Experiment: Varel_Bryant_medium_Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0014 and BT0015 overlap by 29 nucleotides BT0015 and BT0016 are separated by 187 nucleotides BT0016 and BT0017 are separated by 112 nucleotides
BT0014: BT0014 - rteA, two-component system histidine kinase, with response regulator receiver domain (NCBI ptt file), at 10,893 to 13,316
BT0014
BT0015: BT0015 - rteB, two-component system response regulator (NCBI ptt file), at 13,288 to 14,586
BT0015
BT0016: BT0016 - hypothetical protein (NCBI ptt file), at 14,774 to 15,412
BT0016
BT0017: BT0017 - hypothetical protein (NCBI ptt file), at 15,525 to 16,472
BT0017
Position (kb) 13
14
15 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 12.370 kb on + strand, within BT0014 at 12.597 kb on + strand, within BT0014 at 12.636 kb on - strand, within BT0014 at 12.726 kb on + strand, within BT0014 at 12.726 kb on + strand, within BT0014 at 12.748 kb on + strand, within BT0014 at 12.818 kb on + strand, within BT0014 at 13.055 kb on + strand, within BT0014 at 13.056 kb on - strand, within BT0014 at 13.056 kb on - strand, within BT0014 at 13.097 kb on - strand at 13.215 kb on - strand at 13.283 kb on + strand at 13.285 kb on + strand at 13.333 kb on - strand at 13.337 kb on + strand at 13.624 kb on - strand, within BT0015 at 13.666 kb on + strand, within BT0015 at 13.739 kb on + strand, within BT0015 at 13.970 kb on + strand, within BT0015 at 14.161 kb on - strand, within BT0015 at 14.638 kb on - strand at 14.638 kb on - strand at 14.696 kb on + strand at 14.723 kb on - strand at 14.740 kb on - strand at 14.791 kb on + strand at 15.109 kb on + strand, within BT0016 at 15.265 kb on - strand, within BT0016 at 15.306 kb on + strand, within BT0016 at 15.308 kb on + strand, within BT0016 at 15.309 kb on - strand, within BT0016 at 15.310 kb on + strand, within BT0016 at 15.340 kb on + strand, within BT0016 at 15.341 kb on - strand, within BT0016 at 15.381 kb on - strand at 15.448 kb on + strand at 15.449 kb on - strand at 15.449 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose remove 12,370 + BT0014 0.61 +1.0 12,597 + BT0014 0.70 -0.8 12,636 - BT0014 0.72 +0.2 12,726 + BT0014 0.76 -0.7 12,726 + BT0014 0.76 -0.4 12,748 + BT0014 0.77 +0.2 12,818 + BT0014 0.79 -0.4 13,055 + BT0014 0.89 -1.1 13,056 - BT0014 0.89 -1.3 13,056 - BT0014 0.89 -1.4 13,097 - -2.0 13,215 - -0.2 13,283 + -1.3 13,285 + -0.4 13,333 - -1.0 13,337 + +0.2 13,624 - BT0015 0.26 -1.9 13,666 + BT0015 0.29 -0.2 13,739 + BT0015 0.35 -1.4 13,970 + BT0015 0.53 -2.0 14,161 - BT0015 0.67 -2.5 14,638 - -0.4 14,638 - +1.0 14,696 + -0.4 14,723 - -1.0 14,740 - -0.8 14,791 + -0.4 15,109 + BT0016 0.52 -0.0 15,265 - BT0016 0.77 -0.4 15,306 + BT0016 0.83 +1.3 15,308 + BT0016 0.84 -1.3 15,309 - BT0016 0.84 -1.8 15,310 + BT0016 0.84 +1.6 15,340 + BT0016 0.89 -0.6 15,341 - BT0016 0.89 -0.0 15,381 - -3.0 15,448 + -0.3 15,449 - -0.5 15,449 - -0.2
Or see this region's nucleotide sequence