Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_04105

Experiment: 1-ethyl-3-methylimidazolium acetate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_04095 and AO356_04100 are separated by 9 nucleotidesAO356_04100 and AO356_04105 are separated by 52 nucleotidesAO356_04105 and AO356_04110 are separated by 223 nucleotides AO356_04095: AO356_04095 - agmatinase, at 921,127 to 922,077 _04095 AO356_04100: AO356_04100 - ketosteroid isomerase, at 922,087 to 922,494 _04100 AO356_04105: AO356_04105 - nitrate reductase, at 922,547 to 924,055 _04105 AO356_04110: AO356_04110 - sodium:solute symporter, at 924,279 to 925,667 _04110 Position (kb) 922 923 924 925Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 921.550 kb on - strand, within AO356_04095at 921.703 kb on + strand, within AO356_04095at 921.704 kb on - strand, within AO356_04095at 921.704 kb on - strand, within AO356_04095at 921.832 kb on + strand, within AO356_04095at 921.833 kb on - strand, within AO356_04095at 921.975 kb on - strand, within AO356_04095at 922.036 kb on + strandat 922.037 kb on - strandat 922.037 kb on - strandat 922.053 kb on - strandat 922.162 kb on + strand, within AO356_04100at 922.162 kb on + strand, within AO356_04100at 922.163 kb on - strand, within AO356_04100at 922.201 kb on + strand, within AO356_04100at 922.201 kb on + strand, within AO356_04100at 922.202 kb on - strand, within AO356_04100at 922.237 kb on + strand, within AO356_04100at 922.492 kb on + strandat 922.492 kb on + strandat 922.552 kb on + strandat 922.552 kb on + strandat 922.553 kb on - strandat 922.553 kb on - strandat 922.553 kb on - strandat 922.553 kb on - strandat 922.553 kb on - strandat 922.553 kb on - strandat 922.553 kb on - strandat 922.553 kb on - strandat 922.558 kb on + strandat 922.558 kb on + strandat 922.564 kb on + strandat 922.564 kb on + strandat 922.565 kb on - strandat 922.565 kb on - strandat 922.565 kb on - strandat 922.565 kb on - strandat 922.565 kb on - strandat 922.565 kb on - strandat 922.565 kb on - strandat 922.669 kb on + strandat 922.669 kb on + strandat 922.669 kb on + strandat 922.670 kb on - strandat 922.670 kb on - strandat 923.036 kb on + strand, within AO356_04105at 923.036 kb on + strand, within AO356_04105at 923.036 kb on + strand, within AO356_04105at 923.037 kb on - strand, within AO356_04105at 923.177 kb on + strand, within AO356_04105at 923.205 kb on + strand, within AO356_04105at 923.259 kb on - strand, within AO356_04105at 923.259 kb on - strand, within AO356_04105at 923.259 kb on - strand, within AO356_04105at 923.384 kb on + strand, within AO356_04105at 923.384 kb on + strand, within AO356_04105at 923.384 kb on + strand, within AO356_04105at 923.385 kb on - strand, within AO356_04105at 923.402 kb on + strand, within AO356_04105at 923.403 kb on - strand, within AO356_04105at 923.501 kb on + strand, within AO356_04105at 923.501 kb on + strand, within AO356_04105at 923.502 kb on - strand, within AO356_04105at 923.502 kb on - strand, within AO356_04105at 923.720 kb on + strand, within AO356_04105at 923.720 kb on + strand, within AO356_04105at 923.721 kb on - strand, within AO356_04105at 923.721 kb on - strand, within AO356_04105at 923.721 kb on - strand, within AO356_04105at 923.942 kb on + strandat 923.942 kb on + strandat 923.943 kb on - strandat 923.943 kb on - strandat 923.982 kb on + strandat 923.982 kb on + strandat 923.983 kb on - strandat 923.984 kb on + strandat 923.984 kb on + strandat 923.984 kb on + strandat 923.985 kb on - strandat 924.028 kb on + strandat 924.249 kb on + strandat 924.250 kb on - strandat 924.250 kb on - strandat 924.250 kb on - strandat 924.292 kb on + strandat 924.292 kb on + strandat 924.292 kb on + strandat 924.292 kb on + strandat 924.293 kb on - strandat 924.309 kb on + strandat 924.309 kb on + strandat 924.310 kb on - strandat 924.310 kb on - strandat 924.310 kb on - strandat 924.340 kb on - strandat 924.372 kb on + strandat 924.372 kb on + strandat 924.373 kb on - strandat 924.373 kb on - strandat 924.408 kb on + strandat 924.409 kb on - strandat 924.409 kb on - strandat 924.409 kb on - strandat 924.409 kb on - strandat 924.412 kb on + strandat 924.412 kb on + strandat 924.412 kb on + strandat 924.412 kb on + strandat 924.413 kb on - strandat 924.413 kb on - strandat 924.413 kb on - strandat 924.474 kb on + strand, within AO356_04110at 924.480 kb on + strand, within AO356_04110at 924.576 kb on + strand, within AO356_04110at 924.576 kb on + strand, within AO356_04110at 924.577 kb on - strand, within AO356_04110at 924.577 kb on - strand, within AO356_04110at 924.607 kb on - strand, within AO356_04110at 924.607 kb on - strand, within AO356_04110at 924.651 kb on + strand, within AO356_04110at 924.651 kb on + strand, within AO356_04110at 924.651 kb on + strand, within AO356_04110at 924.651 kb on + strand, within AO356_04110at 924.651 kb on + strand, within AO356_04110at 924.652 kb on - strand, within AO356_04110at 924.652 kb on - strand, within AO356_04110at 924.652 kb on - strand, within AO356_04110at 924.652 kb on - strand, within AO356_04110at 924.765 kb on + strand, within AO356_04110at 924.765 kb on + strand, within AO356_04110at 924.765 kb on + strand, within AO356_04110at 924.765 kb on + strand, within AO356_04110at 924.765 kb on + strand, within AO356_04110at 924.766 kb on - strand, within AO356_04110at 924.915 kb on + strand, within AO356_04110at 924.915 kb on + strand, within AO356_04110at 924.916 kb on - strand, within AO356_04110at 924.957 kb on + strand, within AO356_04110at 924.957 kb on + strand, within AO356_04110at 924.958 kb on - strand, within AO356_04110at 924.958 kb on - strand, within AO356_04110at 924.969 kb on + strand, within AO356_04110at 924.969 kb on + strand, within AO356_04110at 924.970 kb on - strand, within AO356_04110

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 5 mM
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921,550 - AO356_04095 0.44 +0.1
921,703 + AO356_04095 0.61 +0.3
921,704 - AO356_04095 0.61 +1.3
921,704 - AO356_04095 0.61 +0.1
921,832 + AO356_04095 0.74 -0.2
921,833 - AO356_04095 0.74 +1.4
921,975 - AO356_04095 0.89 +0.5
922,036 + -0.9
922,037 - +0.6
922,037 - +0.5
922,053 - -0.0
922,162 + AO356_04100 0.18 -0.5
