Experiment: 1-ethyl-3-methylimidazolium acetate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_01435 and AO356_01440 are separated by 98 nucleotides AO356_01440 and AO356_01445 are separated by 76 nucleotides AO356_01445 and AO356_01450 are separated by 294 nucleotides
AO356_01435: AO356_01435 - LysR family transcriptional regulator, at 328,539 to 329,468
_01435
AO356_01440: AO356_01440 - hypothetical protein, at 329,567 to 330,331
_01440
AO356_01445: AO356_01445 - hypothetical protein, at 330,408 to 330,995
_01445
AO356_01450: AO356_01450 - transposase, at 331,290 to 331,595
_01450
Position (kb) 329
330
331 Strain fitness (log2 ratio) -1
0
1 at 328.858 kb on + strand, within AO356_01435 at 329.049 kb on + strand, within AO356_01435 at 329.328 kb on + strand, within AO356_01435 at 329.328 kb on + strand, within AO356_01435 at 329.328 kb on + strand, within AO356_01435 at 329.328 kb on + strand, within AO356_01435 at 329.329 kb on - strand, within AO356_01435 at 329.329 kb on - strand, within AO356_01435 at 329.329 kb on - strand, within AO356_01435 at 329.356 kb on - strand, within AO356_01435 at 329.356 kb on - strand, within AO356_01435 at 329.358 kb on + strand, within AO356_01435 at 329.359 kb on - strand, within AO356_01435 at 329.359 kb on - strand, within AO356_01435 at 329.533 kb on - strand at 329.789 kb on + strand, within AO356_01440 at 329.789 kb on + strand, within AO356_01440 at 329.789 kb on + strand, within AO356_01440 at 329.790 kb on - strand, within AO356_01440 at 329.790 kb on - strand, within AO356_01440 at 329.939 kb on + strand, within AO356_01440 at 329.940 kb on - strand, within AO356_01440 at 329.940 kb on - strand, within AO356_01440 at 330.003 kb on + strand, within AO356_01440 at 330.004 kb on - strand, within AO356_01440 at 330.004 kb on - strand, within AO356_01440 at 330.188 kb on + strand, within AO356_01440 at 330.188 kb on + strand, within AO356_01440 at 330.188 kb on + strand, within AO356_01440 at 330.188 kb on + strand, within AO356_01440 at 330.188 kb on + strand, within AO356_01440 at 330.189 kb on - strand, within AO356_01440 at 330.189 kb on - strand, within AO356_01440 at 330.189 kb on - strand, within AO356_01440 at 330.189 kb on - strand, within AO356_01440 at 330.189 kb on - strand, within AO356_01440 at 330.189 kb on - strand, within AO356_01440 at 330.423 kb on - strand at 330.572 kb on + strand, within AO356_01445 at 330.573 kb on - strand, within AO356_01445 at 330.636 kb on + strand, within AO356_01445 at 330.636 kb on + strand, within AO356_01445 at 330.636 kb on + strand, within AO356_01445 at 330.636 kb on + strand, within AO356_01445 at 330.636 kb on + strand, within AO356_01445 at 330.636 kb on + strand, within AO356_01445 at 330.636 kb on + strand, within AO356_01445 at 330.637 kb on - strand, within AO356_01445 at 330.637 kb on - strand, within AO356_01445 at 330.637 kb on - strand, within AO356_01445 at 330.637 kb on - strand, within AO356_01445 at 330.637 kb on - strand, within AO356_01445 at 330.993 kb on + strand at 330.993 kb on + strand at 330.993 kb on + strand at 330.994 kb on - strand at 330.994 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 5 mM remove 328,858 + AO356_01435 0.34 +1.1 329,049 + AO356_01435 0.55 -1.1 329,328 + AO356_01435 0.85 -0.1 329,328 + AO356_01435 0.85 -0.8 329,328 + AO356_01435 0.85 -0.4 329,328 + AO356_01435 0.85 -0.5 329,329 - AO356_01435 0.85 +0.8 329,329 - AO356_01435 0.85 -0.4 329,329 - AO356_01435 0.85 +0.9 329,356 - AO356_01435 0.88 +0.3 329,356 - AO356_01435 0.88 +0.0 329,358 + AO356_01435 0.88 +0.3 329,359 - AO356_01435 0.88 -0.7 329,359 - AO356_01435 0.88 +0.7 329,533 - +0.3 329,789 + AO356_01440 0.29 +0.7 329,789 + AO356_01440 0.29 -0.0 329,789 + AO356_01440 0.29 -0.5 329,790 - AO356_01440 0.29 -0.2 329,790 - AO356_01440 0.29 -0.3 329,939 + AO356_01440 0.49 +0.2 329,940 - AO356_01440 0.49 -0.1 329,940 - AO356_01440 0.49 -0.4 330,003 + AO356_01440 0.57 +0.2 330,004 - AO356_01440 0.57 +0.5 330,004 - AO356_01440 0.57 +1.5 330,188 + AO356_01440 0.81 +0.6 330,188 + AO356_01440 0.81 +0.0 330,188 + AO356_01440 0.81 +0.2 330,188 + AO356_01440 0.81 -1.0 330,188 + AO356_01440 0.81 -0.3 330,189 - AO356_01440 0.81 -0.3 330,189 - AO356_01440 0.81 -0.2 330,189 - AO356_01440 0.81 +0.3 330,189 - AO356_01440 0.81 -0.9 330,189 - AO356_01440 0.81 +1.5 330,189 - AO356_01440 0.81 -1.1 330,423 - +0.5 330,572 + AO356_01445 0.28 +0.8 330,573 - AO356_01445 0.28 +0.7 330,636 + AO356_01445 0.39 -0.3 330,636 + AO356_01445 0.39 +0.9 330,636 + AO356_01445 0.39 -1.2 330,636 + AO356_01445 0.39 +0.5 330,636 + AO356_01445 0.39 -0.3 330,636 + AO356_01445 0.39 -1.1 330,636 + AO356_01445 0.39 -0.3 330,637 - AO356_01445 0.39 -0.0 330,637 - AO356_01445 0.39 +1.1 330,637 - AO356_01445 0.39 +0.8 330,637 - AO356_01445 0.39 +0.6 330,637 - AO356_01445 0.39 -0.2 330,993 + +0.9 330,993 + +1.6 330,993 + -0.5 330,994 - -0.1 330,994 - +0.5
Or see this region's nucleotide sequence