261_0608at 643.625 kb on + strand, within Ga0059261_0608at 643.625 kb on + strand, within Ga0059261_0608at 643.625 kb on + strand, within Ga0059261_0608at 643.626 kb on - strand, within Ga0059261_0608at 643.626 kb on - strand, within Ga0059261_0608at 643.626 kb on - strand, within Ga0059261_0608at 643.626 kb on - strand, within Ga0059261_0608at 643.626 kb on - strand, within Ga0059261_0608at 643.626 kb on - strand, within Ga0059261_0608at 643.724 kb on + strand, within Ga0059261_0608at 643.725 kb on - strand, within Ga0059261_0608at 643.725 kb on - strand, within Ga0059261_0608at 643.770 kb on + strand, within Ga0059261_0608at 643.770 kb on + strand, within Ga0059261_0608at 643.770 kb on + strand, within Ga0059261_0608at 643.771 kb on - strand, within Ga0059261_0608at 643.771 kb on - strand, within Ga0059261_0608at 643.862 kb on + strand, within Ga0059261_0608at 643.979 kb on + strand, within Ga0059261_0608at 643.979 kb on + strand, within Ga0059261_0608at 643.980 kb on - strand, within Ga0059261_0608at 644.475 kb on - strand, within Ga0059261_0609at 644.497 kb on + strand, within Ga0059261_0609at 644.497 kb on + strand, within Ga0059261_0609at 644.497 kb on + strand, within Ga0059261_0609at 644.498 kb on - strand, within Ga0059261_0609at 644.498 kb on - strand, within Ga0059261_0609at 644.498 kb on - strand, within Ga0059261_0609at 644.527 kb on - strand, within Ga0059261_0609at 644.527 kb on - strand, within Ga0059261_0609at 645.176 kb on + strand, within Ga0059261_0610at 645.177 kb on - strand, within Ga0059261_0610at 645.177 kb on - strand, within Ga0059261_0610at 645.179 kb on + strand, within Ga0059261_0610at 645.179 kb on + strand, within Ga0059261_0610at 645.180 kb on - strand, within Ga0059261_0610at 645.180 kb on - strand, within Ga0059261_0610at 645.180 kb on - strand, within Ga0059261_0610at 645.326 kb on - strand, within Ga0059261_0610at 645.599 kb on + strand, within Ga0059261_0610at 645.599 kb on + strand, within Ga0059261_0610at 645.599 kb on + strand, within Ga0059261_0610at 645.600 kb on - strand, within Ga0059261_0610at 645.600 kb on - strand, within Ga0059261_0610at 645.600 kb on - strand, within Ga0059261_0610at 645.600 kb on - strand, within Ga0059261_0610at 645.600 kb on - strand, within Ga0059261_0610at 645.621 kb on + strand, within Ga0059261_0610at 645.624 kb on - strand, within Ga0059261_0610at 645.624 kb on - strand, within Ga0059261_0610at 645.624 kb on - strand, within Ga0059261_0610at 645.624 kb on - strand, within Ga0059261_0610at 645.624 kb on - strand, within Ga0059261_0610at 645.624 kb on - strand, within Ga0059261_0610at 645.638 kb on + strand, within Ga0059261_0610at 645.680 kb on + strand, within Ga0059261_0610at 645.680 kb on + strand, within Ga0059261_0610at 645.680 kb on + strand, within Ga0059261_0610at 645.681 kb on - strand, within Ga0059261_0610at 645.837 kb on - strandat 645.920 kb on + strandat 645.920 kb on + strandat 645.920 kb on + strandat 645.920 kb on + strandat 645.920 kb on + strandat 645.920 kb on + strandat 645.921 kb on - strandat 645.921 kb on - strandat 645.921 kb on - strandat 645.921 kb on - strandat 645.960 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0001 mg/ml