922,162 + AO356_04100 0.18 -0.2
922,163 - AO356_04100 0.19 -1.6
922,201 + AO356_04100 0.28 +0.6
922,201 + AO356_04100 0.28 -0.6
922,202 - AO356_04100 0.28 -0.1
922,237 + AO356_04100 0.37 -0.6
922,492 + +2.2
922,492 + +0.2
922,552 + -0.1
922,552 + +0.4
922,553 - +0.1
922,553 - -0.5
922,553 - +0.3
922,553 - -0.8
922,553 - -0.2
922,553 - -0.2
922,553 - +0.1
922,553 - +0.5
922,558 + +1.8
922,558 + -1.5
922,564 + +1.4
922,564 + -1.4
922,565 - +0.3
922,565 - -0.4
922,565 - +0.5
922,565 - -0.0
922,565 - +0.0
922,565 - +0.3
922,565 - -0.1
922,669 + +0.6
922,669 + +0.4
922,669 + -0.2
922,670 - +0.7
922,670 - -0.1
923,036 + AO356_04105 0.32 -1.0
923,036 + AO356_04105 0.32 +0.3
923,036 + AO356_04105 0.32 -1.4
923,037 - AO356_04105 0.32 +0.1
923,177 + AO356_04105 0.42 +0.1
923,205 + AO356_04105 0.44 -0.3
923,259 - AO356_04105 0.47 -0.7
923,259 - AO356_04105 0.47 +0.1
923,259 - AO356_04105 0.47 -1.0
923,384 + AO356_04105 0.55 -0.4
923,384 + AO356_04105 0.55 -0.3
923,384 + AO356_04105 0.55 -0.0
923,385 - AO356_04105 0.56 -0.3
923,402 + AO356_04105 0.57 +0.1
923,403 - AO356_04105 0.57 -0.0
923,501 + AO356_04105 0.63 +0.3
923,501 + AO356_04105 0.63 +0.6
923,502 - AO356_04105 0.63 -0.9
923,502 - AO356_04105 0.63 +0.8
923,720 + AO356_04105 0.78 -3.0
923,720 + AO356_04105 0.78 +0.6
923,721 - AO356_04105 0.78 +0.3
923,721 - AO356_04105 0.78 +0.7
923,721 - AO356_04105 0.78 +0.1
923,942 + +0.2
923,942 + +0.1
923,943 - -0.9
923,943 - -0.8
923,982 + -0.0
923,982 + +0.7
923,983 - -2.0
923,984 + +0.6
923,984 + +0.6
923,984 + -0.0
923,985 - -0.2
924,028 + +0.0
924,249 + -0.8
924,250 - +0.1
924,250 - -0.0
924,250 - +1.0
924,292 + +0.3
924,292 + +0.3
924,292 + +0.7
924,292 + +0.9
924,293 - -0.1
924,309 + -0.1
924,309 + +0.1
924,310 - -1.0
924,310 - -0.2
924,310 - +0.6
924,340 - -0.0
924,372 + -0.1
924,372 + -0.2
924,373 - +0.3
924,373 - -2.2
924,408 + +0.9
924,409 - +0.6
924,409 - -0.8
924,409 - +0.3
924,409 - +0.6
924,412 + +0.3
924,412 + -0.6
924,412 + +1.1
924,412 + -0.0
924,413 - +0.7
924,413 - -0.0
924,413 - +0.7
924,474 + AO356_04110 0.14 -0.2
924,480 + AO356_04110 0.14 -0.7
924,576 + AO356_04110 0.21 +0.4
924,576 + AO356_04110 0.21 -0.0
924,577 - AO356_04110 0.21 +2.2
924,577 - AO356_04110 0.21 +0.1
924,607 - AO356_04110 0.24 +0.1
924,607 - AO356_04110 0.24 +1.2
924,651 + AO356_04110 0.27 -0.7
924,651 + AO356_04110 0.27 +0.2
924,651 + AO356_04110 0.27 -0.0
924,651 + AO356_04110 0.27 -0.2
924,651 + AO356_04110 0.27 +1.4
924,652 - AO356_04110 0.27 -0.8
924,652 - AO356_04110 0.27 +0.7
924,652 - AO356_04110 0.27 -0.6
924,652 - AO356_04110 0.27 +0.4
924,765 + AO356_04110 0.35 +0.8
924,765 + AO356_04110 0.35 -0.0
924,765 + AO356_04110 0.35 +0.2
924,765 + AO356_04110 0.35 +0.4
924,765 + AO356_04110 0.35 +0.5
924,766 - AO356_04110 0.35 -0.8
924,915 + AO356_04110 0.46 +0.1
924,915 + AO356_04110 0.46 -0.2
924,916 - AO356_04110 0.46 -0.1
924,957 + AO356_04110 0.49 +0.4
924,957 + AO356_04110 0.49 -0.3
924,958 - AO356_04110 0.49 -0.1
924,958 - AO356_04110 0.49 +0.6
924,969 + AO356_04110 0.50 -0.8
924,969 + AO356_04110 0.50 +0.8
924,970 - AO356_04110 0.50 +0.3

Or see this region's nucleotide sequence