Strain Fitness in Shewanella loihica PV-4 around Shew_2063

Experiment: Dimethyl Sulfoxide 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2061 and Shew_2062 are separated by 184 nucleotidesShew_2062 and Shew_2063 overlap by 7 nucleotidesShew_2063 and Shew_2064 are separated by 126 nucleotides Shew_2061: Shew_2061 - radical SAM domain-containing protein (RefSeq), at 2,380,599 to 2,381,267 _2061 Shew_2062: Shew_2062 - exsB protein (RefSeq), at 2,381,452 to 2,382,135 _2062 Shew_2063: Shew_2063 - rhomboid family protein (RefSeq), at 2,382,129 to 2,382,713 _2063 Shew_2064: Shew_2064 - excinuclease ABC subunit B (RefSeq), at 2,382,840 to 2,384,858 _2064 Position (kb) 2382 2383Strain fitness (log2 ratio) -2 -1 0 1at 2381.331 kb on - strandat 2381.663 kb on + strand, within Shew_2062at 2381.730 kb on + strand, within Shew_2062at 2381.978 kb on + strand, within Shew_2062at 2382.216 kb on - strand, within Shew_2063at 2382.559 kb on + strand, within Shew_2063at 2383.002 kb on - strandat 2383.212 kb on + strand, within Shew_2064at 2383.341 kb on - strand, within Shew_2064

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Per-strain Table

Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 5 vol%
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2,381,331 - +0.4
2,381,663 + Shew_2062 0.31 +0.6
2,381,730 + Shew_2062 0.41 +0.3
2,381,978 + Shew_2062 0.77 -2.3
2,382,216 - Shew_2063 0.15 -1.3
2,382,559 + Shew_2063 0.74 -0.8
2,383,002 - +0.1
2,383,212 + Shew_2064 0.18 +0.3
2,383,341 - Shew_2064 0.25 +0.0

Or see this region's nucleotide sequence