Experiment: Methyl beta-D-glucopyranoside (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS04140 and CA265_RS04145 are separated by 9 nucleotides CA265_RS04145 and CA265_RS04150 are separated by 510 nucleotides
CA265_RS04140: CA265_RS04140 - glycogen synthase, at 996,520 to 997,932
_RS04140
CA265_RS04145: CA265_RS04145 - glucose-1-phosphate adenylyltransferase, at 997,942 to 999,210
_RS04145
CA265_RS04150: CA265_RS04150 - glycosyl hydrolase, at 999,721 to 1,001,505
_RS04150
Position (kb) 997
998
999
1000 Strain fitness (log2 ratio) -1
0
1
2 at 996.945 kb on + strand, within CA265_RS04140 at 996.968 kb on - strand, within CA265_RS04140 at 997.042 kb on - strand, within CA265_RS04140 at 997.052 kb on - strand, within CA265_RS04140 at 997.052 kb on - strand, within CA265_RS04140 at 997.052 kb on - strand, within CA265_RS04140 at 997.055 kb on + strand, within CA265_RS04140 at 997.111 kb on - strand, within CA265_RS04140 at 997.241 kb on + strand, within CA265_RS04140 at 997.242 kb on - strand, within CA265_RS04140 at 997.244 kb on + strand, within CA265_RS04140 at 997.311 kb on - strand, within CA265_RS04140 at 997.571 kb on - strand, within CA265_RS04140 at 997.572 kb on + strand, within CA265_RS04140 at 997.573 kb on - strand, within CA265_RS04140 at 997.573 kb on - strand, within CA265_RS04140 at 997.606 kb on + strand, within CA265_RS04140 at 997.606 kb on + strand, within CA265_RS04140 at 997.677 kb on - strand, within CA265_RS04140 at 997.696 kb on - strand, within CA265_RS04140 at 997.696 kb on - strand, within CA265_RS04140 at 997.726 kb on - strand, within CA265_RS04140 at 997.737 kb on + strand, within CA265_RS04140 at 997.737 kb on + strand, within CA265_RS04140 at 997.738 kb on - strand, within CA265_RS04140 at 997.738 kb on - strand, within CA265_RS04140 at 997.738 kb on - strand, within CA265_RS04140 at 997.822 kb on + strand at 997.822 kb on + strand at 997.825 kb on - strand at 997.903 kb on + strand at 997.904 kb on - strand at 997.906 kb on - strand at 997.914 kb on - strand at 997.936 kb on + strand at 997.965 kb on + strand at 997.990 kb on - strand at 998.048 kb on - strand at 998.057 kb on + strand at 998.122 kb on - strand, within CA265_RS04145 at 998.159 kb on - strand, within CA265_RS04145 at 998.193 kb on + strand, within CA265_RS04145 at 998.194 kb on - strand, within CA265_RS04145 at 998.216 kb on + strand, within CA265_RS04145 at 998.217 kb on - strand, within CA265_RS04145 at 998.265 kb on + strand, within CA265_RS04145 at 998.265 kb on + strand, within CA265_RS04145 at 998.297 kb on - strand, within CA265_RS04145 at 998.303 kb on + strand, within CA265_RS04145 at 998.304 kb on - strand, within CA265_RS04145 at 998.541 kb on + strand, within CA265_RS04145 at 998.566 kb on + strand, within CA265_RS04145 at 998.566 kb on + strand, within CA265_RS04145 at 998.567 kb on - strand, within CA265_RS04145 