Experiment: Dimethyl Sulfoxide 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3701 and Shew_3702 are separated by 118 nucleotides Shew_3702 and Shew_3703 are separated by 135 nucleotides Shew_3703 and Shew_3704 overlap by 8 nucleotides
Shew_3701: Shew_3701 - hypothetical protein (RefSeq), at 4,405,317 to 4,406,393
_3701
Shew_3702: Shew_3702 - glycosyl transferase family protein (RefSeq), at 4,406,512 to 4,407,591
_3702
Shew_3703: Shew_3703 - dTDP-4-dehydrorhamnose 3,5-epimerase (RefSeq), at 4,407,727 to 4,408,275
_3703
Shew_3704: Shew_3704 - dTDP-glucose 4,6-dehydratase (RefSeq), at 4,408,268 to 4,409,338
_3704
Position (kb) 4406
4407
4408 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 4405.839 kb on - strand, within Shew_3701 at 4405.923 kb on - strand, within Shew_3701 at 4405.925 kb on - strand, within Shew_3701 at 4406.024 kb on - strand, within Shew_3701 at 4406.233 kb on - strand, within Shew_3701 at 4406.277 kb on - strand, within Shew_3701 at 4406.348 kb on + strand at 4406.563 kb on - strand at 4406.743 kb on - strand, within Shew_3702 at 4406.945 kb on + strand, within Shew_3702 at 4407.026 kb on + strand, within Shew_3702 at 4407.146 kb on + strand, within Shew_3702 at 4407.267 kb on - strand, within Shew_3702 at 4407.979 kb on + strand, within Shew_3703 at 4408.062 kb on + strand, within Shew_3703 at 4408.285 kb on - strand at 4408.390 kb on - strand, within Shew_3704 at 4408.392 kb on + strand, within Shew_3704 at 4408.493 kb on - strand, within Shew_3704
Per-strain Table
Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 5 vol% remove 4,405,839 - Shew_3701 0.48 +0.4 4,405,923 - Shew_3701 0.56 +0.1 4,405,925 - Shew_3701 0.56 +0.2 4,406,024 - Shew_3701 0.66 +0.3 4,406,233 - Shew_3701 0.85 -0.0 4,406,277 - Shew_3701 0.89 -0.0 4,406,348 + -0.2 4,406,563 - -0.2 4,406,743 - Shew_3702 0.21 -2.6 4,406,945 + Shew_3702 0.40 -2.3 4,407,026 + Shew_3702 0.48 -4.4 4,407,146 + Shew_3702 0.59 -3.6 4,407,267 - Shew_3702 0.70 -2.8 4,407,979 + Shew_3703 0.46 -0.4 4,408,062 + Shew_3703 0.61 -0.4 4,408,285 - -0.7 4,408,390 - Shew_3704 0.11 -0.1 4,408,392 + Shew_3704 0.12 +0.1 4,408,493 - Shew_3704 0.21 -0.3
Or see this region's nucleotide sequence