Experiment: Ammonium chloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0832 and Dshi_0833 are separated by 464 nucleotides Dshi_0833 and Dshi_0834 are separated by 93 nucleotides
Dshi_0832: Dshi_0832 - hypothetical protein (RefSeq), at 839,877 to 840,893
_0832
Dshi_0833: Dshi_0833 - AMP-dependent synthetase and ligase (RefSeq), at 841,358 to 842,983
_0833
Dshi_0834: Dshi_0834 - protein of unknown function DUF6 transmembrane (RefSeq), at 843,077 to 843,994
_0834
Position (kb) 841
842
843 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 840.434 kb on + strand, within Dshi_0832 at 840.594 kb on - strand, within Dshi_0832 at 840.688 kb on - strand, within Dshi_0832 at 840.854 kb on - strand at 840.878 kb on - strand at 840.893 kb on + strand at 840.895 kb on + strand at 841.015 kb on + strand at 841.043 kb on - strand at 841.043 kb on - strand at 841.153 kb on + strand at 841.161 kb on - strand at 841.319 kb on + strand at 841.342 kb on + strand at 841.413 kb on + strand at 841.498 kb on + strand at 841.578 kb on + strand, within Dshi_0833 at 841.583 kb on + strand, within Dshi_0833 at 841.591 kb on - strand, within Dshi_0833 at 841.609 kb on - strand, within Dshi_0833 at 841.757 kb on + strand, within Dshi_0833 at 841.934 kb on - strand, within Dshi_0833 at 841.934 kb on - strand, within Dshi_0833 at 841.983 kb on + strand, within Dshi_0833 at 842.041 kb on + strand, within Dshi_0833 at 842.170 kb on - strand, within Dshi_0833 at 842.187 kb on + strand, within Dshi_0833 at 842.382 kb on + strand, within Dshi_0833 at 842.390 kb on - strand, within Dshi_0833 at 842.390 kb on - strand, within Dshi_0833 at 842.390 kb on - strand, within Dshi_0833 at 842.409 kb on + strand, within Dshi_0833 at 842.883 kb on + strand at 842.888 kb on + strand at 842.888 kb on + strand at 842.992 kb on - strand at 843.051 kb on + strand at 843.121 kb on - strand at 843.191 kb on + strand, within Dshi_0834 at 843.240 kb on - strand, within Dshi_0834 at 843.591 kb on + strand, within Dshi_0834 at 843.668 kb on + strand, within Dshi_0834 at 843.687 kb on - strand, within Dshi_0834 at 843.827 kb on + strand, within Dshi_0834
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N) remove 840,434 + Dshi_0832 0.55 +0.4 840,594 - Dshi_0832 0.71 +0.6 840,688 - Dshi_0832 0.80 -0.7 840,854 - +1.4 840,878 - +0.5 840,893 + +0.3 840,895 + -0.0 841,015 + +0.6 841,043 - +0.1 841,043 - -0.3 841,153 + -0.2 841,161 - +0.2 841,319 + -0.4 841,342 + +2.1 841,413 + -0.2 841,498 + -1.0 841,578 + Dshi_0833 0.14 -0.7 841,583 + Dshi_0833 0.14 +0.9 841,591 - Dshi_0833 0.14 -1.1 841,609 - Dshi_0833 0.15 -1.1 841,757 + Dshi_0833 0.25 -0.9 841,934 - Dshi_0833 0.35 +2.1 841,934 - Dshi_0833 0.35 -0.9 841,983 + Dshi_0833 0.38 -0.4 842,041 + Dshi_0833 0.42 -1.0 842,170 - Dshi_0833 0.50 +0.2 842,187 + Dshi_0833 0.51 -0.4 842,382 + Dshi_0833 0.63 -0.9 842,390 - Dshi_0833 0.63 -0.0 842,390 - Dshi_0833 0.63 -3.2 842,390 - Dshi_0833 0.63 -0.5 842,409 + Dshi_0833 0.65 -0.2 842,883 + -0.5 842,888 + -0.6 842,888 + -0.4 842,992 - -1.2 843,051 + -0.6 843,121 - -0.1 843,191 + Dshi_0834 0.12 -0.6 843,240 - Dshi_0834 0.18 -0.7 843,591 + Dshi_0834 0.56 +0.3 843,668 + Dshi_0834 0.64 -0.1 843,687 - Dshi_0834 0.66 -2.4 843,827 + Dshi_0834 0.82 -0.8
Or see this region's nucleotide sequence