Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_00165

Experiment: 1-ethyl-3-methylimidazolium acetate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_00155 and AO356_00160 overlap by 4 nucleotidesAO356_00160 and AO356_00165 are separated by 9 nucleotidesAO356_00165 and AO356_00170 overlap by 19 nucleotidesAO356_00170 and AO356_00175 overlap by 4 nucleotides AO356_00155: AO356_00155 - pili assembly chaperone, at 28,954 to 29,496 _00155 AO356_00160: AO356_00160 - chemotaxis protein, at 29,493 to 30,164 _00160 AO356_00165: AO356_00165 - hypothetical protein, at 30,174 to 30,893 _00165 AO356_00170: AO356_00170 - lytic transglycosylase, at 30,875 to 31,423 _00170 AO356_00175: AO356_00175 - conjugal transfer protein, at 31,420 to 31,935 _00175 Position (kb) 30 31Strain fitness (log2 ratio) -2 -1 0 1at 29.207 kb on + strand, within AO356_00155at 29.208 kb on - strand, within AO356_00155at 29.219 kb on + strand, within AO356_00155at 29.236 kb on + strand, within AO356_00155at 29.236 kb on + strand, within AO356_00155at 29.236 kb on + strand, within AO356_00155at 29.236 kb on + strand, within AO356_00155at 29.236 kb on + strand, within AO356_00155at 29.237 kb on - strand, within AO356_00155at 29.237 kb on - strand, within AO356_00155at 29.237 kb on - strand, within AO356_00155at 29.286 kb on - strand, within AO356_00155at 29.292 kb on - strand, within AO356_00155at 29.292 kb on - strand, within AO356_00155at 29.292 kb on - strand, within AO356_00155at 29.346 kb on - strand, within AO356_00155at 29.357 kb on + strand, within AO356_00155at 29.358 kb on - strand, within AO356_00155at 29.358 kb on - strand, within AO356_00155at 29.568 kb on + strand, within AO356_00160at 29.568 kb on + strand, within AO356_00160at 29.578 kb on - strand, within AO356_00160at 29.578 kb on - strand, within AO356_00160at 29.620 kb on + strand, within AO356_00160at 29.738 kb on + strand, within AO356_00160at 29.738 kb on + strand, within AO356_00160at 29.777 kb on - strand, within AO356_00160at 30.029 kb on + strand, within AO356_00160at 30.187 kb on + strandat 30.472 kb on + strand, within AO356_00165at 30.473 kb on - strand, within AO356_00165at 30.522 kb on + strand, within AO356_00165at 30.522 kb on + strand, within AO356_00165at 30.523 kb on - strand, within AO356_00165at 30.629 kb on - strand, within AO356_00165at 30.629 kb on - strand, within AO356_00165at 30.696 kb on - strand, within AO356_00165at 30.699 kb on + strand, within AO356_00165at 30.699 kb on + strand, within AO356_00165at 30.699 kb on + strand, within AO356_00165at 30.699 kb on + strand, within AO356_00165at 30.699 kb on + strand, within AO356_00165at 30.700 kb on - strand, within AO356_00165at 30.700 kb on - strand, within AO356_00165at 30.700 kb on - strand, within AO356_00165at 30.700 kb on - strand, within AO356_00165at 30.703 kb on + strand, within AO356_00165at 30.703 kb on + strand, within AO356_00165at 30.703 kb on + strand, within AO356_00165at 30.704 kb on - strand, within AO356_00165at 30.792 kb on - strand, within AO356_00165at 30.898 kb on + strandat 31.126 kb on - strand, within AO356_00170at 31.189 kb on - strand, within AO356_00170at 31.266 kb on + strand, within AO356_00170at 31.319 kb on + strand, within AO356_00170at 31.437 kb on + strandat 31.461 kb on - strandat 31.461 kb on - strandat 31.554 kb on + strand, within AO356_00175at 31.554 kb on + strand, within AO356_00175at 31.555 kb on - strand, within AO356_00175at 31.555 kb on - strand, within AO356_00175at 31.689 kb on - strand, within AO356_00175at 31.845 kb on + strand, within AO356_00175at 31.845 kb on + strand, within AO356_00175at 31.846 kb on - strand, within AO356_00175

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 5 mM
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29,207 + AO356_00155 0.47 +1.2
29,208 - AO356_00155 0.47 -0.4
29,219 + AO356_00155 0.49 +0.6
29,236 + AO356_00155 0.52 +0.5
29,236 + AO356_00155 0.52 +0.7
29,236 + AO356_00155 0.52 +0.8
29,236 + AO356_00155 0.52 -1.8
29,236 + AO356_00155 0.52 -0.8
29,237 - AO356_00155 0.52 +0.4
29,237 - AO356_00155 0.52 +0.1
29,237 - AO356_00155 0.52 -0.8
29,286 - AO356_00155 0.61 +0.7
29,292 - AO356_00155 0.62 +0.1
29,292 - AO356_00155 0.62 -0.6
29,292 - AO356_00155 0.62 +0.5
29,346 - AO356_00155 0.72 -0.3
29,357 + AO356_00155 0.74 +0.7
29,358 - AO356_00155 0.74 +0.2
29,358 - AO356_00155 0.74 -0.6
29,568 + AO356_00160 0.11 +0.1
29,568 + AO356_00160 0.11 -0.2
29,578 - AO356_00160 0.13 +0.1
29,578 - AO356_00160 0.13 +0.9
29,620 + AO356_00160 0.19 -0.5
29,738 + AO356_00160 0.36 -0.4
29,738 + AO356_00160 0.36 -0.7
29,777 - AO356_00160 0.42 +1.0
30,029 + AO356_00160 0.80 -0.2
30,187 + -0.2
30,472 + AO356_00165 0.41 +0.1
30,473 - AO356_00165 0.42 -0.3
30,522 + AO356_00165 0.48 +1.0
30,522 + AO356_00165 0.48 -0.6
30,523 - AO356_00165 0.48 -0.3
30,629 - AO356_00165 0.63 +0.0
30,629 - AO356_00165 0.63 +0.1
30,696 - AO356_00165 0.72 +0.3
30,699 + AO356_00165 0.73 -0.0
30,699 + AO356_00165 0.73 -0.2
30,699 + AO356_00165 0.73 +0.1
30,699 + AO356_00165 0.73 -0.6
30,699 + AO356_00165 0.73 -0.3
30,700 - AO356_00165 0.73 +0.3
30,700 - AO356_00165 0.73 +0.6
30,700 - AO356_00165 0.73 +0.6
30,700 - AO356_00165 0.73 +0.0
30,703 + AO356_00165 0.73 +0.1
30,703 + AO356_00165 0.73 -0.0
30,703 + AO356_00165 0.73 -0.2
30,704 - AO356_00165 0.74 -0.0
30,792 - AO356_00165 0.86 +0.2
30,898 + -0.0
31,126 - AO356_00170 0.46 +0.6
31,189 - AO356_00170 0.57 -0.5
31,266 + AO356_00170 0.71 -1.5
31,319 + AO356_00170 0.81 +0.1
31,437 + +0.1
31,461 - -0.3
31,461 - +0.7
31,554 + AO356_00175 0.26 -0.5
31,554 + AO356_00175 0.26 -1.0
31,555 - AO356_00175 0.26 +0.8
31,555 - AO356_00175 0.26 +1.1
31,689 - AO356_00175 0.52 -0.7
31,845 + AO356_00175 0.82 +0.7
31,845 + AO356_00175 0.82 +0.0
31,846 - AO356_00175 0.83 -0.6

Or see this region's nucleotide sequence