Experiment: Doxycycline hyclate 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0120 and Ga0059261_0121 overlap by 17 nucleotides Ga0059261_0121 and Ga0059261_0122 are separated by 28 nucleotides Ga0059261_0122 and Ga0059261_0123 overlap by 4 nucleotides Ga0059261_0123 and Ga0059261_0124 overlap by 4 nucleotides
Ga0059261_0120: Ga0059261_0120 - lytic murein transglycosylase, at 114,126 to 115,178
_0120
Ga0059261_0121: Ga0059261_0121 - Sporulation related domain, at 115,162 to 116,040
_0121
Ga0059261_0122: Ga0059261_0122 - D-alanyl-D-alanine carboxypeptidase, at 116,069 to 117,256
_0122
Ga0059261_0123: Ga0059261_0123 - dTMP kinase, at 117,253 to 117,876
_0123
Ga0059261_0124: Ga0059261_0124 - DNA polymerase III, delta subunit, at 117,873 to 118,856
_0124
Position (kb)
116
117
118 Strain fitness (log2 ratio)
-1
0
1 at 115.080 kb on + strand at 115.080 kb on + strand at 115.098 kb on + strand at 115.098 kb on + strand at 115.116 kb on + strand at 115.116 kb on + strand at 115.118 kb on + strand at 115.118 kb on + strand at 115.118 kb on + strand at 115.134 kb on + strand at 115.134 kb on + strand at 115.134 kb on + strand at 115.430 kb on + strand, within Ga0059261_0121 at 115.455 kb on + strand, within Ga0059261_0121 at 115.536 kb on + strand, within Ga0059261_0121 at 116.008 kb on + strand at 116.008 kb on + strand at 116.008 kb on + strand at 116.603 kb on + strand, within Ga0059261_0122
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0001 mg/ml remove 115,080 + -0.1 115,080 + -0.7 115,098 + -0.4 115,098 + -0.1 115,116 + -1.1 115,116 + +0.6 115,118 + -0.5 115,118 + -0.3 115,118 + -1.7 115,134 + -1.2 115,134 + -1.3 115,134 + -0.5 115,430 + Ga0059261_0121 0.30 -0.2 115,455 + Ga0059261_0121 0.33 +0.3 115,536 + Ga0059261_0121 0.43 -0.8 116,008 + -1.5 116,008 + -0.8 116,008 + -0.1 116,603 + Ga0059261_0122 0.45 +0.8
Or see this region's nucleotide sequence