Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_4143

Experiment: Ammonium chloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_4142 and Dshi_4143 are separated by 9 nucleotidesDshi_4143 and Dshi_4144 are separated by 117 nucleotidesDshi_4144 and Dshi_4145 are separated by 6 nucleotides Dshi_4142: Dshi_4142 - NAD-dependent epimerase/dehydratase (RefSeq), at 74,668 to 75,609 _4142 Dshi_4143: Dshi_4143 - glycosyl transferase family 2 (RefSeq), at 75,619 to 76,494 _4143 Dshi_4144: Dshi_4144 - transferase hexapeptide repeat containing protein (RefSeq), at 76,612 to 77,184 _4144 Dshi_4145: Dshi_4145 - glycosyl transferase family 2 (RefSeq), at 77,191 to 78,195 _4145 Position (kb) 75 76 77Strain fitness (log2 ratio) -2 -1 0 1at 74.646 kb on + strandat 74.654 kb on - strandat 74.693 kb on - strandat 74.710 kb on + strandat 74.715 kb on + strandat 74.748 kb on + strandat 74.753 kb on + strandat 74.756 kb on - strandat 74.756 kb on - strandat 74.768 kb on + strand, within Dshi_4142at 74.791 kb on - strand, within Dshi_4142at 74.795 kb on - strand, within Dshi_4142at 74.809 kb on + strand, within Dshi_4142at 74.943 kb on - strand, within Dshi_4142at 74.957 kb on + strand, within Dshi_4142at 74.999 kb on - strand, within Dshi_4142at 75.193 kb on - strand, within Dshi_4142at 75.270 kb on - strand, within Dshi_4142at 75.294 kb on + strand, within Dshi_4142at 75.358 kb on + strand, within Dshi_4142at 75.358 kb on - strand, within Dshi_4142at 75.358 kb on - strand, within Dshi_4142at 75.677 kb on + strandat 75.697 kb on + strandat 75.716 kb on + strand, within Dshi_4143at 75.764 kb on + strand, within Dshi_4143at 75.837 kb on + strand, within Dshi_4143at 75.862 kb on + strand, within Dshi_4143at 75.910 kb on - strand, within Dshi_4143at 76.002 kb on + strand, within Dshi_4143at 76.021 kb on + strand, within Dshi_4143at 76.099 kb on + strand, within Dshi_4143at 76.110 kb on + strand, within Dshi_4143at 76.203 kb on + strand, within Dshi_4143at 76.235 kb on - strand, within Dshi_4143at 76.306 kb on + strand, within Dshi_4143at 76.318 kb on - strand, within Dshi_4143at 76.362 kb on + strand, within Dshi_4143at 76.648 kb on - strandat 76.648 kb on - strandat 76.661 kb on - strandat 76.751 kb on - strand, within Dshi_4144at 76.825 kb on + strand, within Dshi_4144at 76.951 kb on - strand, within Dshi_4144at 76.979 kb on - strand, within Dshi_4144at 76.981 kb on + strand, within Dshi_4144at 77.045 kb on + strand, within Dshi_4144at 77.120 kb on - strand, within Dshi_4144at 77.138 kb on + strandat 77.309 kb on - strand, within Dshi_4145at 77.314 kb on - strand, within Dshi_4145at 77.359 kb on - strand, within Dshi_4145at 77.373 kb on - strand, within Dshi_4145at 77.476 kb on + strand, within Dshi_4145at 77.486 kb on + strand, within Dshi_4145

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N)
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74,646 + -0.5
74,654 - -0.2
74,693 - -2.4
74,710 + +0.8
74,715 + -0.3
74,748 + -0.8
74,753 + +0.0
74,756 - +0.2
74,756 - -0.9
74,768 + Dshi_4142 0.11 -0.8
74,791 - Dshi_4142 0.13 -0.5
74,795 - Dshi_4142 0.13 -0.0
74,809 + Dshi_4142 0.15 -0.1
74,943 - Dshi_4142 0.29 +0.2
74,957 + Dshi_4142 0.31 -0.8
74,999 - Dshi_4142 0.35 +0.8
75,193 - Dshi_4142 0.56 -2.4
75,270 - Dshi_4142 0.64 -0.6
75,294 + Dshi_4142 0.66 +0.5
75,358 + Dshi_4142 0.73 -2.6
75,358 - Dshi_4142 0.73 -0.9
75,358 - Dshi_4142 0.73 +0.0
75,677 + +0.2
75,697 + +0.1
75,716 + Dshi_4143 0.11 -0.3
75,764 + Dshi_4143 0.17 +0.5
75,837 + Dshi_4143 0.25 -0.8
75,862 + Dshi_4143 0.28 +0.4
75,910 - Dshi_4143 0.33 -0.4
76,002 + Dshi_4143 0.44 -1.1
76,021 + Dshi_4143 0.46 -0.7
76,099 + Dshi_4143 0.55 -0.6
76,110 + Dshi_4143 0.56 -0.7
76,203 + Dshi_4143 0.67 +1.3
76,235 - Dshi_4143 0.70 +1.5
76,306 + Dshi_4143 0.78 -0.4
76,318 - Dshi_4143 0.80 +1.0
76,362 + Dshi_4143 0.85 -0.5
76,648 - -0.2
76,648 - -1.1
76,661 - -0.9
76,751 - Dshi_4144 0.24 +0.2
76,825 + Dshi_4144 0.37 -0.1
76,951 - Dshi_4144 0.59 -0.8
76,979 - Dshi_4144 0.64 +0.2
76,981 + Dshi_4144 0.64 -0.1
77,045 + Dshi_4144 0.76 -0.4
77,120 - Dshi_4144 0.89 +0.1
77,138 + +0.8
77,309 - Dshi_4145 0.12 -0.4
77,314 - Dshi_4145 0.12 -1.7
77,359 - Dshi_4145 0.17 -2.6
77,373 - Dshi_4145 0.18 -0.3
77,476 + Dshi_4145 0.28 -1.1
77,486 + Dshi_4145 0.29 +0.3

Or see this region's nucleotide sequence