Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2576

Experiment: Ammonium chloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2574 and Dshi_2575 are separated by 88 nucleotidesDshi_2575 and Dshi_2576 overlap by 4 nucleotidesDshi_2576 and Dshi_2577 are separated by 100 nucleotides Dshi_2574: Dshi_2574 - CoA-binding domain protein (RefSeq), at 2,740,741 to 2,741,226 _2574 Dshi_2575: Dshi_2575 - phosphoribosyl-ATP pyrophosphohydrolase (RefSeq), at 2,741,315 to 2,741,623 _2575 Dshi_2576: Dshi_2576 - imidazoleglycerol phosphate synthase, cyclase subunit (RefSeq), at 2,741,620 to 2,742,381 _2576 Dshi_2577: Dshi_2577 - putative RNA methylase (RefSeq), at 2,742,482 to 2,743,606 _2577 Position (kb) 2741 2742 2743Strain fitness (log2 ratio) -2 -1 0 1at 2740.683 kb on - strandat 2740.815 kb on - strand, within Dshi_2574at 2741.201 kb on - strandat 2741.213 kb on + strandat 2742.564 kb on + strandat 2742.619 kb on - strand, within Dshi_2577at 2742.704 kb on + strand, within Dshi_2577at 2742.854 kb on + strand, within Dshi_2577at 2742.956 kb on - strand, within Dshi_2577at 2743.133 kb on - strand, within Dshi_2577at 2743.255 kb on + strand, within Dshi_2577at 2743.311 kb on + strand, within Dshi_2577at 2743.373 kb on - strand, within Dshi_2577

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N)
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2,740,683 - +0.4
2,740,815 - Dshi_2574 0.15 -1.3
2,741,201 - -0.2
2,741,213 + +0.2
2,742,564 + +0.7
2,742,619 - Dshi_2577 0.12 -0.5
2,742,704 + Dshi_2577 0.20 -2.0
2,742,854 + Dshi_2577 0.33 +0.4
2,742,956 - Dshi_2577 0.42 -0.2
2,743,133 - Dshi_2577 0.58 -0.5
2,743,255 + Dshi_2577 0.69 -0.5
2,743,311 + Dshi_2577 0.74 -1.3
2,743,373 - Dshi_2577 0.79 -0.1

Or see this region's nucleotide sequence