Experiment: Varel_Bryant_medium_Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0666 and BT0667 are separated by 12 nucleotides BT0667 and BT0668 are separated by 1 nucleotides
BT0666: BT0666 - hypothetical protein (NCBI ptt file), at 820,535 to 821,680
BT0666
BT0667: BT0667 - signal peptidase I (SPase I) (NCBI ptt file), at 821,693 to 822,415
BT0667
BT0668: BT0668 - hypothetical protein (NCBI ptt file), at 822,417 to 824,366
BT0668
Position (kb) 821
822
823 Strain fitness (log2 ratio) -2
-1
0
1 at 820.758 kb on - strand, within BT0666 at 820.789 kb on - strand, within BT0666 at 820.790 kb on - strand, within BT0666 at 820.790 kb on - strand, within BT0666 at 820.794 kb on - strand, within BT0666 at 820.853 kb on + strand, within BT0666 at 820.854 kb on - strand, within BT0666 at 820.864 kb on - strand, within BT0666 at 820.964 kb on - strand, within BT0666 at 821.018 kb on - strand, within BT0666 at 821.023 kb on + strand, within BT0666 at 821.194 kb on + strand, within BT0666 at 821.203 kb on - strand, within BT0666 at 821.203 kb on - strand, within BT0666 at 821.227 kb on - strand, within BT0666 at 821.229 kb on - strand, within BT0666 at 821.235 kb on - strand, within BT0666 at 821.267 kb on + strand, within BT0666 at 821.332 kb on + strand, within BT0666 at 821.524 kb on + strand, within BT0666 at 821.525 kb on - strand, within BT0666 at 821.546 kb on - strand, within BT0666 at 821.602 kb on - strand at 821.645 kb on - strand at 821.685 kb on - strand at 821.792 kb on - strand, within BT0667 at 821.842 kb on - strand, within BT0667 at 822.055 kb on - strand, within BT0667 at 822.057 kb on - strand, within BT0667 at 822.057 kb on - strand, within BT0667 at 822.113 kb on - strand, within BT0667 at 822.131 kb on - strand, within BT0667 at 822.134 kb on - strand, within BT0667 at 822.138 kb on - strand, within BT0667 at 822.190 kb on - strand, within BT0667 at 822.507 kb on + strand at 822.633 kb on + strand, within BT0668 at 822.690 kb on - strand, within BT0668 at 822.758 kb on - strand, within BT0668 at 822.762 kb on - strand, within BT0668 at 822.970 kb on - strand, within BT0668 at 823.081 kb on - strand, within BT0668 at 823.110 kb on + strand, within BT0668 at 823.110 kb on + strand, within BT0668 at 823.116 kb on - strand, within BT0668 at 823.116 kb on - strand, within BT0668 at 823.184 kb on + strand, within BT0668 at 823.188 kb on - strand, within BT0668 at 823.298 kb on + strand, within BT0668 at 823.298 kb on + strand, within BT0668 at 823.340 kb on + strand, within BT0668 at 823.345 kb on + strand, within BT0668 at 823.354 kb on + strand, within BT0668 at 823.360 kb on + strand, within BT0668 at 823.388 kb on - strand, within BT0668 at 823.388 kb on - strand, within BT0668
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose remove 820,758 - BT0666 0.19 -0.3 820,789 - BT0666 0.22 -1.5 820,790 - BT0666 0.22 -0.9 820,790 - BT0666 0.22 +0.7 820,794 - BT0666 0.23 -0.6 820,853 + BT0666 0.28 -0.3 820,854 - BT0666 0.28 -1.8 820,864 - BT0666 0.29 +0.4 820,964 - BT0666 0.37 -2.1 821,018 - BT0666 0.42 -0.1 821,023 + BT0666 0.43 +0.1 821,194 + BT0666 0.58 -0.9 821,203 - BT0666 0.58 +0.7 821,203 - BT0666 0.58 -0.9 821,227 - BT0666 0.60 -1.4 821,229 - BT0666 0.61 -0.5 821,235 - BT0666 0.61 +0.4 821,267 + BT0666 0.64 -0.9 821,332 + BT0666 0.70 +0.1 821,524 + BT0666 0.86 +0.1 821,525 - BT0666 0.86 +1.1 821,546 - BT0666 0.88 -0.9 821,602 - -2.0 821,645 - -1.2 821,685 - -1.5 821,792 - BT0667 0.14 -1.2 821,842 - BT0667 0.21 -1.6 822,055 - BT0667 0.50 -1.1 822,057 - BT0667 0.50 -2.4 822,057 - BT0667 0.50 -0.9 822,113 - BT0667 0.58 -0.6 822,131 - BT0667 0.61 +0.1 822,134 - BT0667 0.61 -2.2 822,138 - BT0667 0.62 -2.0 822,190 - BT0667 0.69 -1.2 822,507 + +1.3 822,633 + BT0668 0.11 -0.6 822,690 - BT0668 0.14 +0.3 822,758 - BT0668 0.17 +0.5 822,762 - BT0668 0.18 -2.1 822,970 - BT0668 0.28 +1.7 823,081 - BT0668 0.34 -1.3 823,110 + BT0668 0.36 +0.1 823,110 + BT0668 0.36 -1.3 823,116 - BT0668 0.36 +0.1 823,116 - BT0668 0.36 -0.1 823,184 + BT0668 0.39 +0.1 823,188 - BT0668 0.40 +1.7 823,298 + BT0668 0.45 -1.3 823,298 + BT0668 0.45 -0.1 823,340 + BT0668 0.47 +0.1 823,345 + BT0668 0.48 -0.2 823,354 + BT0668 0.48 -0.2 823,360 + BT0668 0.48 +0.7 823,388 - BT0668 0.50 -1.1 823,388 - BT0668 0.50 +0.5
Or see this region's nucleotide sequence