Experiment: 1-ethyl-3-methylimidazolium acetate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_25215 and AO356_25220 overlap by 8 nucleotides AO356_25220 and AO356_25225 are separated by 10 nucleotides AO356_25225 and AO356_25230 are separated by 25 nucleotides
AO356_25215: AO356_25215 - nitrate reductase, at 5,708,501 to 5,709,256
_25215
AO356_25220: AO356_25220 - nitrate reductase, at 5,709,249 to 5,709,929
_25220
AO356_25225: AO356_25225 - peptidylprolyl isomerase, at 5,709,940 to 5,710,893
_25225
AO356_25230: AO356_25230 - cyclic pyranopterin phosphate synthase MoaA, at 5,710,919 to 5,711,911
_25230
Position (kb) 5709
5710
5711 Strain fitness (log2 ratio) -1
0
1 at 5708.960 kb on + strand, within AO356_25215 at 5709.282 kb on + strand at 5709.282 kb on + strand at 5709.288 kb on + strand at 5709.288 kb on + strand at 5709.289 kb on - strand at 5709.345 kb on + strand, within AO356_25220 at 5709.345 kb on + strand, within AO356_25220 at 5709.345 kb on + strand, within AO356_25220 at 5709.478 kb on - strand, within AO356_25220 at 5709.478 kb on - strand, within AO356_25220 at 5710.694 kb on - strand, within AO356_25225 at 5710.816 kb on + strand at 5710.817 kb on - strand at 5711.007 kb on - strand at 5711.007 kb on - strand at 5711.160 kb on + strand, within AO356_25230 at 5711.161 kb on - strand, within AO356_25230 at 5711.450 kb on + strand, within AO356_25230 at 5711.450 kb on + strand, within AO356_25230 at 5711.618 kb on + strand, within AO356_25230 at 5711.619 kb on - strand, within AO356_25230 at 5711.677 kb on + strand, within AO356_25230
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 5 mM remove 5,708,960 + AO356_25215 0.61 -0.3 5,709,282 + +1.0 5,709,282 + +0.7 5,709,288 + -0.4 5,709,288 + -0.3 5,709,289 - -0.6 5,709,345 + AO356_25220 0.14 -1.4 5,709,345 + AO356_25220 0.14 +0.8 5,709,345 + AO356_25220 0.14 -0.0 5,709,478 - AO356_25220 0.34 -0.8 5,709,478 - AO356_25220 0.34 -0.2 5,710,694 - AO356_25225 0.79 +1.0 5,710,816 + +0.4 5,710,817 - -0.2 5,711,007 - -1.7 5,711,007 - -0.0 5,711,160 + AO356_25230 0.24 -0.4 5,711,161 - AO356_25230 0.24 +0.5 5,711,450 + AO356_25230 0.53 +0.6 5,711,450 + AO356_25230 0.53 +1.1 5,711,618 + AO356_25230 0.70 -0.4 5,711,619 - AO356_25230 0.70 +0.2 5,711,677 + AO356_25230 0.76 -0.1
Or see this region's nucleotide sequence