Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1307

Experiment: Ammonium chloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1305 and Dshi_1306 are separated by 1 nucleotidesDshi_1306 and Dshi_1307 are separated by 341 nucleotidesDshi_1307 and Dshi_1308 overlap by 10 nucleotidesDshi_1308 and Dshi_1309 are separated by 63 nucleotides Dshi_1305: Dshi_1305 - 17 kDa surface antigen (RefSeq), at 1,359,760 to 1,359,978 _1305 Dshi_1306: Dshi_1306 - hypothetical protein (RefSeq), at 1,359,980 to 1,360,588 _1306 Dshi_1307: Dshi_1307 - NADH-ubiquinone/plastoquinone oxidoreductase chain 3 (RefSeq), at 1,360,930 to 1,361,295 _1307 Dshi_1308: Dshi_1308 - NADH-quinone oxidoreductase, B subunit (RefSeq), at 1,361,286 to 1,361,819 _1308 Dshi_1309: Dshi_1309 - NADH (or F420H2) dehydrogenase, subunit C (RefSeq), at 1,361,883 to 1,362,530 _1309 Position (kb) 1360 1361 1362Strain fitness (log2 ratio) -1 0 1at 1360.249 kb on + strand, within Dshi_1306at 1360.257 kb on - strand, within Dshi_1306at 1360.262 kb on + strand, within Dshi_1306at 1360.289 kb on + strand, within Dshi_1306at 1360.308 kb on - strand, within Dshi_1306at 1360.332 kb on - strand, within Dshi_1306at 1360.489 kb on + strand, within Dshi_1306at 1360.559 kb on - strandat 1360.562 kb on - strandat 1360.634 kb on - strandat 1360.653 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N)
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1,360,249 + Dshi_1306 0.44 +0.5
1,360,257 - Dshi_1306 0.45 -0.1
1,360,262 + Dshi_1306 0.46 -0.8
1,360,289 + Dshi_1306 0.51 -1.7
1,360,308 - Dshi_1306 0.54 +0.3
1,360,332 - Dshi_1306 0.58 -0.1
1,360,489 + Dshi_1306 0.84 -1.7
1,360,559 - -0.3
1,360,562 - -0.0
1,360,634 - -0.9
1,360,653 - +0.1

Or see this region's nucleotide sequence