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643,301 + Ga0059261_0608 0.49 +0.4
643,302 - Ga0059261_0608 0.49 +0.8
643,311 + Ga0059261_0608 0.50 +0.8
643,311 + Ga0059261_0608 0.50 -0.6
643,312 - Ga0059261_0608 0.50 +0.0
643,466 + Ga0059261_0608 0.58 -0.7
643,466 + Ga0059261_0608 0.58 -0.5
643,466 + Ga0059261_0608 0.58 -0.9
643,466 + Ga0059261_0608 0.58 +0.3
643,466 + Ga0059261_0608 0.58 +1.1
643,467 - Ga0059261_0608 0.58 +0.3
643,467 - Ga0059261_0608 0.58 +0.3
643,467 - Ga0059261_0608 0.58 +0.3
643,467 - Ga0059261_0608 0.58 +0.5
643,467 - Ga0059261_0608 0.58 +0.6
643,467 - Ga0059261_0608 0.58 -0.9
643,467 - Ga0059261_0608 0.58 +0.1
643,592 + Ga0059261_0608 0.65 +1.1
643,592 + Ga0059261_0608 0.65 +0.3
643,592 + Ga0059261_0608 0.65 +0.6
643,625 + Ga0059261_0608 0.66 -0.3
643,625 + Ga0059261_0608 0.66 -0.7
643,625 + Ga0059261_0608 0.66 -0.2
643,625 + Ga0059261_0608 0.66 +1.4
643,625 + Ga0059261_0608 0.66 -0.4
643,625 + Ga0059261_0608 0.66 +0.1
643,625 + Ga0059261_0608 0.66 -0.1
643,625 + Ga0059261_0608 0.66 +0.0
643,626 - Ga0059261_0608 0.67 -0.4
643,626 - Ga0059261_0608 0.67 -0.2
643,626 - Ga0059261_0608 0.67 -0.1
643,626 - Ga0059261_0608 0.67 -0.7
643,626 - Ga0059261_0608 0.67 +0.6
643,626 - Ga0059261_0608 0.67 +0.7
643,724 + Ga0059261_0608 0.72 -0.7
643,725 - Ga0059261_0608 0.72 +0.3
643,725 - Ga0059261_0608 0.72 +0.2
643,770 + Ga0059261_0608 0.74 +0.5
643,770 + Ga0059261_0608 0.74 +0.7
643,770 + Ga0059261_0608 0.74 +0.1
643,771 - Ga0059261_0608 0.74 -0.5
643,771 - Ga0059261_0608 0.74 +0.1
643,862 + Ga0059261_0608 0.79 +0.3
643,979 + Ga0059261_0608 0.86 +1.1
643,979 + Ga0059261_0608 0.86 -0.5
643,980 - Ga0059261_0608 0.86 -0.2
644,475 - Ga0059261_0609 0.28 +0.6
644,497 + Ga0059261_0609 0.30 +0.6
644,497 + Ga0059261_0609 0.30 +0.0
644,497 + Ga0059261_0609 0.30 +0.7
644,498 - Ga0059261_0609 0.31 +1.8
644,498 - Ga0059261_0609 0.31 -0.4
644,498 - Ga0059261_0609 0.31 -0.8
644,527 - Ga0059261_0609 0.34 +0.3
644,527 - Ga0059261_0609 0.34 -0.3
645,176 + Ga0059261_0610 0.12 +0.0
645,177 - Ga0059261_0610 0.12 -0.8
645,177 - Ga0059261_0610 0.12 -0.4
645,179 + Ga0059261_0610 0.12 -0.3
645,179 + Ga0059261_0610 0.12 -0.3
645,180 - Ga0059261_0610 0.12 -1.7
645,180 - Ga0059261_0610 0.12 -0.4
645,180 - Ga0059261_0610 0.12 -0.1
645,326 - Ga0059261_0610 0.30 +0.1
645,599 + Ga0059261_0610 0.64 +0.3
645,599 + Ga0059261_0610 0.64 +0.1
645,599 + Ga0059261_0610 0.64 -0.2
645,600 - Ga0059261_0610 0.64 +1.3
645,600 - Ga0059261_0610 0.64 -0.1
645,600 - Ga0059261_0610 0.64 +0.6
645,600 - Ga0059261_0610 0.64 +0.3
645,600 - Ga0059261_0610 0.64 -1.1
645,621 + Ga0059261_0610 0.67 +1.1
645,624 - Ga0059261_0610 0.67 -0.3
645,624 - Ga0059261_0610 0.67 +0.3
645,624 - Ga0059261_0610 0.67 -0.3
645,624 - Ga0059261_0610 0.67 +0.0
645,624 - Ga0059261_0610 0.67 -1.1
645,624 - Ga0059261_0610 0.67 -0.0
645,638 + Ga0059261_0610 0.69 +0.6
645,680 + Ga0059261_0610 0.74 +0.4
645,680 + Ga0059261_0610 0.74 +1.4
645,680 + Ga0059261_0610 0.74 -0.4
645,681 - Ga0059261_0610 0.74 -0.4
645,837 - -0.0
645,920 + +0.6
645,920 + -0.0
645,920 + -0.4
645,920 + -1.1
645,920 + +0.5
645,920 + -0.0
645,921 - -1.1
645,921 - -0.4
645,921 - +0.8
645,921 - -0.2
645,960 + -0.7

Or see this region's nucleotide sequence