Strain Fitness in Shewanella loihica PV-4 around Shew_1626

Experiment: Dimethyl Sulfoxide 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1625 and Shew_1626 are separated by 370 nucleotidesShew_1626 and Shew_1627 are separated by 75 nucleotides Shew_1625: Shew_1625 - L-serine dehydratase 1 (RefSeq), at 1,857,730 to 1,859,106 _1625 Shew_1626: Shew_1626 - beta-hexosaminidase (RefSeq), at 1,859,477 to 1,860,478 _1626 Shew_1627: Shew_1627 - hypothetical protein (RefSeq), at 1,860,554 to 1,861,096 _1627 Position (kb) 1859 1860 1861Strain fitness (log2 ratio) -1 0 1at 1858.868 kb on + strand, within Shew_1625at 1859.057 kb on - strandat 1859.207 kb on + strandat 1860.034 kb on - strand, within Shew_1626at 1860.203 kb on - strand, within Shew_1626at 1860.360 kb on + strand, within Shew_1626at 1860.471 kb on - strandat 1860.999 kb on - strand, within Shew_1627

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Per-strain Table

Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 5 vol%
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1,858,868 + Shew_1625 0.83 -0.1
1,859,057 - +0.1
1,859,207 + -1.4
1,860,034 - Shew_1626 0.56 -0.5
1,860,203 - Shew_1626 0.72 -0.3
1,860,360 + Shew_1626 0.88 -0.3
1,860,471 - +0.1
1,860,999 - Shew_1627 0.82 -0.1

Or see this region's nucleotide sequence