at 998.595 kb on + strand, within CA265_RS04145 at 998.596 kb on - strand, within CA265_RS04145 at 998.601 kb on - strand, within CA265_RS04145 at 998.672 kb on + strand, within CA265_RS04145 at 998.678 kb on - strand, within CA265_RS04145 at 998.683 kb on + strand, within CA265_RS04145 at 998.693 kb on - strand, within CA265_RS04145 at 998.693 kb on - strand, within CA265_RS04145 at 998.739 kb on - strand, within CA265_RS04145 at 998.760 kb on + strand, within CA265_RS04145 at 998.769 kb on + strand, within CA265_RS04145 at 998.871 kb on + strand, within CA265_RS04145 at 998.872 kb on - strand, within CA265_RS04145 at 998.875 kb on - strand, within CA265_RS04145 at 998.891 kb on + strand, within CA265_RS04145 at 998.891 kb on + strand, within CA265_RS04145 at 998.939 kb on + strand, within CA265_RS04145 at 998.940 kb on - strand, within CA265_RS04145 at 998.957 kb on + strand, within CA265_RS04145 at 999.052 kb on - strand, within CA265_RS04145 at 999.052 kb on - strand, within CA265_RS04145 at 999.120 kb on - strand at 999.142 kb on + strand at 999.143 kb on - strand at 999.143 kb on - strand at 999.143 kb on - strand at 999.185 kb on + strand at 999.214 kb on - strand at 999.220 kb on + strand at 999.296 kb on - strand at 999.381 kb on + strand at 999.449 kb on + strand at 999.465 kb on - strand at 999.489 kb on - strand at 999.490 kb on + strand at 999.559 kb on + strand at 999.602 kb on + strand at 999.610 kb on + strand at 999.696 kb on - strand at 999.713 kb on + strand at 999.715 kb on + strand at 999.721 kb on - strand at 999.721 kb on - strand at 999.782 kb on + strand at 999.798 kb on + strand at 999.801 kb on - strand at 999.801 kb on - strand at 999.851 kb on + strand at 999.917 kb on - strand, within CA265_RS04150 at 999.917 kb on - strand, within CA265_RS04150 at 999.919 kb on + strand, within CA265_RS04150 at 999.922 kb on - strand, within CA265_RS04150 at 1000.007 kb on + strand, within CA265_RS04150 at 1000.008 kb on - strand, within CA265_RS04150 at 1000.009 kb on + strand, within CA265_RS04150 at 1000.009 kb on + strand, within CA265_RS04150 at 1000.023 kb on + strand, within CA265_RS04150 at 1000.024 kb on - strand, within CA265_RS04150 at 1000.186 kb on - strand, within CA265_RS04150 at 1000.201 kb on - strand, within CA265_RS04150 at 1000.201 kb on - strand, within CA265_RS04150 at 1000.205 kb on - strand, within CA265_RS04150
Per-strain Table
Position Strand Gene LocusTag Fraction Methyl beta-D-glucopyranoside (C) remove 996,945 + CA265_RS04140 0.30 +0.6 996,968 - CA265_RS04140 0.32 +1.8 997,042 - CA265_RS04140 0.37 +1.7 997,052 - CA265_RS04140 0.38 +1.3 997,052 - CA265_RS04140 0.38 +1.1 997,052 - CA265_RS04140 0.38 +1.3 997,055 + CA265_RS04140 0.38 +1.0 997,111 - CA265_RS04140 0.42 +1.1 997,241 + CA265_RS04140 0.51 +0.6 997,242 - CA265_RS04140 0.51 +1.2 997,244 + CA265_RS04140 0.51 -0.5 997,311 - CA265_RS04140 0.56 +1.0 997,571 - CA265_RS04140 0.74 +0.9 997,572 + CA265_RS04140 0.74 +0.9 997,573 - CA265_RS04140 0.75 +1.0 997,573 - CA265_RS04140 0.75 +0.9 997,606 + CA265_RS04140 0.77 +2.1 997,606 + CA265_RS04140 0.77 +0.7 997,677 - CA265_RS04140 0.82 +0.9 997,696 - CA265_RS04140 0.83 +1.5 997,696 - CA265_RS04140 0.83 +1.0 997,726 - CA265_RS04140 0.85 +1.1 997,737 + CA265_RS04140 0.86 +0.7 997,737 + CA265_RS04140 0.86 +0.1 997,738 - CA265_RS04140 0.86 +1.6 997,738 - CA265_RS04140 0.86 +1.7 997,738 - CA265_RS04140 0.86 +0.9 997,822 + +0.4 997,822 + +1.0 997,825 - +1.0 997,903 + +0.1 997,904 - +1.5 997,906 - +1.2 997,914 - +1.6 997,936 + +1.6 997,965 + +1.5 997,990 - +1.4 998,048 - +1.0 998,057 + +1.1 998,122 - CA265_RS04145 0.14 +0.7 998,159 - CA265_RS04145 0.17 +2.0 998,193 + CA265_RS04145 0.20 -0.3 998,194 - CA265_RS04145 0.20 +0.9 998,216 + CA265_RS04145 0.22 +1.3 998,217 - CA265_RS04145 0.22 +1.1 998,265 + CA265_RS04145 0.25 +1.6 998,265 + CA265_RS04145 0.25 +1.0 998,297 - CA265_RS04145 0.28 +1.2 998,303 + CA265_RS04145 0.28 +0.8 998,304 - CA265_RS04145 0.29 +0.9 998,541 + CA265_RS04145 0.47 -0.3 998,566 + CA265_RS04145 0.49 +0.3 998,566 + CA265_RS04145 0.49 +1.8 998,567 - CA265_RS04145 0.49 +0.9 998,595 + CA265_RS04145 0.51 +0.7 998,596 - CA265_RS04145 0.52 +0.9 998,601 - CA265_RS04145 0.52 +0.7 998,672 + CA265_RS04145 0.58 +0.6 998,678 - CA265_RS04145 0.58 +1.5 998,683 + CA265_RS04145 0.58 +0.8 998,693 - CA265_RS04145 0.59 +1.2 998,693 - CA265_RS04145 0.59 +1.3 998,739 - CA265_RS04145 0.63 +1.5 998,760 + CA265_RS04145 0.64 +1.1 998,769 + CA265_RS04145 0.65 +0.9 998,871 + CA265_RS04145 0.73 +1.5 998,872 - CA265_RS04145 0.73 +1.1 998,875 - CA265_RS04145 0.74 +1.3 998,891 + CA265_RS04145 0.75 +0.6 998,891 + CA265_RS04145 0.75 +1.8 998,939 + CA265_RS04145 0.79 +0.7 998,940 - CA265_RS04145 0.79 +1.0 998,957 + CA265_RS04145 0.80 -0.0 999,052 - CA265_RS04145 0.87 +1.9 999,052 - CA265_RS04145 0.87 +1.8 999,120 - +1.2 999,142 + +1.0 999,143 - +1.6 999,143 - +1.2 999,143 - +0.9 999,185 + +1.2 999,214 - +0.6 999,220 + +0.3 999,296 - -0.8 999,381 + +0.3 999,449 + +0.1 999,465 - +0.1 999,489 - -0.6 999,490 + -0.1 999,559 + +0.3 999,602 + -1.2 999,610 + +1.2 999,696 - -0.8 999,713 + -0.9 999,715 + -0.3 999,721 - -0.6 999,721 - -1.6 999,782 + +0.5 999,798 + -1.4 999,801 - +0.4 999,801 - -0.9 999,851 + +0.3 999,917 - CA265_RS04150 0.11 -0.9 999,917 - CA265_RS04150 0.11 -0.5 999,919 + CA265_RS04150 0.11 -0.2 999,922 - CA265_RS04150 0.11 -0.3 1,000,007 + CA265_RS04150 0.16 -0.9 1,000,008 - CA265_RS04150 0.16 -0.1 1,000,009 + CA265_RS04150 0.16 -0.8 1,000,009 + CA265_RS04150 0.16 +0.2 1,000,023 + CA265_RS04150 0.17 -0.7 1,000,024 - CA265_RS04150 0.17 -0.3 1,000,186 - CA265_RS04150 0.26 -0.1 1,000,201 - CA265_RS04150 0.27 +0.2 1,000,201 - CA265_RS04150 0.27 -0.5 1,000,205 - CA265_RS04150 0.27 +0.1
Or see this region's nucleotide sequence