Experiment: 1-ethyl-3-methylimidazolium acetate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_02020 and AO356_02025 overlap by 6 nucleotides AO356_02025 and AO356_02030 are separated by 478 nucleotides AO356_02030 and AO356_02035 overlap by 4 nucleotides AO356_02035 and AO356_02040 overlap by 4 nucleotides
AO356_02020: AO356_02020 - phage tail protein, at 443,885 to 444,349
_02020
AO356_02025: AO356_02025 - hypothetical protein, at 444,344 to 444,790
_02025
AO356_02030: AO356_02030 - baseplate assembly protein, at 445,269 to 445,841
_02030
AO356_02035: AO356_02035 - baseplate assembly protein, at 445,838 to 446,182
_02035
AO356_02040: AO356_02040 - baseplate assembly protein, at 446,179 to 447,090
_02040
Position (kb) 445
446 Strain fitness (log2 ratio) -1
0
1 at 444.277 kb on - strand, within AO356_02020 at 444.277 kb on - strand, within AO356_02020 at 444.277 kb on - strand, within AO356_02020 at 444.301 kb on - strand, within AO356_02020 at 444.358 kb on + strand at 444.405 kb on + strand, within AO356_02025 at 444.669 kb on - strand, within AO356_02025 at 444.724 kb on - strand, within AO356_02025 at 444.734 kb on - strand, within AO356_02025 at 444.749 kb on - strand at 444.869 kb on + strand at 444.965 kb on - strand at 445.112 kb on + strand at 445.113 kb on - strand at 445.137 kb on + strand at 445.218 kb on + strand at 445.218 kb on + strand at 445.218 kb on + strand at 445.280 kb on - strand at 445.569 kb on + strand, within AO356_02030 at 445.704 kb on + strand, within AO356_02030 at 445.705 kb on - strand, within AO356_02030 at 445.705 kb on - strand, within AO356_02030 at 445.944 kb on - strand, within AO356_02035 at 446.231 kb on + strand at 446.232 kb on - strand at 446.232 kb on - strand at 446.246 kb on - strand at 446.275 kb on + strand, within AO356_02040 at 446.275 kb on + strand, within AO356_02040 at 446.275 kb on + strand, within AO356_02040 at 446.276 kb on - strand, within AO356_02040 at 446.613 kb on + strand, within AO356_02040 at 446.613 kb on + strand, within AO356_02040 at 446.613 kb on + strand, within AO356_02040 at 446.614 kb on - strand, within AO356_02040 at 446.614 kb on - strand, within AO356_02040 at 446.617 kb on + strand, within AO356_02040 at 446.617 kb on + strand, within AO356_02040 at 446.617 kb on + strand, within AO356_02040 at 446.617 kb on + strand, within AO356_02040 at 446.617 kb on + strand, within AO356_02040 at 446.617 kb on + strand, within AO356_02040 at 446.617 kb on + strand, within AO356_02040 at 446.618 kb on - strand, within AO356_02040 at 446.618 kb on - strand, within AO356_02040 at 446.618 kb on - strand, within AO356_02040 at 446.618 kb on - strand, within AO356_02040 at 446.618 kb on - strand, within AO356_02040 at 446.618 kb on - strand, within AO356_02040 at 446.618 kb on - strand, within AO356_02040 at 446.762 kb on - strand, within AO356_02040 at 446.830 kb on + strand, within AO356_02040 at 446.830 kb on + strand, within AO356_02040 at 446.831 kb on - strand, within AO356_02040
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 5 mM remove 444,277 - AO356_02020 0.84 +1.2 444,277 - AO356_02020 0.84 +1.5 444,277 - AO356_02020 0.84 +0.3 444,301 - AO356_02020 0.89 -1.1 444,358 + -0.1 444,405 + AO356_02025 0.14 -0.2 444,669 - AO356_02025 0.73 +1.1 444,724 - AO356_02025 0.85 -0.0 444,734 - AO356_02025 0.87 -0.3 444,749 - +1.1 444,869 + +0.1 444,965 - -0.6 445,112 + +0.0 445,113 - -1.1 445,137 + +0.4 445,218 + -0.0 445,218 + -0.1 445,218 + -0.3 445,280 - -0.2 445,569 + AO356_02030 0.52 +0.7 445,704 + AO356_02030 0.76 -0.2 445,705 - AO356_02030 0.76 -0.1 445,705 - AO356_02030 0.76 -0.1 445,944 - AO356_02035 0.31 +0.7 446,231 + -0.2 446,232 - -0.2 446,232 - -0.8 446,246 - -1.0 446,275 + AO356_02040 0.11 -0.4 446,275 + AO356_02040 0.11 -0.8 446,275 + AO356_02040 0.11 +0.1 446,276 - AO356_02040 0.11 +0.0 446,613 + AO356_02040 0.48 +0.9 446,613 + AO356_02040 0.48 -0.5 446,613 + AO356_02040 0.48 +0.4 446,614 - AO356_02040 0.48 +0.1 446,614 - AO356_02040 0.48 +1.0 446,617 + AO356_02040 0.48 -0.8 446,617 + AO356_02040 0.48 +0.1 446,617 + AO356_02040 0.48 +0.8 446,617 + AO356_02040 0.48 -0.3 446,617 + AO356_02040 0.48 +1.5 446,617 + AO356_02040 0.48 +0.7 446,617 + AO356_02040 0.48 -0.9 446,618 - AO356_02040 0.48 -0.4 446,618 - AO356_02040 0.48 +0.1 446,618 - AO356_02040 0.48 -0.6 446,618 - AO356_02040 0.48 +0.3 446,618 - AO356_02040 0.48 +0.0 446,618 - AO356_02040 0.48 +0.7 446,618 - AO356_02040 0.48 +1.0 446,762 - AO356_02040 0.64 +1.5 446,830 + AO356_02040 0.71 -0.6 446,830 + AO356_02040 0.71 +0.1 446,831 - AO356_02040 0.71 +0.1
Or see this region's nucleotide sequence