Experiment: antimonate 0.005 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_6053 and Pf6N2E2_6054 are separated by 450 nucleotides Pf6N2E2_6054 and Pf6N2E2_6055 are separated by 174 nucleotides Pf6N2E2_6055 and Pf6N2E2_6056 are separated by 142 nucleotides
Pf6N2E2_6053 - Hydantoin permease, at 6,871,523 to 6,873,052
_6053
Pf6N2E2_6054 - Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10), at 6,873,503 to 6,874,246
_6054
Pf6N2E2_6055 - Homoserine kinase (EC 2.7.1.39), at 6,874,421 to 6,875,038
_6055
Pf6N2E2_6056 - Para-aminobenzoate synthase, aminase component (EC 2.6.1.85), at 6,875,181 to 6,876,524
_6056
Position (kb)
6873
6874
6875 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 6872.616 kb on + strand, within Pf6N2E2_6053 at 6872.616 kb on + strand, within Pf6N2E2_6053 at 6872.617 kb on - strand, within Pf6N2E2_6053 at 6872.617 kb on - strand, within Pf6N2E2_6053 at 6872.743 kb on - strand, within Pf6N2E2_6053 at 6872.766 kb on + strand, within Pf6N2E2_6053 at 6872.767 kb on - strand, within Pf6N2E2_6053 at 6872.767 kb on - strand, within Pf6N2E2_6053 at 6872.829 kb on + strand, within Pf6N2E2_6053 at 6872.829 kb on + strand, within Pf6N2E2_6053 at 6872.830 kb on - strand, within Pf6N2E2_6053 at 6872.850 kb on + strand, within Pf6N2E2_6053 at 6872.850 kb on + strand, within Pf6N2E2_6053 at 6872.850 kb on + strand, within Pf6N2E2_6053 at 6872.850 kb on + strand, within Pf6N2E2_6053 at 6872.850 kb on + strand, within Pf6N2E2_6053 at 6872.850 kb on + strand, within Pf6N2E2_6053 at 6872.851 kb on - strand, within Pf6N2E2_6053 at 6872.851 kb on - strand, within Pf6N2E2_6053 at 6872.851 kb on - strand, within Pf6N2E2_6053 at 6872.863 kb on + strand, within Pf6N2E2_6053 at 6872.863 kb on + strand, within Pf6N2E2_6053 at 6872.863 kb on + strand, within Pf6N2E2_6053 at 6872.863 kb on + strand, within Pf6N2E2_6053 at 6872.863 kb on + strand, within Pf6N2E2_6053 at 6872.863 kb on + strand, within Pf6N2E2_6053 at 6872.864 kb on - strand, within Pf6N2E2_6053 at 6872.898 kb on + strand, within Pf6N2E2_6053 at 6873.032 kb on - strand at 6873.032 kb on - strand at 6873.046 kb on + strand at 6873.046 kb on + strand at 6873.047 kb on - strand at 6873.047 kb on - strand at 6873.266 kb on - strand at 6873.360 kb on + strand at 6873.744 kb on + strand, within Pf6N2E2_6054 at 6874.285 kb on + strand at 6874.286 kb on - strand at 6874.286 kb on - strand at 6874.286 kb on - strand at 6874.288 kb on - strand at 6874.301 kb on + strand at 6874.393 kb on + strand at 6874.394 kb on - strand at 6874.536 kb on - strand, within Pf6N2E2_6055 at 6874.701 kb on - strand, within Pf6N2E2_6055 at 6874.701 kb on - strand, within Pf6N2E2_6055 at 6874.850 kb on + strand, within Pf6N2E2_6055 at 6874.850 kb on + strand, within Pf6N2E2_6055 at 6874.851 kb on - strand, within Pf6N2E2_6055 at 6874.851 kb on - strand, within Pf6N2E2_6055 at 6874.853 