Experiment: 1-ethyl-3-methylimidazolium acetate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_04110 and AO356_04115 are separated by 476 nucleotides AO356_04115 and AO356_04120 are separated by 103 nucleotides
AO356_04110: AO356_04110 - sodium:solute symporter, at 924,279 to 925,667
_04110
AO356_04115: AO356_04115 - LysR family transcriptional regulator, at 926,144 to 927,037
_04115
AO356_04120: AO356_04120 - hypothetical protein, at 927,141 to 928,313
_04120
Position (kb) 926
927
928 Strain fitness (log2 ratio) -2
-1
0
1
2 at 925.425 kb on + strand, within AO356_04110 at 925.426 kb on - strand, within AO356_04110 at 925.426 kb on - strand, within AO356_04110 at 925.474 kb on - strand, within AO356_04110 at 925.582 kb on - strand at 925.582 kb on - strand at 925.582 kb on - strand at 925.584 kb on + strand at 925.584 kb on + strand at 925.584 kb on + strand at 925.585 kb on - strand at 925.726 kb on + strand at 925.727 kb on - strand at 925.727 kb on - strand at 925.753 kb on + strand at 925.753 kb on + strand at 925.873 kb on + strand at 925.874 kb on - strand at 925.874 kb on - strand at 925.874 kb on - strand at 925.874 kb on - strand at 925.874 kb on - strand at 925.874 kb on - strand at 925.874 kb on - strand at 925.874 kb on - strand at 925.874 kb on - strand at 925.874 kb on - strand at 925.874 kb on - strand at 925.874 kb on - strand at 925.874 kb on - strand at 925.874 kb on - strand at 925.874 kb on - strand at 925.878 kb on - strand at 926.062 kb on + strand at 926.063 kb on - strand at 926.063 kb on - strand at 926.065 kb on + strand at 926.065 kb on + strand at 926.066 kb on - strand at 926.078 kb on + strand at 926.078 kb on + strand at 926.079 kb on - strand at 926.112 kb on + strand at 926.113 kb on - strand at 926.113 kb on - strand at 926.386 kb on - strand, within AO356_04115 at 926.445 kb on - strand, within AO356_04115 at 926.706 kb on + strand, within AO356_04115 at 926.706 kb on + strand, within AO356_04115 at 926.707 kb on - strand, within AO356_04115 at 926.707 kb on - strand, within AO356_04115 at 926.748 kb on + strand, within AO356_04115 at 926.748 kb on + strand, within AO356_04115 at 926.748 kb on + strand, within AO356_04115 at 926.748 kb on + strand, within AO356_04115 at 926.748 kb on + strand, within AO356_04115 at 926.748 kb on + strand, within AO356_04115 at 926.748 kb on + strand, within AO356_04115 at 926.749 kb on - strand, within AO356_04115 at 926.749 kb on - strand, within AO356_04115 at 927.103 kb on - strand at 927.151 kb on + strand at 927.152 kb on - strand at 927.152 kb on - strand at 927.226 kb on + strand at 927.291 kb on + strand, within AO356_04120 at 927.292 kb on - strand, within AO356_04120 at 927.292 kb on - strand, within AO356_04120 at 927.292 kb on - strand, within AO356_04120 at 927.300 kb on + strand, within AO356_04120 at 927.300 kb on + strand, within AO356_04120 at 927.301 kb on - strand, within AO356_04120 at 927.639 kb on + strand, within AO356_04120 at 927.639 kb on + strand, within AO356_04120 at 927.639 kb on + strand, within AO356_04120 at 927.640 kb on - strand, within AO356_04120 at 927.640 kb on - strand, within AO356_04120 at 927.768 kb on + strand, within AO356_04120 at 927.769 kb on - strand, within AO356_04120 at 927.769 kb on - strand, within AO356_04120 at 927.769 kb on - strand, within AO356_04120 at 927.769 kb on - strand, within AO356_04120 at 927.790 kb on - strand, within AO356_04120 at 927.790 kb on - strand, within AO356_04120 at 927.790 kb on - strand, within AO356_04120 at 927.899 kb on - strand, within AO356_04120 at 927.982 kb on + strand, within AO356_04120 at 927.983 kb on - strand, within AO356_04120
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 5 mM remove 925,425 + AO356_04110 0.83 -0.7 925,426 - AO356_04110 0.83 +1.3 925,426 - AO356_04110 0.83 +0.3 925,474 - AO356_04110 0.86 +1.0 925,582 - -0.8 925,582 - -0.4 925,582 - +0.6 925,584 + -1.2 925,584 + -0.7 925,584 + -1.4 925,585 - -0.6 925,726 + -1.2 925,727 - -0.2 925,727 - -0.4 925,753 + -0.3 925,753 + +1.2 925,873 + +0.1 925,874 - +0.1 925,874 - +0.3 925,874 - +0.9 925,874 - -0.9 925,874 - -0.2 925,874 - +0.7 925,874 - +0.5 925,874 - -0.1 925,874 - +0.3 925,874 - -1.3 925,874 - +0.7 925,874 - +0.2 925,874 - -0.0 925,874 - +0.3 925,874 - +0.0 925,878 - +0.1 926,062 + -0.2 926,063 - -0.1 926,063 - +0.2 926,065 + -0.5 926,065 + -0.8 926,066 - +0.3 926,078 + -0.2 926,078 + -0.0 926,079 - +0.5 926,112 + -1.1 926,113 - +0.8 926,113 - -0.1 926,386 - AO356_04115 0.27 -0.2 926,445 - AO356_04115 0.34 -0.7 926,706 + AO356_04115 0.63 +0.2 926,706 + AO356_04115 0.63 -0.1 926,707 - AO356_04115 0.63 +0.6 926,707 - AO356_04115 0.63 +0.2 926,748 + AO356_04115 0.68 +1.6 926,748 + AO356_04115 0.68 +0.0 926,748 + AO356_04115 0.68 -0.3 926,748 + AO356_04115 0.68 -0.7 926,748 + AO356_04115 0.68 -0.4 926,748 + AO356_04115 0.68 -0.7 926,748 + AO356_04115 0.68 +0.1 926,749 - AO356_04115 0.68 -1.1 926,749 - AO356_04115 0.68 -0.7 927,103 - -0.3 927,151 + -0.2 927,152 - +1.2 927,152 - +0.6 927,226 + -0.3 927,291 + AO356_04120 0.13 -0.3 927,292 - AO356_04120 0.13 -0.1 927,292 - AO356_04120 0.13 -0.2 927,292 - AO356_04120 0.13 +1.7 927,300 + AO356_04120 0.14 +0.2 927,300 + AO356_04120 0.14 -2.0 927,301 - AO356_04120 0.14 +0.8 927,639 + AO356_04120 0.42 +1.8 927,639 + AO356_04120 0.42 +0.1 927,639 + AO356_04120 0.42 -0.3 927,640 - AO356_04120 0.43 -0.1 927,640 - AO356_04120 0.43 -0.1 927,768 + AO356_04120 0.53 +0.5 927,769 - AO356_04120 0.54 -0.2 927,769 - AO356_04120 0.54 +1.0 927,769 - AO356_04120 0.54 +0.6 927,769 - AO356_04120 0.54 +0.7 927,790 - AO356_04120 0.55 -0.2 927,790 - AO356_04120 0.55 -0.1 927,790 - AO356_04120 0.55 +0.2 927,899 - AO356_04120 0.65 -0.3 927,982 + AO356_04120 0.72 +0.4 927,983 - AO356_04120 0.72 -0.4
Or see this region's nucleotide sequence