Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0828

Experiment: Varel_Bryant_medium_Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0827 and BT0828 are separated by 89 nucleotidesBT0828 and BT0829 are separated by 19 nucleotides BT0827: BT0827 - hypothetical protein (NCBI ptt file), at 1,021,802 to 1,022,899 BT0827 BT0828: BT0828 - dTDP-4-dehydrorhamnose 3,5-epimerase (NCBI ptt file), at 1,022,989 to 1,023,537 BT0828 BT0829: BT0829 - UDP-glucose 6-dehydrogenase (NCBI ptt file), at 1,023,557 to 1,024,870 BT0829 Position (kb) 1022 1023 1024Strain fitness (log2 ratio) -3 -2 -1 0 1at 1022.007 kb on - strand, within BT0827at 1022.320 kb on - strand, within BT0827at 1022.357 kb on - strand, within BT0827at 1022.517 kb on - strand, within BT0827at 1022.560 kb on - strand, within BT0827at 1022.900 kb on - strandat 1022.982 kb on - strandat 1022.982 kb on - strandat 1022.996 kb on - strandat 1022.997 kb on + strandat 1023.061 kb on + strand, within BT0828at 1023.187 kb on + strand, within BT0828at 1023.398 kb on - strand, within BT0828at 1023.642 kb on + strandat 1023.696 kb on - strand, within BT0829at 1023.880 kb on + strand, within BT0829at 1023.895 kb on + strand, within BT0829at 1023.957 kb on + strand, within BT0829at 1024.068 kb on + strand, within BT0829at 1024.118 kb on + strand, within BT0829at 1024.150 kb on + strand, within BT0829at 1024.188 kb on - strand, within BT0829at 1024.269 kb on + strand, within BT0829at 1024.273 kb on + strand, within BT0829at 1024.323 kb on + strand, within BT0829at 1024.409 kb on - strand, within BT0829at 1024.417 kb on - strand, within BT0829

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Per-strain Table

Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose
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1,022,007 - BT0827 0.19 -1.0
1,022,320 - BT0827 0.47 -0.4
1,022,357 - BT0827 0.51 -1.1
1,022,517 - BT0827 0.65 +0.1
1,022,560 - BT0827 0.69 -1.2
1,022,900 - +0.2
1,022,982 - -0.3
1,022,982 - +0.5
1,022,996 - -1.1
1,022,997 + -0.3
1,023,061 + BT0828 0.13 +0.1
1,023,187 + BT0828 0.36 -2.8
1,023,398 - BT0828 0.74 -2.4
1,023,642 + -0.5
1,023,696 - BT0829 0.11 -2.7
1,023,880 + BT0829 0.25 -1.5
1,023,895 + BT0829 0.26 +1.1
1,023,957 + BT0829 0.30 +0.8
1,024,068 + BT0829 0.39 -0.3
1,024,118 + BT0829 0.43 -0.3
1,024,150 + BT0829 0.45 -1.8
1,024,188 - BT0829 0.48 +1.1
1,024,269 + BT0829 0.54 -0.3
1,024,273 + BT0829 0.54 +0.4
1,024,323 + BT0829 0.58 +1.4
1,024,409 - BT0829 0.65 -0.1
1,024,417 - BT0829 0.65 +0.7

Or see this region's nucleotide sequence