kb on + strand, within Pf6N2E2_6055 at 6874.880 kb on + strand, within Pf6N2E2_6055 at 6874.880 kb on + strand, within Pf6N2E2_6055 at 6874.880 kb on + strand, within Pf6N2E2_6055 at 6874.880 kb on + strand, within Pf6N2E2_6055 at 6874.881 kb on - strand, within Pf6N2E2_6055 at 6874.978 kb on + strand at 6874.978 kb on + strand at 6874.979 kb on - strand at 6874.979 kb on - strand at 6875.006 kb on - strand at 6875.006 kb on - strand at 6875.036 kb on + strand at 6875.036 kb on + strand at 6875.037 kb on - strand at 6875.087 kb on + strand at 6875.087 kb on + strand at 6875.087 kb on + strand at 6875.087 kb on + strand at 6875.088 kb on - strand at 6875.088 kb on - strand at 6875.171 kb on + strand at 6875.172 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction antimonate 0.005 M remove 6,872,616 + Pf6N2E2_6053 0.71 -0.1 6,872,616 + Pf6N2E2_6053 0.71 -0.2 6,872,617 - Pf6N2E2_6053 0.72 -0.1 6,872,617 - Pf6N2E2_6053 0.72 -0.7 6,872,743 - Pf6N2E2_6053 0.80 +0.4 6,872,766 + Pf6N2E2_6053 0.81 -0.3 6,872,767 - Pf6N2E2_6053 0.81 -2.4 6,872,767 - Pf6N2E2_6053 0.81 +0.4 6,872,829 + Pf6N2E2_6053 0.85 -0.2 6,872,829 + Pf6N2E2_6053 0.85 -0.0 6,872,830 - Pf6N2E2_6053 0.85 +0.0 6,872,850 + Pf6N2E2_6053 0.87 +0.1 6,872,850 + Pf6N2E2_6053 0.87 -0.3 6,872,850 + Pf6N2E2_6053 0.87 -0.5 6,872,850 + Pf6N2E2_6053 0.87 +1.5 6,872,850 + Pf6N2E2_6053 0.87 +0.5 6,872,850 + Pf6N2E2_6053 0.87 -0.2 6,872,851 - Pf6N2E2_6053 0.87 -1.3 6,872,851 - Pf6N2E2_6053 0.87 +0.6 6,872,851 - Pf6N2E2_6053 0.87 -0.1 6,872,863 + Pf6N2E2_6053 0.88 +0.2 6,872,863 + Pf6N2E2_6053 0.88 +2.2 6,872,863 + Pf6N2E2_6053 0.88 +0.7 6,872,863 + Pf6N2E2_6053 0.88 -0.7 6,872,863 + Pf6N2E2_6053 0.88 -0.3 6,872,863 + Pf6N2E2_6053 0.88 +0.1 6,872,864 - Pf6N2E2_6053 0.88 -0.5 6,872,898 + Pf6N2E2_6053 0.90 +1.5 6,873,032 - -0.4 6,873,032 - +1.1 6,873,046 + +1.1 6,873,046 + -0.9 6,873,047 - +1.1 6,873,047 - -1.6 6,873,266 - -0.2 6,873,360 + +0.3 6,873,744 + Pf6N2E2_6054 0.32 +1.8 6,874,285 + +1.8 6,874,286 - +1.2 6,874,286 - +0.2 6,874,286 - -1.2 6,874,288 - -0.1 6,874,301 + -1.2 6,874,393 + +0.3 6,874,394 - +0.5 6,874,536 - Pf6N2E2_6055 0.19 +0.9 6,874,701 - Pf6N2E2_6055 0.45 -2.2 6,874,701 - Pf6N2E2_6055 0.45 +0.8 6,874,850 + Pf6N2E2_6055 0.69 -0.3 6,874,850 + Pf6N2E2_6055 0.69 -0.2 6,874,851 - Pf6N2E2_6055 0.70 -0.0 6,874,851 - Pf6N2E2_6055 0.70 +1.8 6,874,853 + Pf6N2E2_6055 0.70 -0.2 6,874,880 + Pf6N2E2_6055 0.74 +1.4 6,874,880 + Pf6N2E2_6055 0.74 +0.2 6,874,880 + Pf6N2E2_6055 0.74 -0.1 6,874,880 + Pf6N2E2_6055 0.74 +0.1 6,874,881 - Pf6N2E2_6055 0.74 +0.2 6,874,978 + -0.2 6,874,978 + +0.8 6,874,979 - +1.2 6,874,979 - +0.1 6,875,006 - -0.5 6,875,006 - +0.2 6,875,036 + +0.7 6,875,036 + +0.3 6,875,037 - -1.0 6,875,087 + +1.0 6,875,087 + -1.4 6,875,087 + -0.6 6,875,087 + -1.6 6,875,088 - +0.2 6,875,088 - -0.6 6,875,171 + +0.0 6,875,172 - +0.1
Or see this region's nucleotide sequence